mRNA_H-elongata_contig55528.12970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55528.12970.1
Unique NamemRNA_H-elongata_contig55528.12970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: D7G5M6_ECTSI (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M6_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 8.130e-86
Identity = 142/186 (76.34%), Postives = 157/186 (84.41%), Query Frame = 1
Query:    1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWEGRGRGSLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            ++++IT+PIGVLL+VFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSN CLHRIIVDAVAEGS GRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSG LVN IK          VNYPSACNAAETIL+H+  +   +   +QV+ ALH AGVTVLGGP A+ LG+V  DK SPGFKTEYG+
Sbjct:  328 VLKQITSPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHRIIVDAVAEGSKGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGSLVNHIK----------VNYPSACNAAETILIHKALLEEGAGTCSQVVRALHSAGVTVLGGPRAVDLGVVGGDKISPGFKTEYGD 503          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A6H5JBC7_9PHAE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.830e-81
Identity = 145/212 (68.40%), Postives = 159/212 (75.00%), Query Frame = 1
Query:    1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            ++++IT+PIGVLL+VFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSN CLHRIIVDAVAEGS GRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSG LVN IKA       G   G                     + VNYPSACNAAETIL+H+  +   +    QV+ ALH  GVTVLGGP A+ LG+V  DK SPGFKTEYGE
Sbjct:  507 VLKQITSPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHRIIVDAVAEGSKGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGSLVNHIKASTKIPVMGHSEGICHVYIDKAADPTKAVEIAVDAKVNYPSACNAAETILIHKALLEEGAGTCAQVVRALHSTGVTVLGGPRAVDLGVVGGDKISPGFKTEYGE 718          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A835ZBW4_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.660e-61
Identity = 121/212 (57.08%), Postives = 144/212 (67.92%), Query Frame = 1
Query:    1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            +++++T PIGVLLVVFESRPDSLPQIASLA+RSGNGLLLKGGKEAEHSN CLH II DAV E + GRV R+ IGLV  R AV ELLKLD LIDLVIPRGSG+LVN IK+       G   G                     + +NYP+ACNA ET+LVH+DCV   + +  +V +AL  AG  VLGGP A+  G+  +   +P FKTEYGE
Sbjct:  443 VLKQVTTPIGVLLVVFESRPDSLPQIASLALRSGNGLLLKGGKEAEHSNACLHGIIADAVFESTGGRVCREVIGLVVGRQAVAELLKLDALIDLVIPRGSGELVNRIKSTTKIPVLGHAEGVCHMFIDTAADEAKAIALAVDAKINYPAACNALETLLVHQDCVA--TGLAKKVADALVSAGGKVLGGPRAIAAGLATEP--TPSFKTEYGE 650          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A1W0A8G2_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8G2_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.700e-55
Identity = 112/211 (53.08%), Postives = 137/211 (64.93%), Query Frame = 1
Query:    1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG----------------SLV-----NYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYG 555
