mRNA_H-elongata_contig55545.12973.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55545.12973.1
Unique NamemRNA_H-elongata_contig55545.12973.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: D8LLP9_ECTSI (Zinc binding dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP9_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 8.100e-89
Identity = 163/256 (63.67%), Postives = 183/256 (71.48%), Query Frame = 3
Query:   93 DP-SGTVPEAGTWRTSAILDEAFLVGVP--------------RDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTG--QILLQLAAARGLESVCLVSNEEEVERATKLGASKAILLKEFKAMRMDDACLVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVETRALAERSLEAAAAGALTLEGTREFELEEVTSAIDAARAPGGGPILLR 809
            DP +G    AGTWRT A L EA LV VP              + G GG V   +AAH S S+ATA+R+LEDF  K L AGDRVV TGAS+   QILLQLAA+RGLESVCLV++EEE   A KLGA KA LLKEFKAMRMD+AC+VADGEGGVLGFTA RALRFRG +VSYAD+SGGGVS+PVAGQIF DT+CRGFSL+RWAS R   E R L ERSL  AA+  L LEG R+F L E   AID  R  G  P+LLR
Sbjct:  130 DPGNGARQAAGTWRTRATLTEASLVKVPIGGSGAAAAGVLEEKGGDGGGVGFEVAAHCSVSVATAIRILEDFVEKELGAGDRVVFTGASSAVAQILLQLAASRGLESVCLVNSEEEAALALKLGAWKATLLKEFKAMRMDNACIVADGEGGVLGFTAARALRFRGCFVSYADLSGGGVSLPVAGQIFSDTKCRGFSLRRWASSRPPSEKRELVERSLGVAASAGLRLEGARDFPLREAALAIDTLRQTGC-PVLLR 384          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A6H5JRW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW4_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.280e-74
Identity = 148/252 (58.73%), Postives = 167/252 (66.27%), Query Frame = 3
Query:   99 SGTVPEAGTWRTSAILDEAFLVGVPRDGA---------------GGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTGQILLQLAAARGLESVCLVSNEEEVERATKLGASKAILLKEFKAMRMDDACLVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVETRALAERSLEAAAAGALTLEGTREFELEEVTSAIDAARAPGGGPILLR 809
            +G    AGTWR+ AIL EA LV VP  G                GG V   +AAH S S+ATA+R+L+DF  K L AGDRVV TGAS+      +A AR     C    EEE   A KLGA KA LLKEFKAMRMD+AC+VADGEGGVLGFTA RALRFRG +VSYAD+SGGGVS+PVAGQIF DT+CRGFSL+RWAS R   E R L ERSL  AA+  L LEG R+F L E   AIDA R  G  P+LLR
Sbjct:  134 NGARQAAGTWRSRAILTEASLVKVPIVGGSGAAAAGVLGEESSDGGGVGVEVAAHCSGSVATAIRILDDFVEKELGAGDRVVFTGASSA-----VAQAR-----CC---EEEAALALKLGAWKATLLKEFKAMRMDNACIVADGEGGVLGFTAARALRFRGCFVSYADLSGGGVSLPVAGQIFSDTKCRGFSLRRWASARPPSEKRDLVERSLGVAASAGLRLEGARDFPLREAALAIDAVRQTGC-PVLLR 371          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A671WYY0_SPAAU (Mitochondrial trans-2-enoyl-CoA reductase n=3 Tax=Sparus aurata TaxID=8175 RepID=A0A671WYY0_SPAAU)

HSP 1 Score: 92.0 bits (227), Expect = 9.370e-18
Identity = 72/237 (30.38%), Postives = 117/237 (49.37%), Query Frame = 3
Query:  120 GTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTG--QILLQLAAARGLESVCLVSNEEEV----ERATKLGASKAI---LLKEFKAMRMDDAC----LVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVET--RALAERSLEAAAAGALTLEGTREFELEEVTSAIDAARAP 785
            GTWRT A+L E  ++ +P D     +  + AA    +  TALR+L DF    L+ GD V+   A++G  Q ++Q+AAARG+ S+ +V +  E     +R   +GA+  I    L+  +   +   C    L  +G GG      +R L+  G  V+Y  ++   V++PV+  IF+D + RGF + +W    +  E   R + +        G LT     E  L++ + A+DAA  P
