mRNA_H-elongata_contig55475.12962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig55475.12962.1
Unique Name	mRNA_H-elongata_contig55475.12962.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 9.650e-77
Identity = 193/397 (48.61%), Postives = 236/397 (59.45%), Query Frame = 1

Query:  556 RVVNVQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTNQTGVKSTAPPAAEERTLPFSHLAGAGAGAIA---NGRSRVQSSSAVDDFGACGAQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPTVAVPAAVAAVPLGTPLASVVGAGTTGV------------------------LEATSRALSHVNYEKVFRTVPMPMAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMISSILSLRGVA-DPPFFQVLGKRRDGS-SAGVVQISIVQDDALRPLHFCICIMENTA 1659
            +   VQN+RRLERNAREQKRSLKISQRIE+LRRML++FGVDVKASKS+VLSEATDYIAHLQRQHAQSEAERAR+L LL N++  AA                                          +R        GAG G +    +  + + +  ++DD G  G +PT        A+  +++ +     P       G E + PG      P+++  A   A   G P+A    AG                            L AT+RALSHVNYE+VFRT+PMPMAIANVNGNLVDCN RLTQ TGFR+EEALF++IFDL+ADPFLQHTFSMISSILS+RGV  +PPFFQV GK  +G+   GVVQIS V DD LRP+HFCICI+++ A
Sbjct:  263 KAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSR--AASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDR--------GAGVGVVVERPSSNTMLDTLLSLDDDGDMG-RPTS-------AMTAARAMVFPPPTPPQQ----GEEQIVPG-----FPSLSATARRGAD--GMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPA 630

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.050e-20
Identity = 102/365 (27.95%), Postives = 144/365 (39.45%), Query Frame = 1

Query:  568 VQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTNQTGVKSTAPPAAEERTLPFSHLAGAGAGAIANGRSRVQSSSAVDDFGACGAQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPTVAVPAAVAAVPLGTPLASVVGAGTTGVLEATSRALSHVNYEKVFRTVPMPMAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMISSILSLRGVADPPFFQ------VLGKRRDGSSAGVVQISIVQDDALRPLHFCICI 1644
            V ++RRLERNAREQ+RSLKISQ+I+ELR +L + GV VK+SKS++L EAT  I  LQR+ A  E ER  LL L+Q                                                                   +G S  Q+                                          A VG                                                    ++Y+ +F    +P+A+ +VNGN+VDCNAR+   TG+RREE L L++F+L+AD FLQ +F++IS +L++ G A     Q      +  K RDG   GV+ I++V+D+ LRP  F I +
Sbjct:   64 VVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQGL-----------------------------------------------------------------SGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXASVG----------------------------------------------------MDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAISL 304

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.260e-20
Identity = 98/357 (27.45%), Postives = 137/357 (38.38%), Query Frame = 1

Query:  574 NRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTNQTGVKSTAPPAAEERTLPFSHLAGAGAGAIANGRSRVQSSSAVDDFGACGAQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPTVAVPAAVAAVPLGTPLASVVGAGTTGVLEATSRALSHVNYEKVFRTVPMPMAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMISSILSLRGVADPP--FFQVLGKRRDGSSAGVVQISIVQDDALRPLHFCI 1638
            ++RRLERNAREQKRSLKISQRI+ELR +L + G+ VK SKS VL E T+ I  L RQ    EAERA +L L+Q    G                                                               G ++                                             A VG                                                    ++Y+ +F    +P+A+ ++NGN+V+CN+R+  ATGFRR+E L L++F+L+AD +LQ +F++IS  LS    A  P     +  K RDG   GV+ +S+V+DD +RP  F I
Sbjct:   19 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAG---------------------------------------------------------------GNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVG----------------------------------------------------MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAI 260

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.370e-7
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1

Query:  571 QNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFAS-TNQTGVK 915
            + +RR ERN REQKRSLKIS++I+EL  +LT  G  VKA+KSS+L EA  YI HLQ   A+ E ER++ + +L         GA+ IS    G D+A   A++    S ++ TG K
Sbjct:   99 EKKRRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNILTTN------GASGISGIKDGFDDANFKASIAALMSDSDATGGK 208

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S0GE46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GE46_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.260e-6
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1

Query:  565 NVQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGA 810
            N+   +R ERNARE++RS +IS +I+ELR +L+  GV V K +KSSVL+EA +YI  LQ+   +SE ER++L+  +Q    GA
Sbjct:   15 NLNEEKRGERNAREKERSFRISCQIDELRNLLSMGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEMERSQLVQQIQMIGAGA 97

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S2S9S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9S4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-5
Identity = 39/76 (51.32%), Postives = 57/76 (75.00%), Query Frame = 1

Query:  568 VQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQ 792
            VQ+ +R ERNARE++RS +IS++I+ELR +L+  GV V K +KSSVLSEA +YI  LQ+   +SE +R +L+  +Q
Sbjct:  280 VQDNKREERNAREKERSFRISRQIDELRSLLSSGGVIVPKGTKSSVLSEAANYIRMLQQHQYRSEIDRHQLIQQMQ 355

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7R9U539_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U539_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.460e-5
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 1

Query:  571 QNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLL 789
            + RRR ERN REQ+RSLKIS++I+EL  +LT  G +VK +KS++L++A  YI +LQ   A+ E ER + + +L
Sbjct:  154 EKRRRKERNQREQRRSLKISKKIDELHEILTGSGRNVKPNKSAILNDAHQYIQYLQSTMARKEFERNQFVDVL 226

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.360e-5
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1

Query:  556 RVVNVQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQ 792
            R   +  R+R+ERNARE++RS +IS++I ELR +L+  GV V K +KSSVL+EA +YI  LQ+   +SE +R +L+  +Q
Sbjct:  227 RKKRLDERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQQMQ 306

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S4ABX4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABX4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-5
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1

Query:  580 RRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGA 810
            +R ERNARE++RS +IS++I ELR +L+  GV V K +KSSVL+EA +YI  LQ+ H +SE +R +L+  +Q    GA
Sbjct:  312 KREERNAREKERSFRISKQINELRSLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHHYRSEIDRHQLVQQVQRIGSGA 389

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BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.400e-5
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 1

Query:  574 NRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEA 762
            ++RRL+RNAREQ+RS KI+ +I++LR++L   G  VK++KSSVLSE  DYI  LQ++    EA
Sbjct:  460 DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEA 522

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot

BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
D8LJ51_ECTSI	9.650e-77	48.61	N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT...	[more]
A0A835Z815_9STRA	1.050e-20	27.95	BHLH domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835YRU1_9STRA	1.260e-20	27.45	BHLH domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A7S1XXW7_9STRA	1.370e-7	44.83	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S0GE46_9STRA	3.260e-6	48.19	Hypothetical protein (Fragment) n=1 Tax=Proboscia ...	[more]
A0A7S2S9S4_9STRA	1.190e-5	51.32	Hypothetical protein (Fragment) n=1 Tax=Eucampia a...	[more]
A0A7R9U539_9STRA	1.460e-5	49.32	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S3KX76_9STRA	4.360e-5	47.50	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S4ABX4_9STRA	4.790e-5	50.00	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A7S2CTA7_9STRA	5.400e-5	53.97	Hypothetical protein n=2 Tax=Florenciella parvula ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig55475	contig	H-elongata_contig55475:165..3840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	60.8
Seed ortholog evalue	2.4e-06
Seed eggNOG ortholog	2850.Phatr54435
EggNOG free text desc.	PAS domain
EggNOG OGs	2C415@1,2SP0H@2759,2XFU3@2836
Ec32 ortholog description	bHLH and PAS domain protein
Ec32 ortholog	Ec-02_004780.1
COG Functional cat.	K
Best tax level	Bacillariophyta
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	5
Model size	1783
Cds size	1782
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig55475.12962.1	prot_H-elongata_contig55475.12962.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig55475 165..3840 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930904.0901613-CDS-H-elongata_contig55475:164..464	1622930904.0901613-CDS-H-elongata_contig55475:164..464	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 165..464 +
1691679618.6014335-CDS-H-elongata_contig55475:164..464	1691679618.6014335-CDS-H-elongata_contig55475:164..464	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 165..464 +
1622930904.136271-CDS-H-elongata_contig55475:1098..1412	1622930904.136271-CDS-H-elongata_contig55475:1098..1412	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 1099..1412 +
1691679618.6177883-CDS-H-elongata_contig55475:1098..1412	1691679618.6177883-CDS-H-elongata_contig55475:1098..1412	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 1099..1412 +
1622930904.1516206-CDS-H-elongata_contig55475:1917..2793	1622930904.1516206-CDS-H-elongata_contig55475:1917..2793	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 1918..2793 +
1691679618.6291351-CDS-H-elongata_contig55475:1917..2793	1691679618.6291351-CDS-H-elongata_contig55475:1917..2793	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 1918..2793 +
1622930904.1672928-CDS-H-elongata_contig55475:3241..3500	1622930904.1672928-CDS-H-elongata_contig55475:3241..3500	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 3242..3500 +
1691679618.644637-CDS-H-elongata_contig55475:3241..3500	1691679618.644637-CDS-H-elongata_contig55475:3241..3500	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 3242..3500 +
1622930904.1985614-CDS-H-elongata_contig55475:3807..3840	1622930904.1985614-CDS-H-elongata_contig55475:3807..3840	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 3808..3840 +
1691679618.6667955-CDS-H-elongata_contig55475:3807..3840	1691679618.6667955-CDS-H-elongata_contig55475:3807..3840	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig55475 3808..3840 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig55475:165..3840+
coding sequence from alignment at H-elongata_contig55475:165..3840+