            ++ ++T PIGVLL+VFESRPDSLPQIA+LA+RSGNGLLLKGGKEA HSN CLH++I DA+   + GRVPR  IGLVT+R  V ELLKLDH+IDL IPRGS  LV  IK        G   G                SLV     +YP+ACNA ET+LV  D V  DS     +++ALH AGV +L GP A  LG++ + +A+P    EYG
Sbjct:  398 VLEQLTCPIGVLLIVFESRPDSLPQIAALALRSGNGLLLKGGKEASHSNACLHKLIGDAIESETQGRVPRGVIGLVTTRDDVSELLKLDHVIDLCIPRGSNSLVTYIKKNTRIPVLGHAEGVCHMYIHSGANMEKAKSLVVDAKTDYPAACNALETLLV--DKVHVDSGAIQSIIDALHDAGVKILVGPTAASLGVLPEAEAAPSLSHEYG 606          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S2UVN0_9STRA (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN0_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.150e-55
Identity = 106/192 (55.21%), Postives = 124/192 (64.58%), Query Frame = 1
Query:   58 PDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYG 555
            PDSLPQIASLA+RSGNGLLLKGG+EAEHSN+ LHR+IVDAV   + G+V R+ IGLV SR+ V ELLKLD +IDLVIPRGSG LV +IK+       G   G                     S  NYP+ACNAAETIL HED V   + +  +VL  L  AGV VLGGP+A+  G+VD       FKTEYG
Sbjct:    1 PDSLPQIASLALRSGNGLLLKGGREAEHSNRALHRVIVDAVHSATGGKVSREVIGLVQSRSEVAELLKLDDVIDLVIPRGSGALVRSIKSGTRIPVLGHAEGICHVYVDKQADLKKAVALCVDSKTNYPAACNAAETILFHEDTVA--TGVANEVLRGLRQAGVQVLGGPLAISQGLVDARAPVETFKTEYG 190          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S2BH10_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BH10_9STRA)

HSP 1 Score: 191 bits (486), Expect = 9.220e-54
Identity = 108/209 (51.67%), Postives = 133/209 (63.64%), Query Frame = 1
Query:   10 KITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            +++ PIGVLL+VFESRPDSLPQIASLA+ SGNGLLLKGGKEAEHSN  LH+++VDAVA  S G+VPR+ +GLVTSR  V +LLKLD LIDLVIPRGS  LV  IK        G   G                       +NYP+ACNA ET+L+H+  V  DS     V+  L  AGV++ GGP A+  G++D   A+     EYG+
Sbjct:  425 QLSVPIGVLLIVFESRPDSLPQIASLALLSGNGLLLKGGKEAEHSNYTLHKVVVDAVAAASDGKVPREIVGLVTSRTQVSDLLKLDRLIDLVIPRGSKALVTNIKKNTRIPVLGHADGICHTYIDQHADDVKAAAIAVDGKINYPAACNATETVLIHQAKV--DSGGCATVMRELRKAGVSLKGGPNAIAQGLIDMSCAAKSLSVEYGD 631          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: W7U194_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U194_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.080e-53
Identity = 106/207 (51.21%), Postives = 134/207 (64.73%), Query Frame = 1
Query:   16 TAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            T PIGVLL+VFESRPDSLPQIA+LA+RSGNGLLLKGGKEA HSN+ LHR+I DA+   S GRVP + IGLVT+R+ V  LL+LD +IDLVIPRGS  LV +IK+       G   G                     +  +YP+ACNA ET+L+H   V   +   +++L AL  AGVTVLGGP A++ G+V    A+   + EYG+
Sbjct:  440 TVPIGVLLIVFESRPDSLPQIAALALRSGNGLLLKGGKEALHSNQVLHRVITDAMTTASEGRVPAEAIGLVTTRSEVSALLELDDVIDLVIPRGSSALVRSIKSSTRIPVLGHAEGVCHIYVDKGADLRKAARIVVDAKTDYPAACNAVETLLLHRSFVADGAIGASKLLRALMSAGVTVLGGPEAVKEGLVSPGHAAKDLRQEYGD 646          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S4S1J2_9STRA (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S1J2_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.100e-50