Sbjct:  138 GTWRTEAVLAENDVISLPND-----IPLLSAATLGVNPCTALRMLSDFED--LKPGDSVIQNAANSGVGQAVIQIAAARGINSINVVRDRPEFTQLSDRLKAIGATHVIKEEALRRPEIKELFKICPKPKLALNGVGGKSATELLRHLQLGGSMVTYGGMAKQPVTVPVSALIFKDVKVRGFWVTQWKKDHSKDERAFRVMLDELCNLIKQGKLTAPACTEVGLQDYSKALDAAMQP 367          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A671WS76_SPAAU (Mitochondrial trans-2-enoyl-CoA reductase n=14 Tax=Percomorphaceae TaxID=1489872 RepID=A0A671WS76_SPAAU)

HSP 1 Score: 92.0 bits (227), Expect = 9.790e-18
Identity = 72/237 (30.38%), Postives = 117/237 (49.37%), Query Frame = 3
Query:  120 GTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTG--QILLQLAAARGLESVCLVSNEEEV----ERATKLGASKAI---LLKEFKAMRMDDAC----LVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVET--RALAERSLEAAAAGALTLEGTREFELEEVTSAIDAARAP 785
            GTWRT A+L E  ++ +P D     +  + AA    +  TALR+L DF    L+ GD V+   A++G  Q ++Q+AAARG+ S+ +V +  E     +R   +GA+  I    L+  +   +   C    L  +G GG      +R L+  G  V+Y  ++   V++PV+  IF+D + RGF + +W    +  E   R + +        G LT     E  L++ + A+DAA  P
Sbjct:  143 GTWRTEAVLAENDVISLPND-----IPLLSAATLGVNPCTALRMLSDFED--LKPGDSVIQNAANSGVGQAVIQIAAARGINSINVVRDRPEFTQLSDRLKAIGATHVIKEEALRRPEIKELFKICPKPKLALNGVGGKSATELLRHLQLGGSMVTYGGMAKQPVTVPVSALIFKDVKVRGFWVTQWKKDHSKDERAFRVMLDELCNLIKQGKLTAPACTEVGLQDYSKALDAAMQP 372          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A8C4F5Y5_DICLA (Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4F5Y5_DICLA)

HSP 1 Score: 89.7 bits (221), Expect = 7.180e-17
Identity = 71/237 (29.96%), Postives = 117/237 (49.37%), Query Frame = 3
Query:  120 GTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTG--QILLQLAAARGLESVCLVSNEEEV----ERATKLGASKAI---LLKEFKAMRMDDAC----LVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVET--RALAERSLEAAAAGALTLEGTREFELEEVTSAIDAARAP 785
            GTWRT A+L E  ++ +P D     +  + AA    +  TA R+L DF    L+ GD V+   A++G  Q ++Q+AAARGL ++ +V +  E     +R   +GA+  I    L+  +   +   C    L  +G GG      +R L+F G  V+Y  ++   V++PV+  IF+D + RGF + +W   ++   T  R + +        G LT     E  L++ + A+D A  P
Sbjct:  156 GTWRTEAVLAEDDVISLPND-----IPLLSAATLGVNPCTAFRMLSDFED--LKPGDSVIQNAANSGVGQAVIQIAAARGLNTINVVRDRPEFTQLSDRLKAIGATHVIKEEALRRPEIKELFKTCPKPKLALNGVGGKSATELLRHLQFGGSMVTYGGMAKQPVTVPVSALIFKDVKVRGFWVTQWKKDQSNNGTAFRVMLDELCHLIRQGKLTAPVCTEVGLQDFSKALDTAMLP 385          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A671WS92_SPAAU (Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WS92_SPAAU)

HSP 1 Score: 84.3 bits (207), Expect = 2.460e-15
Identity = 60/187 (32.09%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  120 GTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTG--QILLQLAAARGLESVCLVSNEEEV----ERATKLGASKAI---LLKEFKAMRMDDAC----LVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRW 641
            GTWRT A+L E  ++ +P D     +  + AA    +  TALR+L DF    L+ GD V+   A++G  Q ++Q+AAARG+ S+ +V +  E     +R   +GA+  I    L+  +   +   C    L  +G GG      +R L+  G  V+Y  ++   V++PV+  IF+D + RGF + +W
