mRNA_H-elongata_contig55496.12965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55496.12965.1
Unique NamemRNA_H-elongata_contig55496.12965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A6H5JQ77_9PHAE (EDR2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ77_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 7.130e-35
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 3 
Query:  309 QIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDMVWAI 515
             IV+GNWVVKRAAG+TPAILGTKLKQHHF+GDNYLETDLEIASSS+AANITRLC GYAKSLVVDMVW I
Sbjct:  118 SIVQGNWVVKRAAGSTPAILGTKLKQHHFKGDNYLETDLEIASSSLAANITRLCTGYAKSLVVDMVWTI 186
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: F0XXJ4_AURAN (EDR2_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXJ4_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 8.660e-21
Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:  309 QIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDM 503
            ++V+ NWVV+RA G  P +LG KLKQH+FRG +YLE D++IASS++AA++ RLC GYAK+LVVD+
Sbjct:  135 RVVDANWVVRRAVGQNPVLLGKKLKQHYFRGPDYLELDIDIASSAVAASVVRLCGGYAKALVVDI 199
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: W7TJE2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-19
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDM 503
            L+ +IVEGNWVV+++ G+TPAILGTKLKQ + +G NY E D+ IASSS+AA + RL AGYAK+LVVD+
Sbjct:  822 LIPKIVEGNWVVRKSVGSTPAILGTKLKQTYHKGTNYFELDVNIASSSVAAGVVRLAAGYAKTLVVDL 889
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A7S2FI89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI89_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.860e-18
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:  312 IVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDMVWAI 515
            I+EG W+V+ A    PA++G KLKQ +FRG+ Y+ETD+ I SS+IA NIT LC GYAK++VVD+ + +
Sbjct:    2 IIEGPWIVRSAVPVKPALMGRKLKQRYFRGEGYVETDIHIGSSAIANNITGLCRGYAKAMVVDLAFCL 69
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A7S0CIE5_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIE5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.060e-17
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDM 503
            L+ QIVEGN++V+RA G+TPAI+G KLKQ++FRG+ Y E  L+I SSS+A ++ RL  GYA +LVVDM
Sbjct:  163 LIPQIVEGNFMVRRAVGSTPAIMGNKLKQYYFRGERYFELLLDITSSSVATSVVRLSLGYAATLVVDM 230
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A835Z631_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z631_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.110e-17
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDN--------------YLETDLEIASSSIAANITRLCAGYAKSLVVDMVWAI 515
            L+ +I EGNWVV+RA   TPAILG KL+Q HFRGD               YLET ++I SSSIAA+ITRL  GYAK+LVV++ W +
Sbjct: 1148 LVPRITEGNWVVRRACPPTPAILGAKLRQAHFRGDRCGTXXXXXXXXXXRYLETSVDIGSSSIAASITRLSIGYAKTLVVELAWTL 1233
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BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A7S2ESX4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESX4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.810e-17
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDM 503
            L+ QIVEGN+VV++A G+TPAI+GTKLKQ + R D + E  L+I SSS+AA + RLC+GYAK +VVD+
Sbjct: 1150 LIPQIVEGNFVVRKAVGSTPAIMGTKLKQTYVRTDRFFEVVLDIGSSSVAAGVIRLCSGYAKQIVVDL 1217
[Close]
BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A7S2NZD6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZD6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.310e-16
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDMVWAI 515
            L+ QI+EGN++V++A G+TPAI+GTKLKQ + R D Y E  L+I SSS+AA + RL +GYAK+L+VDM + +
Sbjct: 1213 LIPQIIEGNFIVRKAVGSTPAIMGTKLKQLYSRTDRYFEIILDIGSSSVAAGVIRLASGYAKTLIVDMAFVL 1284
[Close]
BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: D7FKP5_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.330e-16
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEI 431
            L+ +IVEGNWVVKRAAG+TPAILGTKLKQHHF+GDNYLETDLEI
Sbjct:  834 LIPKIVEGNWVVKRAAGSTPAILGTKLKQHHFKGDNYLETDLEI 877
[Close]
BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Match: A0A7S1UFX1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFX1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.270e-16
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 3 
Query:  300 LLFQIVEGNWVVKRAAGTTPAILGTKLKQHHFRGDNYLETDLEIASSSIAANITRLCAGYAKSLVVDM 503
            L+ +IVEGN+VV+R  G+TPA+LGTKLKQ++ R  +Y E D++I SSS+AA + RL  GYA ++ VDM
Sbjct:  202 LIPKIVEGNFVVRRVVGSTPAVLGTKLKQYYHRAPHYFELDVDIGSSSVAAGVVRLSLGYATTITVDM 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55496.12965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ77_9PHAE7.130e-3589.86EDR2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