Identity = 104/208 (50.00%), Postives = 130/208 (62.50%), Query Frame = 1
Query:   13 ITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            IT PIGVL+++FESRPDSLPQI++LA+ SGNGLLLKGGKEA HSN  LHR+I DA+  GS G V RD I LVTSR  V ++L LD +IDLVIPRGS  LV+ IKA       G   G                     + ++YPSACNA ET+L+H+D +   +++   VL  L  AGV  LGGP A+++GI D        K EYG+
Sbjct:  213 ITVPIGVLMIIFESRPDSLPQISALALASGNGLLLKGGKEAVHSNAALHRVIGDAIESGSGGNVKRDIIALVTSRGQVADMLGLDDVIDLVIPRGSNALVSYIKANTRIPVLGHADGVCHVYVDKSAKSEDATKLVVDAKIDYPSACNAMETLLLHKDTI--GNTVAMNVLMGLRRAGVKCLGGPRAMKMGICDVPAEQ--MKCEYGD 416          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S2WAW7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAW7_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.350e-50
Identity = 105/212 (49.53%), Postives = 129/212 (60.85%), Query Frame = 1
Query:    1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
            ++ K+T PIGVLL++FESRPDSLPQIA+LAIRSGNGLLLKGG+EAEHSN  LHRIIV AV   + G+V +D + LVTSR  V  LL LD  IDLV+PRGS  LV  IK        G   G                     S  +YP+ACNAAETIL+HE       ++   +L  L  AGVT+ GG  A+ LG++    A+    TEYG+
Sbjct:  420 ILSKVTVPIGVLLIIFESRPDSLPQIAALAIRSGNGLLLKGGREAEHSNATLHRIIVTAVQTATAGKVSQDLVSLVTSREQVSSLLALDDCIDLVVPRGSKALVEHIKQHTRIPVLGHADGICHVFVDESADLEKAVDIAIDSKTDYPAACNAAETILIHEAAA---ETMGGTILGGLRRAGVTIKGGARAVALGMIPHSDAAESMSTEYGD 628          
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A6G0WZZ7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZZ7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.740e-49
Identity = 103/211 (48.82%), Postives = 130/211 (61.61%), Query Frame = 1
Query:    1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYG 555
            ++ ++T PIGV+LVVFESRPDSLPQIA+LA+RSGNGL+LKGGKEA HSN CLH ++  A+ E + GRVP   IGLVTSR  VG LL LDH+IDL IPRGS  LV  IK        G   G                     +  +YP+ACNA ET+++ E+ VV  S   + +L+AL  AGVT+  GP A R  ++    A+P    EYG
Sbjct:  395 VLEQVTTPIGVILVVFESRPDSLPQIAALALRSGNGLILKGGKEARHSNACLHSLVQAAIREETKGRVPESVIGLVTSRDDVGALLALDHVIDLCIPRGSNSLVTHIKKNTKIPVLGHAEGVCHMYIHAKADIAKAARLAVDAKTDYPAACNALETLVLDEEVVV--SGAHSSILSALADAGVTLHVGPEAARRQLIPHAPAAPSLSHEYG 603          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5M6_ECTSI8.130e-8676.34Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A6H5JBC7_9PHAE1.830e-8168.40Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A835ZBW4_9STRA1.660e-6157.08Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=T... [more]
A0A1W0A8G2_9STRA3.700e-5553.08Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=T... [more]
A0A7S2UVN0_9STRA4.150e-5555.21Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Fib... [more]
A0A7S2BH10_9STRA9.220e-5451.67Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=D... [more]
