mRNA_H-elongata_contig55717.12999.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: D7FQA3_ECTSI (Cysteine proteinase Cathepsin F (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA3_ECTSI) HSP 1 Score: 302 bits (774), Expect = 1.580e-99 Identity = 158/219 (72.15%), Postives = 193/219 (88.13%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKAG-DAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGVGEEGLMTIPCIIGHLSQLFIDAYISTRWARE 675
SVF ++ T L + +L+ AGGNDALALLLTVTTNLLGV+TVPF+VK VV AG DA ID V LLVKLII+VLVPL++GK++REAVPG KA VKR+K+ LSLT++ M+IMVVWQTLSR QD++TSVAF QILSV+A+GI LH +YLSINY +C+++L+L+RREFKAVVLMSSQKTLPVSVTVI FLG VG+EGLMTIPCI+GH+SQLF+DAYI++RWA +
Sbjct: 119 SVFCVVPTTLSSGVTLVMNAGGNDALALLLTVTTNLLGVVTVPFYVKGVVNAGEDASIDPVGLLVKLIISVLVPLVVGKVIREAVPGAKARVKRFKVRLSLTSSAMLIMVVWQTLSRAQDNLTSVAFTQILSVIASGIGLHLVYLSINYPICKYILKLKRREFKAVVLMSSQKTLPVSVTVIGFLGNVGQEGLMTIPCIVGHMSQLFMDAYIASRWAND 337
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A836CLX8_9STRA (Cysteine proteinase cathepsin F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX8_9STRA) HSP 1 Score: 209 bits (532), Expect = 1.060e-62 Identity = 112/224 (50.00%), Postives = 156/224 (69.64%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKA-----GDAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGVGEEGLMTIPCIIGHLSQLFIDAYISTRWAREV 678
+VF + T L + S++ QAGGN ALALLLTV TNL V+T PF++ A+ K+ A ID V LL KLI+TVLVPL+ GK++R+ VPG K +V R K+ L + NN M+ ++VW T+S +D+ S F I V+A GIA+H IYLS+N+ + +F L+L EFKAV +M+SQKTLP+SVT+I++L +G G MT+PCI+GH+SQLFIDA + + W +
Sbjct: 98 TVFCAVPTTLASGVSMVTQAGGNGALALLLTVVTNLTAVVTTPFWLSAMFKSKSQGTNGATIDPVSLLQKLIVTVLVPLVFGKLLRDLVPGCKGFVTRQKVKLGVCNNIMLTLIVWLTISDAAEDLLSTPFADIAVVIACGIAVHVIYLSLNWPMGKFALKLPLPEFKAVTIMASQKTLPLSVTIISYLTALGSTGFMTLPCIVGHMSQLFIDAGLQSMWLAQA 321
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A836CJ89_9STRA (Cysteine proteinase cathepsin F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ89_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.070e-53 Identity = 98/225 (43.56%), Postives = 151/225 (67.11%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKAGDAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGVGEEGLMTIPCIIGHLSQLFIDAYISTRWAREVESGGEN 696
++F + T + ++ AGGN ALAL+LTV +NLLGVL PF+++A D IDA+DLLV L+ITVL PL++G+ +R VP + V R K L L ++ + ++VWQT+SR +DI +V+ I++++AA + +H YL +++ R++LRL E KAVV+MSS+KTLPV++ VIAFL VG EGL++IP I+ QLF+D++I+T+W + + +
Sbjct: 93 AIFCGVPTTIAVGVAMTTAAGGNAALALMLTVFSNLLGVLITPFWLQAFFSGQDVAIDALDLLVNLLITVLAPLLVGQAIRFLVPPVRTLVTRHKTALKLISSTSLALIVWQTVSRSAEDILAVSGGSIVAIIAASLIMHVAYLVVSFVTARYLLRLGDAELKAVVIMSSEKTLPVAIAVIAFLTNVGSEGLLSIPPIVSQQVQLFMDSFIATKWGEKTSAAARH 317
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A6H5KQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ7_9PHAE) HSP 1 Score: 178 bits (452), Expect = 9.950e-52 Identity = 95/125 (76.00%), Postives = 112/125 (89.60%), Query Frame = 1
Query: 76 QAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKAGD-AEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAI 447
QAGGNDALALLLTVTTNLLGV+TVPF+VK VV AGD A ID V LLVKLII+VLVPL++GK++REAVPG KAWVKR+K+ LSLT++ M+IMVVWQTLSR QD++TSVAF QILSV+A+GI LH +
