mRNA_H-elongata_contig5564.12989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5564.12989.1
Unique NamemRNA_H-elongata_contig5564.12989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5564.12989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5564contigH-elongata_contig5564:4643..5463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D8LDL9
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-15_000090.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5564.12989.1prot_H-elongata_contig5564.12989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5564 4698..5433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.2039967-UTR-H-elongata_contig5564:4642..46971622930907.2039967-UTR-H-elongata_contig5564:4642..4697Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5564 4643..4697 +
1691679619.7467842-UTR-H-elongata_contig5564:4642..46971691679619.7467842-UTR-H-elongata_contig5564:4642..4697Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5564 4643..4697 +
1622930907.262922-UTR-H-elongata_contig5564:5433..54631622930907.262922-UTR-H-elongata_contig5564:5433..5463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5564 5434..5463 +
1691679619.783056-UTR-H-elongata_contig5564:5433..54631691679619.783056-UTR-H-elongata_contig5564:5433..5463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5564 5434..5463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.2200563-CDS-H-elongata_contig5564:4697..48621622930907.2200563-CDS-H-elongata_contig5564:4697..4862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5564 4698..4862 +
1691679619.7608855-CDS-H-elongata_contig5564:4697..48621691679619.7608855-CDS-H-elongata_contig5564:4697..4862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5564 4698..4862 +
1622930907.241565-CDS-H-elongata_contig5564:5175..54331622930907.241565-CDS-H-elongata_contig5564:5175..5433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5564 5176..5433 +
1691679619.770796-CDS-H-elongata_contig5564:5175..54331691679619.770796-CDS-H-elongata_contig5564:5175..5433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5564 5176..5433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5564.12989.1

>prot_H-elongata_contig5564.12989.1 ID=prot_H-elongata_contig5564.12989.1|Name=mRNA_H-elongata_contig5564.12989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MTSEPNGDIVFSNVNHDRVVCAAAWIGNSPKYSSGLMISDGGEALTTWGN
GRNGQLGMGLETISLPRRVTSAFIHNMIIPGREARSESMLRVSENKKMSH
ASGVDGTIEGVSGAGIEVGLLALVDAAADERDVQDGLLLV*
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mRNA from alignment at H-elongata_contig5564:4643..5463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5564.12989.1 ID=mRNA_H-elongata_contig5564.12989.1|Name=mRNA_H-elongata_contig5564.12989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig5564:4643..5463+ (Himanthalia elongata Himel1 dioecious)
CCCACAGGGGTGGGGAGACTCGGACTCGTACGTGGCTCTCGCGGATGGGC
ACTTGATGACATCAGAACCAAATGGAGATATAGTCTTCAGCAACGTGAAT
CACGACAGAGTGGTCTGTGCCGCGGCGTGGATCGGCAACAGTCCCAAGTA
CAGCAGTGGGCTCATGATTTCCGACGGCGGTGAAGCACTGACAACTTGGG
GCAATGGACGAAATGGACAGGCGAGATGACGCTGGAGGAAAAATTGTCAA
TAAAAATACAGCAGACCTCGTCATCAGATACTTTTTTTGAATAGGGCACT
TCCTCGTGAACGGAGAAGCGATCTACTCAGTTATCAATATACCCCCCCCC
GCTTTCCTCCGCACTCCCGAGAACGCGTGGTAGAACGCGTGGTCAATGGC
CTACAGCTAAAACTTGCAAAGTACCCCCGCCCCGACTCCGATGCATTTGA
ACAAGAAAAATGAAAGCTACAATGTCAATGTCCTCACGATCTCCGCCTCG
TACGCACGCCTCGAACCATTTACTTTCGGACAGCTCGGTATGGGTTTGGA
GACAATATCTCTTCCAAGGAGGGTCACAAGTGCATTTATACATAATATGA
TTATTCCGGGACGGGAAGCTCGATCGGAGAGCATGCTGCGGGTTTCGGAA
AACAAGAAAATGTCACACGCGAGCGGCGTTGACGGAACAATCGAGGGTGT
GTCCGGCGCAGGAATTGAAGTAGGCCTGCTTGCGCTAGTTGATGCCGCTG
CTGATGAAAGAGATGTACAAGACGGTCTATTATTAGTATAAGCTTAAGGG
GGTAGTGAGAAATGGTAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig5564:4643..5463+

>mRNA_H-elongata_contig5564.12989.1 ID=mRNA_H-elongata_contig5564.12989.1|Name=mRNA_H-elongata_contig5564.12989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig5564:4643..5463+ (Himanthalia elongata Himel1 dioecious)
ATGACATCAGAACCAAATGGAGATATAGTCTTCAGCAACGTGAATCACGA
CAGAGTGGTCTGTGCCGCGGCGTGGATCGGCAACAGTCCCAAGTACAGCA
GTGGGCTCATGATTTCCGACGGCGGTGAAGCACTGACAACTTGGGGCAAT
GGACGAAATGGACAGATGACATCAGAACCAAATGGAGATATAGTCTTCAG
CAACGTGAATCACGACAGAGTGGTCTGTGCCGCGGCGTGGATCGGCAACA
GTCCCAAGTACAGCAGTGGGCTCATGATTTCCGACGGCGGTGAAGCACTG
ACAACTTGGGGCAATGGACGAAATGGACAGCTCGGTATGGGTTTGGAGAC
AATATCTCTTCCAAGGAGGGTCACAAGTGCATTTATACATAATATGATTA
TTCCGGGACGGGAAGCTCGATCGGAGAGCATGCTGCGGGTTTCGGAAAAC
AAGAAAATGTCACACGCGAGCGGCGTTGACGGAACAATCGAGGGTGTGTC
CGGCGCAGGAATTGAAGTAGGCCTGCTTGCGCTAGTTGATGCCGCTGCTG
ATGAAAGAGATGTACAAGACGGTCTATTATTAGTATAACTCGGTATGGGT
TTGGAGACAATATCTCTTCCAAGGAGGGTCACAAGTGCATTTATACATAA
TATGATTATTCCGGGACGGGAAGCTCGATCGGAGAGCATGCTGCGGGTTT
CGGAAAACAAGAAAATGTCACACGCGAGCGGCGTTGACGGAACAATCGAG
GGTGTGTCCGGCGCAGGAATTGAAGTAGGCCTGCTTGCGCTAGTTGATGC
CGCTGCTGATGAAAGAGATGTACAAGACGGTCTATTATTAGTATAA
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