W7U194_9STRA2.080e-5351.21Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=M... [more]
A0A7S4S1J2_9STRA2.100e-5050.00Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Dit... [more]
A0A7S2WAW7_9STRA2.350e-5049.53Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=R... [more]
A0A6G0WZZ7_9STRA1.740e-4948.82Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55528contigH-elongata_contig55528:886..3832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue2.5e-71
Seed eggNOG ortholog2880.D7G5M6
Preferred nameALDH18A1
KEGG rclassRC00002,RC00043,RC00684
KEGG koko:K12657
KEGG ReactionR00239,R03313
KEGG Pathwayko00330,ko01100,ko01110,ko01230,map00330,map01100,map01110,map01230
KEGG ModuleM00015
GOsGO:0000003,GO:0000052,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004349,GO:0004350,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006592,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009266,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010035,GO:0010154,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016772,GO:0016774,GO:0016903,GO:0017084,GO:0018130,GO:0019202,GO:0019240,GO:0019752,GO:0019866,GO:0022414,GO:0022622,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042538,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0048229,GO:0048316,GO:0048364,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0055044,GO:0055114,GO:0061458,GO:0071704,GO:0099402,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700
EggNOG free text desc.glutamate-5-semialdehyde dehydrogenase activity
EggNOG OGsCOG0014@1,COG0263@1,KOG1154@2759,KOG4165@2759
EC1.2.1.41,2.7.2.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondelta-1-pyrroline-5-carboxylate synthase
Ec32 orthologEc-07_007490.1
Exons4
Model size558
Cds size558
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55528.12970.1prot_H-elongata_contig55528.12970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55528 886..3832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.9008663-CDS-H-elongata_contig55528:885..10021622930904.9008663-CDS-H-elongata_contig55528:885..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 886..1002 -
1691679618.9268374-CDS-H-elongata_contig55528:885..10021691679618.9268374-CDS-H-elongata_contig55528:885..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 886..1002 -
1622930904.9422622-CDS-H-elongata_contig55528:1189..12761622930904.9422622-CDS-H-elongata_contig55528:1189..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 1190..1276 -
1691679618.9395351-CDS-H-elongata_contig55528:1189..12761691679618.9395351-CDS-H-elongata_contig55528:1189..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 1190..1276 -
1622930904.9625494-CDS-H-elongata_contig55528:2951..31441622930904.9625494-CDS-H-elongata_contig55528:2951..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 2952..3144 -