Sbjct:  111 GTWRTEAVLAENDVISLPND-----IPLLSAATLGVNPCTALRMLSDFED--LKPGDSVIQNAANSGVGQAVIQIAAARGINSINVVRDRPEFTQLSDRLKAIGATHVIKEEALRRPEIKELFKICPKPKLALNGVGGKSATELLRHLQLGGSMVTYGGMAKQPVTVPVSALIFKDVKVRGFWVTQW 290          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A7S0TQL3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TQL3_HEMAN)

HSP 1 Score: 73.9 bits (180), Expect = 2.210e-11
Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  120 GTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGAS--TGQILLQLAAARGLESVCLVSNEEEVERAT----KLGASKAILLKEFKAMRMDDAC-------LVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRW 641
            G+W+T A++DEA +V V  D     + P  AA  S S + ALR+LEDF    L AGD ++   A+   GQ+L+QLAAARG++ + ++  +  +E  +     +G++  +   + ++  M +         +  DG GG  G    R +   G  VS+   SG  + +P        T+  GF L +W
Sbjct:  164 GSWQTHAVVDEAKVVKVRND-----IPPEYAACLSVSASAALRLLEDFEK--LSAGDVIIHNCANGMVGQVLIQLAAARGIKVISVLRAKATLEDLSDHLKSIGSTAVVPEPQLRSHYMQELLADLPAPKIAFDGVGGASGSLIARVMPKGGRMVSFGGASGEPLLLPAE----LGTKVEGFYLSQW 339          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: F8P3W8_SERL9 (PKS_ER domain-containing protein n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8P3W8_SERL9)

HSP 1 Score: 67.8 bits (164), Expect = 2.760e-9
Identity = 75/264 (28.41%), Postives = 121/264 (45.83%), Query Frame = 3
Query:  114 EAGTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGAS--TGQILLQLAAARGLESVCLVSNEEEVERATK----LGASKAILLKEF--KAMRMDDACLVADGEGGV---LGFTAV---------RALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVETRALAERSLEAAAAGAL--------TLEGTR--EFELEEVTSAIDA-ARAPGGGPILLRV 812
            +AGTW T   +    ++ VPR      +  + AA  + +  TA  +L DF    L  GD V+  GA+   GQ+++Q+AAA+GL+++ L+ N  ++   T+    LGA+  +   E   K+ R      V +  GG    LG   V         R L      VSY  +S   +S+P +  IF++  C GF   RW   +++ E   L E  +    AG L        T++G+   E   +++  AI   A+   G  ILL++
Sbjct:  144 QAGTWSTGMNVKPQDILKVPRS-----LNDVEAATITVNPPTAYNMLHDFVQ--LNEGDWVIQNGANGAVGQVVIQIAAAKGLKTINLIRNRNDIASLTEYLSNLGATHVVTYDELSDKSFRQR----VKEWTGGKNIRLGLNCVSGKPTTLMTRLLGQNAHLVSYGAMSKEPLSLPTSLFIFKNLTCHGFWQSRWYDSKSSGEREKLVETLVGLMRAGKLKEPSHEILTIQGSEGDEEASQKIRHAIATLAKGQHGKKILLKM 396          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: A0A8H5C6C4_9AGAR (PKS_ER domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C6C4_9AGAR)

HSP 1 Score: 64.3 bits (155), Expect = 4.000e-8
Identity = 62/198 (31.31%), Postives = 95/198 (47.98%), Query Frame = 3
Query:  105 TVPEAGTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTGAST--GQILLQLAAARGLESVCLVSNEEEVERA----TKLGASKAILLKEF--KAMRMDDACLVADGE---GGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVE 665
            T  ++GTW +  I+    +  VPR  A   +    AA  + +  TA  +L DF    L+ GD VV  GA++  GQ ++Q+AAA+G++++ LV N E ++      TKLGA+  +   E   KA+R          E   GG       R L      VSY  +S   +S+P +  IF++    GF   +W   R+A E
