mRNA_H-elongata_contig55724.13000.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55724.13000.1
Unique NamemRNA_H-elongata_contig55724.13000.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D8LNY1_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY1_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.640e-38
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
            LWQPYR  +Y+YE VEC RRV LSG+V+F+ PNTAGQ+ T FL ++ FF +  VL+PY+++RD WLARIGHAIVM+S+FVA+  KVD + DD  SQDVFAG LVAAN ++ L
Sbjct:  893 LWQPYRQSVYYYEVVECFRRVTLSGLVIFILPNTAGQVMTGFLLSVAFFALFTVLDPYAHRRDTWLARIGHAIVMMSLFVAMAVKVDVTADDGFSQDVFAGALVAANVVLAL 1004          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.190e-33
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
            LW+PYRPE ++YE +EC RRV L+G+VVF++PNTA Q+  T L A  F +V  +L PY +  D WL+R GH IV LSMF  L+ KVD SD+   SQ VFAGV+VA +C+M LA
Sbjct: 1011 LWEPYRPERFYYEVIECGRRVLLTGVVVFIYPNTAAQVAVTILIAFFFLMVYEMLAPYRSDSDMWLSRGGHVIVFLSMFDVLLLKVDVSDERTESQRVFAGVIVAGHCLMFLA 1123          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.410e-32
Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
            LW+PYRPE ++YE +EC RR+ L+G+V F+FPN A Q+  T L A  F +V  V++PY+++ D WL+R GH IV LSMF AL+ KVD S +   SQDVFAGV VA + ++ILA
Sbjct:  912 LWEPYRPERFYYEVIECGRRIMLTGVVAFIFPNDAAQIAITMLVAFFFSLVFEVMSPYTSESDTWLSRGGHVIVFLSMFDALLLKVDVSSESEQSQDVFAGVFVAGHVLLILA 1024          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 6.640e-32
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
            LW+PYRPE ++YE VEC RRV L+G+VVF+FPN A Q+  T L A  FF +  +++PY +  D WL+R GH IV  SMF  L+ KVD SD+   SQ VFAGVLVA + +M+LA
Sbjct:  899 LWEPYRPERFYYEVVECGRRVMLTGVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLA 1011          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.250e-31
Identity = 58/112 (51.79%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
            LW+PY+P +++YE +EC RRV L+G+VVF++PNTA Q+  T L A  F ++   L PY+++ D W++R+GH +V LSM+VAL+ KVD SD+  SSQ+VF  VLVA +  MIL
Sbjct: 1368 LWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMIL 1479          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.420e-31
Identity = 59/112 (52.68%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
            LW+PYRP +++YE  EC  RV L+G+VVF++P+TA Q+  T + A  F +V  VL+PYS++ D W+ R+GH +V +SMFVAL+ KVD +D+D SSQ VF  VLVAA+  M+L
Sbjct:  554 LWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVL 665          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.130e-31
Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMI 333
            LW+PYRP +++YE +EC RRV L+G+VVF++PNTA Q+    L A++F ++   L PY+++ D WL R+GHA+V +SM+VAL+ KVD SD+  SSQ VF  +LVAA+  M+
Sbjct:  833 LWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMV 943          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.270e-31
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
            LWQPYRP +Y+YE +EC RR+ L+G+VVF++PNTA Q+  T +  ++F V+   L PY+   D W++R+ HA+V +S++VAL+ KVD S++  SSQ VF  VLVAA+  MILA
Sbjct:  873 LWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILA 985          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.420e-31
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
            LWQPYRP +Y+YE +EC RR+ L+G+VVF++PNTA Q+  T +  ++F V+   L PY+   D W++R+ HA+V +S++VAL+ KVD S++  SSQ VF  VLVAA+  MILA
Sbjct: 2611 LWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILA 2723          
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.990e-31
Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
            LW+PY+P +++YE +EC RRV L+G+VVF++PNTA Q+  T L A  F VV   L PY+++ D WL+R+GHA+V +SM+VAL+ KVD S++ + SQ VF  VLVAA+  MIL