1691679618.9486992-CDS-H-elongata_contig55528:2951..31441691679618.9486992-CDS-H-elongata_contig55528:2951..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 2952..3144 -
1622930904.9755108-CDS-H-elongata_contig55528:3671..38321622930904.9755108-CDS-H-elongata_contig55528:3671..3832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 3672..3832 -
1691679618.957717-CDS-H-elongata_contig55528:3671..38321691679618.957717-CDS-H-elongata_contig55528:3671..3832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55528 3672..3832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55528.12970.1

>prot_H-elongata_contig55528.12970.1 ID=prot_H-elongata_contig55528.12970.1|Name=mRNA_H-elongata_contig55528.12970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNK
CLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGS
GKLVNTIKAWEGRGRGSLVNYPSACNAAETILVHEDCVVGDSSIFTQVLN
ALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE
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mRNA from alignment at H-elongata_contig55528:886..3832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55528.12970.1 ID=mRNA_H-elongata_contig55528.12970.1|Name=mRNA_H-elongata_contig55528.12970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2947bp|location=Sequence derived from alignment at H-elongata_contig55528:886..3832- (Himanthalia elongata Himel1 dioecious)
TTGATTCGAAAGATCACGGCGCCTATCGGAGTTTTACTGGTGGTGTTCGA GTCTCGTCCAGACTCTCTACCCCAGATCGCTTCCCTTGCGATACGGTCGG GCAACGGGCTACTGCTCAAGGGCGGGAAGGAGGCTGAGCACTCGAACAAA TGCCTGCATAGGTAGGAGTGGTGCAGCAGCAAACGAAATCCTGACTGCCA CCCCTGGCGTACTCTTCCTCTGGCTGGTACGGTTTAGCCATACAGTAGAG GGTAGTACACCACGCTACACTATACGAAACTATACTAAACTTTACTTCAA TTACTAGGAAGTATTACAATACTTTATTTAGTACACTACATTATACTAGT GTATAGTATACCGTAGTATACTGCACCACACTGAGCTATTCTATACTATT AATAGTACATATTTTTGTTAAGTACACTCTATTATAATAATATACTATAC TTGACCGTACTGCGCTTTTCTATACTGTGACAACTCTTTATTTAAGACAT TAGAGACTGCACCACAATGGTCACTGTTTACGATGCCATACTTTATTTAG CACACGATATGCAGTAGACTGTAGACCATGTTATACTTAAGTATATTGCA CTACACCAGCAATTTCCAGACAGGATCGGTCTCAGGTTCTCCGCAAGCTA GACGTTAATCACCCCCCCCTTTCCCACCGCACGTGCAGGATCATCGTGGA CGCCGTGGCTGAGGGTTCCGTGGGACGCGTTCCTCGGGACTGCATCGGTC TTGTAACGTCTCGGGCGGCGGTTGGAGAGCTCCTGAAGCTGGACCACCTT ATCGACCTCGTCATCCCCAGGGGCTCTGGCAAGCTCGTCAACACCATCAA GGCATGGGAAGGGCGTGGGAGGGGTAGCTTGGTTGGGATGTTCGGTATGG ATTGGATGGAACAATATTGGCTGGGAAACGTGTGGCATGGGCAACGCGTG TATCGGGCGATTGGGTGAAATGGTTGAGGATGAGATCGTGAGGGATGCGG TAAGCTAGCAGGTTTCATAGATTTTGACCAAACTTAGCCGGTGTCGGCAA CAAAAAGGTGTGGCTGATCAATCGACGGGAAGGCTTTGGAAGAGTTCAAA GCTTTCCAAGATAACTATGCAACAATGGTATGTGTATTTTTGTGATCGAA TGAGATAGTATTTGCGAAGACAAGTTTGACATGGGGTAATGGAATGGGAT GGGATGAAATGGAGCCCAGATGGACGATATGAAATGGGAATGGATGGTAT ATTTTTTCATGGTACGTTGAATATGTTGGGATGGCGTAGAACGCCCCCCC CTCCCCCCCCCATCCTCTTCTTCCTATGCCCTCGATAGTACACTAGTACA GTATAGTTTTATACCCAGCACTCGGTCGTCCTCACCGGCTGCGGTTCGTG CTACCGCAATGAAATGTACGGTCGAAAATAGCCTAGGATAGGAAATCAGC TATTATAACTCCTTGTCTCTAGTGTTCTAGTGTTGCCATGGTGCACCGTA GTCCCTAGTGTGGAACGCTTTGAGATAACCGTGGGACAGGCCCACGTTTA