prot_H-elongata_contig55675.12993.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig55675.12993.1
Unique Name	prot_H-elongata_contig55675.12993.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	111

Homology

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: D8LTW6_ECTSI (40S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTW6_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.070e-66
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNVEE 110
            PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTY+RCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRK+DAHHAQVIYTRATNVEE
Sbjct:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYTRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: A0A835ZCY0_9STRA (40S ribosomal protein S25 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY0_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.070e-48
Identity = 80/108 (74.07%), Postives = 91/108 (84.26%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNVE 109
            PPK QQKSKEQK AAAMAGGK RKKKWSK K R+K+ N+VLF E TY R + EVPKMKL+T S LVERLK+NGSLARAAIRELEEKG+IR++  H AQ++YTRATN E
Sbjct:    2 PPKVQQKSKEQKAAAAMAGGKSRKKKWSKNKARDKILNEVLFKEPTYERMMNEVPKMKLVTTSALVERLKINGSLARAAIRELEEKGVIRRVSHHSAQLVYTRATNTE 109

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: F0YAB4_AURAN (40S ribosomal protein S25 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YAB4_AURAN)

HSP 1 Score: 156 bits (395), Expect = 1.690e-47
Identity = 80/103 (77.67%), Postives = 93/103 (90.29%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTR 104
            PPK QQKSKE KMAAAMAGGK +KKKWSKGKVREK+AN+VLF+EDTY+R LAE+PKMKLIT S LVERLKVNG+LARAAI+EL+EKGLI+++  HH Q I+TR
Sbjct:    2 PPKVQQKSKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTYARLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYHHTQWIFTR 104

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: W7TVF9_9STRA (40S ribosomal protein S25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVF9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.970e-46
Identity = 79/110 (71.82%), Postives = 95/110 (86.36%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYS-RCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNVEE 110
            PPK QQK+KEQK+AAAMAGGK +KKKWSKGK+REKVAN+VLF+E+ Y+ R L E+PK KLIT S LVERLK+NGSLARAA+REL+EKGLI+ +  HH+Q+IYTRAT   E
Sbjct:    2 PPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: A0A7S3Y488_HETAK (40S ribosomal protein S25 n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y488_HETAK)

HSP 1 Score: 154 bits (388), Expect = 3.030e-46
Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNVEE 110
            PPKTQQKSKEQKMAAA+AGGK RKKKWSKGKVREK+AN+VL++EDTY R L E+PKMKLIT S LVERLKVNG+LARA++ EL EKGLI+++  H +Q IYTR T   E
Sbjct:   14 PPKTQQKSKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGSQQIYTRTTGDAE 122

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: A0A7S2G994_9STRA (40S ribosomal protein S25 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G994_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.760e-45
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNVE 109
            PPKTQQKSKE KMAAAMAGGKG+KKKWSKGKVREKVAN+VLF E+ Y R   EVPKMKLIT S LVERLK+ GSLARAAI+ELE + +I+++  H +Q +YTRAT VE
Sbjct:    2 PPKTQQKSKEAKMAAAMAGGKGKKKKWSKGKVREKVANKVLFEEELYERLKTEVPKMKLITPSALVERLKIGGSLARAAIKELESEEMIKRLSYHSSQWVYTRATAVE 109

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: F0WED2_9STRA (40S ribosomal protein S25 n=2 Tax=Albugo TaxID=65356 RepID=F0WED2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.930e-44
Identity = 80/111 (72.07%), Postives = 97/111 (87.39%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGR-KKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRA-TNVEE 110
            PPKTQQK+KEQKMAAAMAGG+G+ KKKWSK KVREKVAN+VL++++TY R L+EVPKMKLITAS +VERLKVN +LAR++IR+LE  G I ++ AHH Q+IYTRA TN EE
Sbjct:    2 PPKTQQKTKEQKMAAAMAGGRGKGKKKWSKCKVREKVANKVLYDQETYDRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAEE 112