F0XXJ4_AURAN8.660e-2161.54EDR2_C domain-containing protein (Fragment) n=1 Ta... [more]
W7TJE2_9STRA1.420e-1964.71Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2FI89_9STRA2.860e-1854.41Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0CIE5_9STRA1.060e-1760.29Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A835Z631_9STRA1.110e-1754.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2ESX4_9STRA3.810e-1760.29Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2NZD6_9STRA1.310e-1655.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7FKP5_ECTSI2.330e-1688.64START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1UFX1_9STRA4.270e-1655.88Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55496contigH-elongata_contig55496:655..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size518
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55496.12965.1prot_H-elongata_contig55496.12965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55496 881..1619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.4835095-UTR-H-elongata_contig55496:654..8801622930904.4835095-UTR-H-elongata_contig55496:654..880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55496 655..880 +
1691679618.771625-UTR-H-elongata_contig55496:654..8801691679618.771625-UTR-H-elongata_contig55496:654..880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55496 655..880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.5026977-CDS-H-elongata_contig55496:880..10861622930904.5026977-CDS-H-elongata_contig55496:880..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55496 881..1086 +
1691679618.7817287-CDS-H-elongata_contig55496:880..10861691679618.7817287-CDS-H-elongata_contig55496:880..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55496 881..1086 +
1622930904.527557-CDS-H-elongata_contig55496:1534..16191622930904.527557-CDS-H-elongata_contig55496:1534..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55496 1535..1619 +
1691679618.792782-CDS-H-elongata_contig55496:1534..16191691679618.792782-CDS-H-elongata_contig55496:1534..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55496 1535..1619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55496.12965.1

>prot_H-elongata_contig55496.12965.1 ID=prot_H-elongata_contig55496.12965.1|Name=mRNA_H-elongata_contig55496.12965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MFSACGVGRSRSSSWARVCVLNACSSFPDCGGKLGREAGRGHDSGHSGYE
AQTAPLQGGQLPRDGPGDRFLEHRGEHHALVCRLRQIFGCGHGVGDS
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mRNA from alignment at H-elongata_contig55496:655..1619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55496.12965.1 ID=mRNA_H-elongata_contig55496.12965.1|Name=mRNA_H-elongata_contig55496.12965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig55496:655..1619+ (Himanthalia elongata Himel1 dioecious)
GACCACCAAACGCTTATTGTGCCCAAGACGCTAACGTTGAAGCTGAAACG
AAAAGTCACACCAGGCAGAACGTTGCATCGTCGCTGCCCATCGGCCAACA
TGTCGACGCCAAACGTTGCATCGTTGCTGGTGGAGCTTTGCTAGTAGTAC
GGCATTTCGACATTTCTTGGTCCTCAGCCAACCCCCTACGCCTCCCCAAA
CCCAATCCACGAGATAAAACTACTGAATGTTCAGCGCCTGCGGAGTGGGG
CGGAGTAGAAGTTCATCGTGGGCGCGTGTGTGTGTTTTGAATGCGTGTTC
TTCTTTTCCAGATTGTGGAGGGAAACTGGGTCGTGAAGCGGGCCGCGGGC
ACGACTCCGGCCATTCTGGGTACGAAGCTCAAACAGCACCACTTCAGGGG
GGACAACTACCTCGAGACGGACCTGGAGATCGGTGTGTCGGCCGTTTTGA
AATGAAATCTATTGGTAGCGTGCAGCAGCTATACAATGTTTTAAAACTTT
CGTGACTTCATGTCTCTCCTTTCGTGACTGCATGTCTCTCCTTTCGAAGA
GTATTTTTCTAATCCGTCACACACAAGAATAAAAAAGGATTAATTAGCCG
TCTCGTACTGCCTCGCCTGCTGTGCCGGTGATCTGCTGCATGGACTGTAT
AGAGACTCCCAGTGTTGTCGATCGCACAAGCTCTTAAACCTTTTGAATAT
TTCGTTTTGTTGTAATCCCCCCCCCTCCCCTCCGCACACACACGCCATCA
CAACCCAACATGCCCAACATATGGACTTGTGAACAGCTGATAATTTGTCC
CAATACACTGTTGGTCGCTTCTTAAAACTATTGGATACACGTCTATTAAA
AAAATCTACGGGGTATATCCCCGCCGTCAGCTTCCTCGAGCATCGCGGCG
AACATCACGCGCTTGTGTGCCGGCTACGCCAAATCTTTGGTTGTGGACAT
GGTGTGGGCGATTCA
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Coding sequence (CDS) from alignment at H-elongata_contig55496:655..1619+

>mRNA_H-elongata_contig55496.12965.1 ID=mRNA_H-elongata_contig55496.12965.1|Name=mRNA_H-elongata_contig55496.12965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig55496:655..1619+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAGCGCCTGCGGAGTGGGGCGGAGTAGAAGTTCATCGTGGGCGCG
TGTGTGTGTTTTGAATGCGTGTTCTTCTTTTCCAGATTGTGGAGGGAAAC
TGGGTCGTGAAGCGGGCCGCGGGCACGACTCCGGCCATTCTGGGTACGAA
GCTCAAACAGCACCACTTCAGGGGGGACAACTACCTCGAGACGGACCTGG
AGATCGATGTTCAGCGCCTGCGGAGTGGGGCGGAGTAGAAGTTCATCGTG
GGCGCGTGTGTGTGTTTTGAATGCGTGTTCTTCTTTTCCAGATTGTGGAG
GGAAACTGGGTCGTGAAGCGGGCCGCGGGCACGACTCCGGCCATTCTGGG
TACGAAGCTCAAACAGCACCACTTCAGGGGGGACAACTACCTCGAGACGG
ACCTGGAGATCGCTTCCTCGAGCATCGCGGCGAACATCACGCGCTTGTGT
GCCGGCTACGCCAAATCTTTGGTTGTGGACATGGTGTGGGCGATTCACTT
CCTCGAGCATCGCGGCGAACATCACGCGCTTGTGTGCCGGCTACGCCAAA
TCTTTGGTTGTGGACATGGTGTGGGCGATTCA
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