Sbjct:  143 TKQQSGTWMSERIVPVVDVAKVPRREA---LTEAQAATLTVNPPTAYNMLHDFVE--LKEGDWVVQNGANSAVGQAVIQIAAAKGIKTINLVRNRENLDELKQTLTKLGATHVLTYDELADKAVREKIKGWTKGKEIRLGGKETTMMARLLGKDAHLVSYGAMSKQPLSLPTSLFIFKNLTAHGFWQSQWYKTRSAEE 335          
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Match: M5G0M4_DACPD (NADP-binding protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5G0M4_DACPD)

HSP 1 Score: 61.6 bits (148), Expect = 2.820e-7
Identity = 58/214 (27.10%), Postives = 98/214 (45.79%), Query Frame = 3
Query:  105 TVPEAGTWRTSAILDEAFLVGVPRDGAGGCVEPMIAAHASASIATALRVLEDFSPKALEAGDRVVLTG--ASTGQILLQLAAARGLESVCLVSNEEEVERATK----LGASKAILLKEF---------------KAMRMDDACLVADGEGGVLGFTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGRTAVETRALAE 683
            + P+ GTW +  +  ++ ++ VPR      +  + AA  + +  TAL +L  F    LE G+ V+  G  +S GQ ++Q+A  RGL+++ LV + E++E+  +    LGA   +   E                K +R+   C+     GG       R L      VSY  +S   +S+P +  IF++  C G+   RW    +A E + L E
Sbjct:  124 STPQFGTWTSETLAKQSDIICVPRS-TNSILTEVQAATLTVNPPTALALLTRFVD--LEPGEFVIQNGGNSSVGQAVIQIAHQRGLKTINLVRDREQIEQLREQLRSLGADYVMTYNELGEQSARNTVREWTEGKPIRLGLNCV-----GGKDTTLMARFLGQDAHLVSYGAMSKAPLSLPTSLFIFKNLTCHGYWQSRWYLQHSAEERQQLIE 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55545.12973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LLP9_ECTSI8.100e-8963.67Zinc binding dehydrogenase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JRW4_9PHAE2.280e-7458.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A671WYY0_SPAAU9.370e-1830.38Mitochondrial trans-2-enoyl-CoA reductase n=3 Tax=... [more]
A0A671WS76_SPAAU9.790e-1830.38Mitochondrial trans-2-enoyl-CoA reductase n=14 Tax... [more]
A0A8C4F5Y5_DICLA7.180e-1729.96Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=... [more]
A0A671WS92_SPAAU2.460e-1532.09Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=... [more]
A0A7S0TQL3_HEMAN2.210e-1130.48Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
F8P3W8_SERL92.760e-928.41PKS_ER domain-containing protein n=2 Tax=Serpula l... [more]
A0A8H5C6C4_9AGAR4.000e-831.31PKS_ER domain-containing protein n=2 Tax=Tulosesus... [more]
M5G0M4_DACPD2.820e-727.10NADP-binding protein n=1 Tax=Dacryopinax primogeni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55545contigH-elongata_contig55545:1828..3843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue7.1e-67
Seed eggNOG ortholog2880.D8LLP9
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0604@1,KOG0025@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-04_004930.1
Exons4
Model size818
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55545.12973.1prot_H-elongata_contig55545.12973.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55545 1828..3640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.534767-CDS-H-elongata_contig55545:1827..20681622930905.534767-CDS-H-elongata_contig55545:1827..2068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 1828..2068 -
1691679619.186843-CDS-H-elongata_contig55545:1827..20681691679619.186843-CDS-H-elongata_contig55545:1827..2068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 1828..2068 -