Sbjct: 172 QAGGNDALALLLTVTTNLLGVVTVPFYVKGVVNAGDDASIDPVGLLVKLIISVLVPLVVGKVIREAVPGAKAWVKRFKVRLSLTSSAMLIMVVWQTLSRAQDNLTSVAFTQILSVIASGIGLHLV 296
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A7S3W5J0_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W5J0_9SPIT) HSP 1 Score: 180 bits (457), Expect = 3.820e-51 Identity = 99/222 (44.59%), Postives = 147/222 (66.22%), Query Frame = 1
Query: 28 FFLLC---TRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKAGDAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGG-VGEEGLMTIPCIIGHLSQLFIDAYISTRWAREVE 681
F L C T + + +L+ GN ALALLLTVT+NLLGV TVPFF+ ++ D +ID LLVKL++ +L+PLI+GK +R+ +AW+KR K +S T++F + ++ W LS + S+++E +L ++A G+ +H IYL NY+V +L E KAVV+M SQKTLP+++TV+AF +GE GL+ IPCI+ HL+Q+F+DA+I +WA E
Sbjct: 144 FILFCSMPTTINSGVALVTAGKGNVALALLLTVTSNLLGVFTVPFFLSLLLNVSDIKIDPGPLLVKLLLMILLPLIMGKAIRDMSKRVQAWLKRHKQLVSNTSSFFLCLIPWMKLSESNTALRSLSWEAVLGLIACGLVIHTIYLIFNYSVAHCILGTELSLKKAVVVMCSQKTLPMAMTVLAFFPTTLGEPGLIAIPCIVTHLTQIFMDAFIVAKWATAKE 365
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A5B8MCM7_9CHLO (Putative sodium/metabolite cotransporter n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCM7_9CHLO) HSP 1 Score: 175 bits (443), Expect = 7.240e-49 Identity = 101/225 (44.89%), Postives = 150/225 (66.67%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKAG-DAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGV--GEEGLMTIPCIIGHLSQLFIDAYISTRWAREVESG 687
SVF + T L + +L+ Q GGN ALALLLTV TNLLG+LTVPF VK V+ + D + DA+ LL+KL IT+L PLI+GK++R + + K K S+ N+ ++++VWQTLS+ Q ++ + +L +VA GI +H +L N+ + +LR+E+ E++A++L +SQKTLP++VTVI FL G GL+ +PC++ HL Q+ ID+ I +RW VESG
Sbjct: 114 SVFCAVPTTLSSGVALVTQGGGNAALALLLTVGTNLLGILTVPFAVKLVLDSEEDFDFDALSLLIKLAITILAPLILGKLLRHSHQALGKFAKEKKQKFSMANSLCLVLIVWQTLSKAQPEVIDQSAGDLLLLVAGGIGIHIAFLVFNF-ISVSLLRVEQPEYRALLLCTSQKTLPIAVTVINFLPEPYEGYHGLLVVPCVVSHLVQILIDSVIVSRWMGGVESG 337
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A061RZ11_9CHLO (Cysteine proteinase cathepsin f n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZ11_9CHLO) HSP 1 Score: 171 bits (432), Expect = 2.780e-47 Identity = 103/219 (47.03%), Postives = 140/219 (63.93%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKA-------GDAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGG-VGEEGLMTIPCIIGHLSQLFIDAYI 654
+VF + T L + +L+ QA GN ALAL+LTVTTN+LGV T P + ++ G D L+VKL+ T+L P + GK+VRE+ WV K LSLTNN ++I +VW T+S G+D I + E I +A GIALHA+ L++N C ++LRL E KA ++ SQKTLPVS+TV++FL +G GL+TIPCIIGHLSQLF DA++
Sbjct: 166 AVFCSVPTTLTSGVTLVNQAAGNGALALMLTVTTNVLGVFTTPLMLALNLRVSGMSAETGTITFDTGALIVKLVATILAPTVFGKLVRESHHSVSDWVAGHKTLLSLTNNSLLICIVWMTISSGRDVIVAQPAEMIFLAIAVGIALHAVLLALNGAAC-WLLRLAPPERKAAHILGSQKTLPVSITVLSFLPPRLGNIGLLTIPCIIGHLSQLFTDAFL 383
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A7S0SJ85_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ85_9CHLO) HSP 1 Score: 167 bits (422), Expect = 3.630e-46 Identity = 99/229 (43.23%), Postives = 146/229 (63.76%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVVKAGDAE-----------IDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGV--GEEGLMTIPCIIGHLSQLFIDAYISTRWA 669
