prot_H-elongata_contig55697.12997.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55697.12997.1
Unique Nameprot_H-elongata_contig55697.12997.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
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BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Match: D7FX28_ECTSI (Foie-gras_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.110e-23
Identity = 55/91 (60.44%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:   12 QIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFGRPALSLLVI------------------GEGLVPYRHHAWLSRQYLSFGEVIS 84
            QIRGVAEVVHLRLVRNHL RN+SVEGAIRQLR HV+AFGRP  +                      G  +VPYRHHAWLSRQYL FGE++ 
Sbjct:  352 QIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAAXXXXXXXXXXXXXXXXXXXSGWRVVPYRHHAWLSRQYLVFGEMLG 442
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BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Match: A0A6H5JA98_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA98_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.420e-13
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 0 
Query:   12 QIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFGRP 52
            QIRGVAEVVHLRLVRNHL R++SVEGAIRQLR HV+AFGRP
Sbjct:  352 QIRGVAEVVHLRLVRNHLHRSMSVEGAIRQLRRHVSAFGRP 392
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BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Match: A0A2P6MV90_9EUKA (Foie-gras_1 domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV90_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 3.850e-5
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 0 
Query:   12 QIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFGRPALSLLVIGEGLVPYRHHAWLSRQYLSFGEVIS 84
            +I+ VA+++H  + R HL  N ++  A+ Q + H   + +P     V G   + Y+H AWLSRQYL FG+++ 
Sbjct:  343 EIKAVADLIHFMISRFHLNTN-NINEALNQFQRHARVY-KP-----VTGLPQIEYQHWAWLSRQYLVFGQMLE 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FX28_ECTSI1.110e-2360.44Foie-gras_1 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JA98_9PHAE2.420e-1387.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A2P6MV90_9EUKA3.850e-535.62Foie-gras_1 domain-containing protein n=1 Tax=Plan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021773Trafficking protein particle complex subunit 11PFAMPF11817Foie-gras_1coord: 12..84
e-value: 1.9E-6
score: 27.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55697contigH-elongata_contig55697:2595..2864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55697.12997.1mRNA_H-elongata_contig55697.12997.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55697 2595..2864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55697.12997.1 ID=prot_H-elongata_contig55697.12997.1|Name=mRNA_H-elongata_contig55697.12997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
NANVPPTPVTRQIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFG
RPALSLLVIGEGLVPYRHHAWLSRQYLSFGEVISLIFHC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021773TPC11