1622930905.555046-CDS-H-elongata_contig55545:2470..26071622930905.555046-CDS-H-elongata_contig55545:2470..2607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 2471..2607 -
1691679619.1966302-CDS-H-elongata_contig55545:2470..26071691679619.1966302-CDS-H-elongata_contig55545:2470..2607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 2471..2607 -
1622930905.5726457-CDS-H-elongata_contig55545:3010..31301622930905.5726457-CDS-H-elongata_contig55545:3010..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 3011..3130 -
1691679619.2052917-CDS-H-elongata_contig55545:3010..31301691679619.2052917-CDS-H-elongata_contig55545:3010..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 3011..3130 -
1622930905.5865424-CDS-H-elongata_contig55545:3523..36401622930905.5865424-CDS-H-elongata_contig55545:3523..3640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 3524..3640 -
1691679619.2240899-CDS-H-elongata_contig55545:3523..36401691679619.2240899-CDS-H-elongata_contig55545:3523..3640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55545 3524..3640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.6023996-UTR-H-elongata_contig55545:3640..38431622930905.6023996-UTR-H-elongata_contig55545:3640..3843Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55545 3641..3843 -
1691679619.2369797-UTR-H-elongata_contig55545:3640..38431691679619.2369797-UTR-H-elongata_contig55545:3640..3843Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55545 3641..3843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55545.12973.1

>prot_H-elongata_contig55545.12973.1 ID=prot_H-elongata_contig55545.12973.1|Name=mRNA_H-elongata_contig55545.12973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MIAAHASASIATALRVLEDFSPKALEAGDRVVLTGASTGQILLQLAAARG
LESVCLVSNEEEVERATKLGASKAILLKEFKAMRMDDACLVADGEGGVLG
FTAVRALRFRGFYVSYADVSGGGVSIPVAGQIFRDTRCRGFSLQRWASGR
TAVETRALAERSLEAAAAGALTLEGTREFELEEVTSAIDAARAPGGGPIL
LRVR*
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mRNA from alignment at H-elongata_contig55545:1828..3843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55545.12973.1 ID=mRNA_H-elongata_contig55545.12973.1|Name=mRNA_H-elongata_contig55545.12973.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2016bp|location=Sequence derived from alignment at H-elongata_contig55545:1828..3843- (Himanthalia elongata Himel1 dioecious)
GGCGGAAGCGAGGGCCTCTGGGAGGTCACCGCCGTGGGTGAGGGCGTCTC TTCCCTCCAGCCGGGTGACCTTGCCGTGCCTACTGTTCCCGGGACCCCTC CGGGACGGTCCCTGAAGCTGGTACGTGGAGAACCTCGGCCATCCTCGATG AGGCGTTTCTTGTCGGGGTGCCAAGGGACGGGGCCGGAGGCTGCGTGGAG CCTATGATCGCGGCGCACGCTTCCGCGAGCATTGCCACGGCACTCCGGGT CCTCGAGGACTTCTCCCCGAAGGCGCTAGAGGCGGGAGATAGAGTGGTTT TGACGGGAGCCTCGACCGGCGTGGCACAGGCAAGCGAAGCTTTGTCCTCC AGAAAATATCTTGCTATTTAATAACAAAGTCGTGCCTTGAAATCTGACTC GTTGATTGGACACGAGAGTACTCGCGTTACGTCTTGGGTTTTCGTTGGCA GGCATTTTCGTGCCGATGTCCGCACCGACTACGCCATTTCCGCAGGAACG AATCTTCGCTGCGTCAGCATTCGCCGAGAGATTTTTTACGTGACCCTCTC ACACAACAGCATTACGCTCAAGGCCCCGCTTTGCACATGCCTCTGTAAAC CCCACTCTAGCAATCACCACTCGCTGGTATCACCGAGACCTTGCGTTCCC