++F + T L + +L+ A GN ALAL+LTVTTN+LGV TVPF + AV+ + A+ LL+KL+I++++P+ IGK VRE + +K+ L L NN +I +VW ++S+ ++ + I +V AGI LH I+L++N+T+ VLRL +E +AV+LM+S KTLPV+VTVI++L G GL+ IPCI+GH+SQLFIDA I+ RWA
Sbjct: 110 ALFCCVPTTLTSGVTLVTSALGNSALALMLTVTTNVLGVFTVPFILNAVLDSAPGNGXXXXXXXSVAKTAMQLLIKLVISIIIPMSIGKSVREFFAVAQKATATYKVELGLVNNSCLIAIVWMSVSKSREKLVGQTPLNIFIIVVAGITLHIIFLAVNWTMTTPVLRLREKERRAVLLMTSAKTLPVAVTVISYLDEAVWGGHGLIAIPCIVGHVSQLFIDAAIAARWA 338
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: A0A7S2T7R9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T7R9_9CHLO) HSP 1 Score: 163 bits (413), Expect = 8.300e-46 Identity = 89/198 (44.95%), Postives = 132/198 (66.67%), Query Frame = 1
Query: 82 GGNDALALLLTVTTNLLGVLTVPFFVKAVVKAGDAEIDAVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGV--GEEGLMTIPCIIGHLSQLFIDAYISTRWA 669
GGN ALALLLTV +NLLG+LTVPF VK ++ + D +DA+ LL+KL+IT+L PL GK +R + + K K S+ N+ +I++VWQTLS+ Q + ++L ++A GI +H ++L +N+ +LR+E E++AV+L SSQKTLP++VTVI FL G GL+ +PC++ HL Q+ ID+ I + WA
Sbjct: 1 GGNAALALLLTVGSNLLGILTVPFAVKLILDSEDFNLDALSLLLKLLITILTPLCFGKALRHSNKKLAQFAKEQKQKFSMANSLCLILIVWQTLSKAQPQVIDQKAGELLLLIAGGIGIHLVFLMVNFFFIS-LLRMETEEYRAVLLCSSQKTLPIAVTVINFLPEPYEGYHGLLVVPCVVSHLVQILIDSVIVSHWA 197
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Match: C1E9H5_MICCC (Bile Acid:Na+ symporter family n=2 Tax=Micromonas TaxID=38832 RepID=C1E9H5_MICCC) HSP 1 Score: 165 bits (418), Expect = 1.480e-45 Identity = 95/228 (41.67%), Postives = 148/228 (64.91%), Query Frame = 1
Query: 22 SVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPFFVKAVV------KAGDAEID----AVDLLVKLIITVLVPLIIGKIVREAVPGTKAWVKRWKLYLSLTNNFMIIMVVWQTLSRGQDDITSVAFEQILSVVAAGIALHAIYLSINYTVCRFVLRLERREFKAVVLMSSQKTLPVSVTVIAFLGGV--GEEGLMTIPCIIGHLSQLFIDAYISTRWA 669
++F + T L + +L+ A GN +AL+LTVTTN+LGV TVPF + AV+ +G + D A LL+KLII++++P+ +GK RE V ++ ++K L LTNN +I +VW ++S + + + I +V AG+ LH +L++N+ + V+++ E +AV+LM+SQKTLPV+VT+IA+L G +GL+ IPCI+GH+SQLFIDAYI++ WA
Sbjct: 124 ALFACVPTTLTSGVTLVTSALGNGVMALMLTVTTNVLGVFTVPFILNAVLLSAPGGDSGGTDTDMAETAAKLLLKLIISIIIPMGVGKATREFVEQAPSFTTKYKTELGLTNNSCLIAIVWMSISNSRGKLVRESALNIFVIVVAGVLLHLFFLTMNWVMTTAVMKIPEAERRAVLLMTSQKTLPVAVTIIAYLDEARWGAQGLIAIPCIVGHVSQLFIDAYIASIWA 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55717.12999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55717.12999.1 >prot_H-elongata_contig55717.12999.1 ID=prot_H-elongata_contig55717.12999.1|Name=mRNA_H-elongata_contig55717.12999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp PRRYLFTSVFFLLCTRLKTSPSLLYQAGGNDALALLLTVTTNLLGVLTVPback to top mRNA from alignment at H-elongata_contig55717:1276..2467+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55717.12999.1 ID=mRNA_H-elongata_contig55717.12999.1|Name=mRNA_H-elongata_contig55717.12999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig55717:1276..2467+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55717:1276..2467+ >mRNA_H-elongata_contig55717.12999.1 ID=mRNA_H-elongata_contig55717.12999.1|Name=mRNA_H-elongata_contig55717.12999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig55717:1276..2467+ (Himanthalia elongata Himel1 dioecious)back to top |