TCGGATCCCCAGAATCCATATTTGCCCCCCCCCCCCCCCCCCCCCCCCCA ACAAAAAAAAAAAAAAAGGAGGGGGGCGGACCCCCCCTTTCTTACCCCGG TTTCCGGGCCCCCAAAGTTCCTCTTTGCCCCCCCCCCCCCCACCTATCCA CAAACAATCAGAAGGAAAGGGACGGGTGATGACGGCCATCTTTCATCACC CGCAACTCCGTCCGCATGCTTCTGTGTGTATCTTCGTTATTGTTCAAATA AATCTCCCGTTTTCGGCAGGCCTCAACCAAGATCCCCGTCATGGGCCACA GTGAGGGCATATGCCACGTGTATATCGACAAGGAGGCCGATCCTGCGAAG GCTGCCGAGATCGCGGTCGACGCGAAGGTAGCTAGCGAGTTCTACACGGC CCGGAAGAGCATCCTTTGGTTGTAGGGAAGCGGTTCCTTTTTTTATTGCA AGGATTATTTGTTATTTTCCTCTTTTTATTATGTGCATGGGCTATTTCTA TGTAGATTATTGTAGAATATTGTAGATTAATGTAGATTTTTGTAAAAAAG TGCCAAGTTAGTTGGAGACGTGCCATCGCGGTTGCGCAGACTTACGTAGA AATGTTCGTGCCTGCTTGTTTCCCCCCTGGTGGCACATCCATTCTCAGGG TCAAAAGGCCGACAACGGGTAACAGCTGCACGCCGTCCCGTCCCGTTGTA TCCCACCGTGGGAAAGTAACGGCATTAATTTTTCACCTGTGGCGAGAGAA AAGAGAGGCCCATTCGATAAATAGCGTTCTATAAATAGCGAAAACTAAAA TCCCCGAAACGTCGCTTTCCAAACTCGAAGTCCTTAGGGTTTGACGAGTA CAATGGTGTATCGGTACGTTGCCGAAACGAGCGGTGCCGCTTTTTCTACA TTTTTGTTTTCTTCATTTTTCTTCATTTTTTTTCCTTCTTTCTTCTTCTT TTTGTTCTTTTTTATTTTCCTTCTTTTGTTATTTTGTTTTCTTCCTTGTA TATAAGGTGAACTACCCTTCGGCGTGCAACGCGGCGGAAACGATCCTCGT CCACGAAGACTGCGTCGTCGGAGACTCTTCCATCTTCACCCAGGTGACCG TCTCCCCCTCCCCCCACCTGAGCACACCAATCACGTTGGAAAACCCTCCC AAGGATAGACGCGAAGCCCGTTCGGTGTCTCTCCTCTGAAAAGCTTGTCG TGTGCTTGTGGGGGGTTTCCGTTTTATTGTGAGTCTGTGGCGTGTTTGTG TTTGCCCAACGTTGCGAAAATGGCGTGTAGGTTCTGAATGCGCTTCACGG AGCGGGGGTCACGGTGCTGGGGGGTCCCGTGGCGCTGAGGCTGGGCATCG TCGATAAGGACAAGGCCTCGCCAGGCTTCAAAACCGAGTACGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig55528:886..3832-

>mRNA_H-elongata_contig55528.12970.1 ID=mRNA_H-elongata_contig55528.12970.1|Name=mRNA_H-elongata_contig55528.12970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig55528:886..3832- (Himanthalia elongata Himel1 dioecious)
TTGATTCGAAAGATCACGGCGCCTATCGGAGTTTTACTGGTGGTGTTCGA
GTCTCGTCCAGACTCTCTACCCCAGATCGCTTCCCTTGCGATACGGTCGG
GCAACGGGCTACTGCTCAAGGGCGGGAAGGAGGCTGAGCACTCGAACAAA
TGCCTGCATAGTTGATTCGAAAGATCACGGCGCCTATCGGAGTTTTACTG
GTGGTGTTCGAGTCTCGTCCAGACTCTCTACCCCAGATCGCTTCCCTTGC
GATACGGTCGGGCAACGGGCTACTGCTCAAGGGCGGGAAGGAGGCTGAGC
ACTCGAACAAATGCCTGCATAGGATCATCGTGGACGCCGTGGCTGAGGGT
TCCGTGGGACGCGTTCCTCGGGACTGCATCGGTCTTGTAACGTCTCGGGC
GGCGGTTGGAGAGCTCCTGAAGCTGGACCACCTTATCGACCTCGTCATCC
CCAGGGGCTCTGGCAAGCTCGTCAACACCATCAAGGCATGGGAAGGGCGT
GGGAGGGGTAGCTTGGATCATCGTGGACGCCGTGGCTGAGGGTTCCGTGG
GACGCGTTCCTCGGGACTGCATCGGTCTTGTAACGTCTCGGGCGGCGGTT
GGAGAGCTCCTGAAGCTGGACCACCTTATCGACCTCGTCATCCCCAGGGG
CTCTGGCAAGCTCGTCAACACCATCAAGGCATGGGAAGGGCGTGGGAGGG
GTAGCTTGGTGAACTACCCTTCGGCGTGCAACGCGGCGGAAACGATCCTC
GTCCACGAAGACTGCGTCGTCGGAGACTCTTCCATCTTCACCCAGGTGAA
CTACCCTTCGGCGTGCAACGCGGCGGAAACGATCCTCGTCCACGAAGACT
GCGTCGTCGGAGACTCTTCCATCTTCACCCAGGTTCTGAATGCGCTTCAC
GGAGCGGGGGTCACGGTGCTGGGGGGTCCCGTGGCGCTGAGGCTGGGCAT
CGTCGATAAGGACAAGGCCTCGCCAGGCTTCAAAACCGAGTACGGTGAGG
TTCTGAATGCGCTTCACGGAGCGGGGGTCACGGTGCTGGGGGGTCCCGTG
GCGCTGAGGCTGGGCATCGTCGATAAGGACAAGGCCTCGCCAGGCTTCAA
AACCGAGTACGGTGAG
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