mRNA_H-elongata_contig55697.12997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55697.12997.1
Unique NamemRNA_H-elongata_contig55697.12997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Match: D7FX28_ECTSI (Foie-gras_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.110e-23
Identity = 55/91 (60.44%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   34 QIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFGRPALSLLVI------------------GEGLVPYRHHAWLSRQYLSFGEVIS 252
            QIRGVAEVVHLRLVRNHL RN+SVEGAIRQLR HV+AFGRP  +                      G  +VPYRHHAWLSRQYL FGE++ 
Sbjct:  352 QIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAAXXXXXXXXXXXXXXXXXXXSGWRVVPYRHHAWLSRQYLVFGEMLG 442
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BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Match: A0A6H5JA98_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA98_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.420e-13
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   34 QIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFGRP 156
            QIRGVAEVVHLRLVRNHL R++SVEGAIRQLR HV+AFGRP
Sbjct:  352 QIRGVAEVVHLRLVRNHLHRSMSVEGAIRQLRRHVSAFGRP 392
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BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Match: A0A2P6MV90_9EUKA (Foie-gras_1 domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV90_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 3.850e-5
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   34 QIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFGRPALSLLVIGEGLVPYRHHAWLSRQYLSFGEVIS 252
            +I+ VA+++H  + R HL  N ++  A+ Q + H   + +P     V G   + Y+H AWLSRQYL FG+++ 
Sbjct:  343 EIKAVADLIHFMISRFHLNTN-NINEALNQFQRHARVY-KP-----VTGLPQIEYQHWAWLSRQYLVFGQMLE 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55697.12997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FX28_ECTSI1.110e-2360.44Foie-gras_1 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JA98_9PHAE2.420e-1387.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A2P6MV90_9EUKA3.850e-535.62Foie-gras_1 domain-containing protein n=1 Tax=Plan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55697contigH-elongata_contig55697:2595..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue9.9e-21
Seed eggNOG ortholog2880.D7FX28
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
EggNOG free text desc.regulation of protein complex stability
EggNOG OGsKOG4386@1,KOG4386@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.0235646-CDS-H-elongata_contig55697:2594..28641622930908.0235646-CDS-H-elongata_contig55697:2594..2864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55697 2595..2864 +
1691679620.061808-CDS-H-elongata_contig55697:2594..28641691679620.061808-CDS-H-elongata_contig55697:2594..2864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55697 2595..2864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55697.12997.1prot_H-elongata_contig55697.12997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55697 2595..2864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55697.12997.1

>prot_H-elongata_contig55697.12997.1 ID=prot_H-elongata_contig55697.12997.1|Name=mRNA_H-elongata_contig55697.12997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
NANVPPTPVTRQIRGVAEVVHLRLVRNHLQRNISVEGAIRQLRMHVAAFG
RPALSLLVIGEGLVPYRHHAWLSRQYLSFGEVISLIFHC*
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mRNA from alignment at H-elongata_contig55697:2595..2864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55697.12997.1 ID=mRNA_H-elongata_contig55697.12997.1|Name=mRNA_H-elongata_contig55697.12997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig55697:2595..2864+ (Himanthalia elongata Himel1 dioecious)
AACGCGAACGTTCCTCCGACCCCCGTCACCCGTCAGATCCGGGGTGTGGC
AGAAGTGGTGCACCTTCGCCTCGTCCGCAACCACCTTCAGCGGAACATCA
GCGTCGAGGGGGCCATCCGGCAGCTCAGGATGCACGTCGCGGCCTTCGGC
AGGCCAGCCTTGAGTCTTCTCGTGATAGGAGAAGGGCTGGTACCCTACCG
CCATCACGCATGGCTTTCCCGGCAATACTTATCTTTCGGCGAGGTGATTT
CTTTGATTTTTCACTGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig55697:2595..2864+

>mRNA_H-elongata_contig55697.12997.1 ID=mRNA_H-elongata_contig55697.12997.1|Name=mRNA_H-elongata_contig55697.12997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig55697:2595..2864+ (Himanthalia elongata Himel1 dioecious)
AACGCGAACGTTCCTCCGACCCCCGTCACCCGTCAGATCCGGGGTGTGGC
AGAAGTGGTGCACCTTCGCCTCGTCCGCAACCACCTTCAGCGGAACATCA
GCGTCGAGGGGGCCATCCGGCAGCTCAGGATGCACGTCGCGGCCTTCGGC
AGGCCAGCCTTGAGTCTTCTCGTGATAGGAGAAGGGCTGGTACCCTACCG
CCATCACGCATGGCTTTCCCGGCAATACTTATCTTTCGGCGAGGTGATTT
CTTTGATTTTTCACTGCTAAAACGCGAACGTTCCTCCGACCCCCGTCACC
CGTCAGATCCGGGGTGTGGCAGAAGTGGTGCACCTTCGCCTCGTCCGCAA
CCACCTTCAGCGGAACATCAGCGTCGAGGGGGCCATCCGGCAGCTCAGGA
TGCACGTCGCGGCCTTCGGCAGGCCAGCCTTGAGTCTTCTCGTGATAGGA
GAAGGGCTGGTACCCTACCGCCATCACGCATGGCTTTCCCGGCAATACTT
ATCTTTCGGCGAGGTGATTTCTTTGATTTTTCACTGCTAA
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