GACGACCGGTCCTGGTGAGCAGGTTTTGAATCACAACCCCCGCTCCCGTA TGCCCCTGCTCAGCAGATTCTACTGCAGCTCGCGGCAGCTCGAGGGCTGG AGAGCGTATGCCTTGTTTCCAACGAGGAAGAGGTCGAGCGCGCAACGAAG CTCGGCGCCTCGAAAGCGATACTGTTGAAAGAGGTAACCGACAGGAGGAC AAAGAGGTTCTGCCTGACGAACGCTGCACGCAGTCCACAGTCTGTACGAG CGAGCGATGCCTCTGTACGAATTTATGTACATACCCCACCCGGTGGCATA AGCCATGTTGCCGACCTCGACGTCTGGTCGGCCGGCGCCCCTCCCTATTT TTCCACCGCCTCTTCGTTCCATTCTGAGGCAATGAGGGTGTTGTGATGTT GAGCTCTGTGGTTCACCCCCTTCGCGTGGGCATGATTCCTCCCCCTCCCC TCACACTCACAAACCGCCTCCGGCGTGAAAAGCAAAACCTTGTTGGGATG CCTGCTACCTCCCGGTTCCTTCCTACCTCCCCTATCAAACGCTCATGCTC GCTGCGCCCCTCGTGTTCCTACGCGAATCATCGCAGTTCAAGGCGATGAG GATGGATGACGCCTGCTTGGTGGCGGACGGAGAAGGGGGTGTGCTCGGAT TCACGGCCGTGAGAGCGCTGCGGTTCCGCGGCTTCTACGTTTCCTATGCC GACGTTTCCGGAGGCGGTGTCAGGTGCTAAAGCGGGCGCGAGACATTTTC TTCCGCGTGAATTAGAGGCCAGTCCAGGCCGTTTTAGGAATTCGCCGTAG TATTTTGCGCATGGTTGTAACGATGGCAAGAGTATATTTTGAGGGTCTCC CTTCAAAGGAGGAGCACACGCCACGCCTCCCCAAGTATTTGCGTGCTTCT CTAGACTAGTGCCTCTCGCTTTTGTAATGAGAGCGCGAATGAGAAGAGGA TGTGCAAACCCACCCACGTCGCGTAACACCACGGGTTTCTCAACTCGTGC GCCTCGACGTCAAGAAATGCCTCTTGTGTTTGGAAAACCGGTGGTAGACG CCAGAGTGTGACTTTTGCGCGCGCCATAAAGACTTTAGAACGCGCCAACC CTCGCATTTCGTCCCTCCCTCACAGCATTCCTGTAGCGGGACAGATTTTT CGCGACACCCGATGCCGAGGCTTCTCTCTCCAGCGATGGGCGTCGGGTCG GACTGCGGTAGAGACGAGGGCTCTCGCGGAGCGATCTCTCGAGGCTGCCG CGGCGGGGGCCTTGACGCTGGAAGGCACACGGGAGTTCGAACTCGAGGAG GTGACGTCGGCAATCGACGCCGCGCGCGCACCTGGCGGGGGTCCCATTCT CCTTCGGGTGCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig55545:1828..3843-

>mRNA_H-elongata_contig55545.12973.1 ID=mRNA_H-elongata_contig55545.12973.1|Name=mRNA_H-elongata_contig55545.12973.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig55545:1828..3843- (Himanthalia elongata Himel1 dioecious)
ATGATCGCGGCGCACGCTTCCGCGAGCATTGCCACGGCACTCCGGGTCCT
CGAGGACTTCTCCCCGAAGGCGCTAGAGGCGGGAGATAGAGTGGTTTTGA
CGGGAGCCTCGACCGGCATGATCGCGGCGCACGCTTCCGCGAGCATTGCC
ACGGCACTCCGGGTCCTCGAGGACTTCTCCCCGAAGGCGCTAGAGGCGGG
AGATAGAGTGGTTTTGACGGGAGCCTCGACCGGCCAGATTCTACTGCAGC
TCGCGGCAGCTCGAGGGCTGGAGAGCGTATGCCTTGTTTCCAACGAGGAA
GAGGTCGAGCGCGCAACGAAGCTCGGCGCCTCGAAAGCGATACTGTTGAA
AGAGCAGATTCTACTGCAGCTCGCGGCAGCTCGAGGGCTGGAGAGCGTAT
GCCTTGTTTCCAACGAGGAAGAGGTCGAGCGCGCAACGAAGCTCGGCGCC
TCGAAAGCGATACTGTTGAAAGAGTTCAAGGCGATGAGGATGGATGACGC
CTGCTTGGTGGCGGACGGAGAAGGGGGTGTGCTCGGATTCACGGCCGTGA
GAGCGCTGCGGTTCCGCGGCTTCTACGTTTCCTATGCCGACGTTTCCGGA
GGCGGTGTCAGTTCAAGGCGATGAGGATGGATGACGCCTGCTTGGTGGCG
GACGGAGAAGGGGGTGTGCTCGGATTCACGGCCGTGAGAGCGCTGCGGTT
CCGCGGCTTCTACGTTTCCTATGCCGACGTTTCCGGAGGCGGTGTCAGCA
TTCCTGTAGCGGGACAGATTTTTCGCGACACCCGATGCCGAGGCTTCTCT
CTCCAGCGATGGGCGTCGGGTCGGACTGCGGTAGAGACGAGGGCTCTCGC
GGAGCGATCTCTCGAGGCTGCCGCGGCGGGGGCCTTGACGCTGGAAGGCA
CACGGGAGTTCGAACTCGAGGAGGTGACGTCGGCAATCGACGCCGCGCGC
GCACCTGGCGGGGGTCCCATTCTCCTTCGGGTGCGGTAACATTCCTGTAG
CGGGACAGATTTTTCGCGACACCCGATGCCGAGGCTTCTCTCTCCAGCGA
TGGGCGTCGGGTCGGACTGCGGTAGAGACGAGGGCTCTCGCGGAGCGATC
TCTCGAGGCTGCCGCGGCGGGGGCCTTGACGCTGGAAGGCACACGGGAGT
TCGAACTCGAGGAGGTGACGTCGGCAATCGACGCCGCGCGCGCACCTGGC
GGGGGTCCCATTCTCCTTCGGGTGCGGTAA
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