Sbjct: 1923 LWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMIL 2034          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY1_ECTSI1.640e-3862.50Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5JWT9_9PHAE2.190e-3355.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE1.410e-3253.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX12_9PHAE6.640e-3254.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E9_9PHAE1.250e-3151.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LH65_ECTSI1.420e-3152.68Polymorphic outer membrane protein G/I family prot... [more]
D7G2Z8_ECTSI3.130e-3151.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHH1_ECTSI4.270e-3151.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI4.420e-3151.33LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5Y7_ECTSI5.990e-3153.57Polymorphic Outer membrane protein G/I family n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55724contigH-elongata_contig55724:2901..3242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D8LNY1
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size342
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.3503036-CDS-H-elongata_contig55724:2900..32181622930908.3503036-CDS-H-elongata_contig55724:2900..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55724 2901..3218 -
1691679620.1989002-CDS-H-elongata_contig55724:2900..32181691679620.1989002-CDS-H-elongata_contig55724:2900..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55724 2901..3218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.369062-UTR-H-elongata_contig55724:3218..32421622930908.369062-UTR-H-elongata_contig55724:3218..3242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55724 3219..3242 -
1691679620.2126374-UTR-H-elongata_contig55724:3218..32421691679620.2126374-UTR-H-elongata_contig55724:3218..3242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55724 3219..3242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55724.13000.1prot_H-elongata_contig55724.13000.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55724 2901..3218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55724.13000.1

>prot_H-elongata_contig55724.13000.1 ID=prot_H-elongata_contig55724.13000.1|Name=mRNA_H-elongata_contig55724.13000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPY
SNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANC
IMILAT
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mRNA from alignment at H-elongata_contig55724:2901..3242-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55724.13000.1 ID=mRNA_H-elongata_contig55724.13000.1|Name=mRNA_H-elongata_contig55724.13000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig55724:2901..3242- (Himanthalia elongata Himel1 dioecious)
TTATGGCAGCCGTACCGGCCGGAGATGTATTTTTACGAGGCTGTAGAGTG CCTGCGTCGTGTATTCTTGTCCGGCATCGTTGTGTTTGTCTTCCCGAATA CGGCCGGGCAGCTGGGTACGACGTTTCTCTTTGCACTGCTCTTCTTCGTG GTCCTTATGGTCCTGAACCCATACAGTAACCAAAGGGACGGCTGGTTGGC CAGAATAGGGCATGCGATTGTGATGCTGAGTATGTTTGTAGCATTGATGG CCAAGGTGGACACGTCGGATGATGACATATCCAGTCAAGACGTATTCGCA GGCGTACTCGTCGCAGCAAATTGCATTATGATATTGGCCACG
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Coding sequence (CDS) from alignment at H-elongata_contig55724:2901..3242-

>mRNA_H-elongata_contig55724.13000.1 ID=mRNA_H-elongata_contig55724.13000.1|Name=mRNA_H-elongata_contig55724.13000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig55724:2901..3242- (Himanthalia elongata Himel1 dioecious)
ATGTATTTTTACGAGGCTGTAGAGTGCCTGCGTCGTGTATTCTTGTCCGG
CATCGTTGTGTTTGTCTTCCCGAATACGGCCGGGCAGCTGGGTACGACGT
TTCTCTTTGCACTGCTCTTCTTCGTGGTCCTTATGGTCCTGAACCCATAC
AGTAACCAAAGGGACGGCTGGTTGGCCAGAATAGGGCATGCGATTGTGAT
GCTGAGTATGTTTGTAGCATTGATGGCCAAGGTGGACACGTCGGATGATG
ACATATCCAGTCAAGACGTATTCGCAGGCGTACTCGTCGCAGCAAATTGC
ATTATGATATTGGCCACGATGTATTTTTACGAGGCTGTAGAGTGCCTGCG
TCGTGTATTCTTGTCCGGCATCGTTGTGTTTGTCTTCCCGAATACGGCCG
GGCAGCTGGGTACGACGTTTCTCTTTGCACTGCTCTTCTTCGTGGTCCTT
ATGGTCCTGAACCCATACAGTAACCAAAGGGACGGCTGGTTGGCCAGAAT
AGGGCATGCGATTGTGATGCTGAGTATGTTTGTAGCATTGATGGCCAAGG
TGGACACGTCGGATGATGACATATCCAGTCAAGACGTATTCGCAGGCGTA
CTCGTCGCAGCAAATTGCATTATGATATTGGCCACG
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