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: A0A485LJ93_9STRA (40S ribosomal protein S25 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LJ93_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.160e-41
Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGR-KKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRA 105
            PPKTQQK+KEQKMAAA+AGG+G+ KKKWSKGKVREK AN+VLF+++TY R   EVPKMKLITAS +VERLKVN +LARAAI ELE+KG I+ +  H  Q+IYTR+
Sbjct:    2 PPKTQQKTKEQKMAAALAGGRGKGKKKWSKGKVREKTANKVLFDQETYERMCKEVPKMKLITASAVVERLKVNATLARAAILELEQKGEIKCVTKHRCQMIYTRS 106

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: A0A067CYE5_SAPPC (40S ribosomal protein S25 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYE5_SAPPC)

HSP 1 Score: 136 bits (343), Expect = 1.450e-39
Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = 0

Query:    2 PPKTQQKSKEQKMAAAMAGGKGR-KKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNVE 109
            PPKTQQK+KEQKMAAA+AG +G+ KKKWSKGK REK  N+VL++++ Y R   EVPKMKLITAS +VERLKVN +LARA IRELE KG I+ +  H AQ+IYTRA + E
Sbjct:    2 PPKTQQKTKEQKMAAALAGSRGKGKKKWSKGKAREKTQNKVLYDQEAYERMCKEVPKMKLITASAIVERLKVNAALARATIRELELKGDIKVVSKHSAQLIYTRAISAE 110

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BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Match: A0A7S3HEM3_9STRA (40S ribosomal protein S25 n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S3HEM3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.850e-39
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 0

Query:    3 PKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQVIYTRATNV 108
            PK QQK+KEQK+AAA+AGGK +KKKWSKGK+REK+  +VLF+ED + R   EVPKMKLIT S LVERLK+NGSLARAA + L E+G I KI+ HHAQ IYTR T V
Sbjct:   13 PKVQQKTKEQKLAAALAGGKSKKKKWSKGKLREKMNAKVLFDEDGWKRLQEEVPKMKLITPSALVERLKINGSLARAACKYLLEEGKISKIETHHAQSIYTRVTAV 118

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot

BLAST of mRNA_H-elongata_contig55675.12993.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTW6_ECTSI	1.070e-66	98.17	40S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID...	[more]
A0A835ZCY0_9STRA	6.070e-48	74.07	40S ribosomal protein S25 n=2 Tax=Tribonema minus ...	[more]
F0YAB4_AURAN	1.690e-47	77.67	40S ribosomal protein S25 n=2 Tax=Pelagomonadales ...	[more]
W7TVF9_9STRA	2.970e-46	71.82	40S ribosomal protein S25 n=2 Tax=Monodopsidaceae ...	[more]
A0A7S3Y488_HETAK	3.030e-46	73.39	40S ribosomal protein S25 n=2 Tax=Sar TaxID=269873...	[more]
A0A7S2G994_9STRA	4.760e-45	73.15	40S ribosomal protein S25 n=1 Tax=Florenciella par...	[more]
F0WED2_9STRA	2.930e-44	72.07	40S ribosomal protein S25 n=2 Tax=Albugo TaxID=653...	[more]
A0A485LJ93_9STRA	2.160e-41	71.43	40S ribosomal protein S25 n=7 Tax=Aphanomyces TaxI...	[more]
A0A067CYE5_SAPPC	1.450e-39	66.97	40S ribosomal protein S25 n=4 Tax=Saprolegniaceae ...	[more]
A0A7S3HEM3_9STRA	1.850e-39	68.87	40S ribosomal protein S25 n=2 Tax=Eukaryota TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	GENE3D	1.10.10.2780		coord: 21..110 e-value: 1.8E-36 score: 126.0
None	No IPR available	PANTHER	PTHR12850:SF5	RIBOSOMAL PROTEIN S25	coord: 3..107
None	No IPR available	PRODOM	PD012268		coord: 41..107 e-value: 3.0E-18 score: 220.0
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 6..105 e-value: 6.1E-43 score: 145.1
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 3..107
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 47..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig55675	contig	H-elongata_contig55675:1616..3325 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig55675.12993.1	mRNA_H-elongata_contig55675.12993.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig55675 1616..3325 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig55675.12993.1 ID=prot_H-elongata_contig55675.12993.1|Name=mRNA_H-elongata_contig55675.12993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
QPPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYSR
CLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKIDAHHAQV
IYTRATNVEE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25
IPR036390	WH_DNA-bd_sf