protein sequence of mRNA_H-elongata_contig55475.12962.1

>prot_H-elongata_contig55475.12962.1 ID=prot_H-elongata_contig55475.12962.1|Name=mRNA_H-elongata_contig55475.12962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=594bp
QEAIDFGDTDQDDDVDETPHAGTSGPGPPDREAGRGGSDSCSIPRPSSRA
SRAAMTSAREVVVCKATTQQQQQQQQVATRGQYIPPPKSRMEKVKAEAKE
MLGTEDQEALAAEAAAAKRSSRANRSDAKSRHRAVGGMAGGVGGMTGWTQ
AVSASSSKDRTDGRTDASKTSSTSTTGNGSSGGSTRVVNVQNRRRLERNA
REQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHA
QSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTN
QTGVKSTAPPAAEERTLPFSHLAGAGAGAIANGRSRVQSSSAVDDFGACG
AQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPT
VAVPAAVAAVPLGTPLASVVGAGTTGVLEATSRALSHVNYEKVFRTVPMP
MAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMIS
SILSLRGVADPPFFQVLGKRRDGSSAGVVQISIVQDDALRPLHFCICIME
NTAGTATVGAGGLAAAAPAGTLGVAPIAAGGGFGGGGGGGGGGA

mRNA from alignment at H-elongata_contig55475:165..3840+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig55475.12962.1 ID=mRNA_H-elongata_contig55475.12962.1|Name=mRNA_H-elongata_contig55475.12962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3676bp|location=Sequence derived from alignment at H-elongata_contig55475:165..3840+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGCTATCGATTTTGGAGACACAGACCAAGACGACGATGTGGATGA
GACACCTCATGCAGGGACTTCAGGTCCAGGACCGCCTGATCGAGAGGCGG
GAAGAGGCGGCAGCGACAGCTGCAGCATTCCACGTCCCAGTTCCCGTGCA
TCTCGCGCGGCCATGACGAGCGCCAGGGAAGTAGTCGTGTGTAAGGCAAC
AACGCAACAACAGCAGCAGCAGCAACAGGTGGCCACGAGAGGGCAATATA
TTCCGCCTCCGAAGTCCAGGATGGAGAAGGTCAAGGCTGAGGCAAAAGAG
GTGCGCGGGTTACTGCATGTTCTTTCTGCCCGAAGCGGGGCACACTTGAG
ACAAACCGCCTGTTCGTGTGATGAGTTGAGATGTGCATGACTCACAACGC
AATATGTGCAGCATTACCGGGCCTTTTAAGCTCGGGAGGACGATTCGATA
CATGCCCTCATGCAACAAGATCGTACAGCGTGTAGTGCACTTCCAGGCGA
CATGCCGCAACTGTGTTGTAATTCGTTTCAGAACGCGAAACCGTTTAAAT
TATTTTTCCCGGAAAAACGCGAGGAATATAACTAGGTGGCGGGTGTAATA
TTTCTAGGTGGCGGATCTTGTCACGCACGCTATGGGGGTCCTCGTGAGAC
CCACGTGTGTTCTGTTCCTAACTGTATCCGCATGCATTGGGAGCGACCCC
GCGCAGAGAGACCAGCGCTACGGCGCAGCACCGTAGTCATAATTTCGAAA
TCGCTATGGCCATCCCCCCTCCCATTATCTTTCTTTCTCATTCTAGACAA
ACTAGCTGAGCTGAAAGGATAACCGAAGCATTAAAAAAACCTGCAAGGTA
TAAACTTCGGGATAACACACATCCATTCACCACCTCAGCCCCCCCCCCCG
CGGTACGTTTGTCTGTTCATGCGTGCGTGCATAGATGCTAGGGACCGAAG
ATCAGGAGGCACTCGCGGCAGAGGCGGCCGCCGCAAAAAGAAGCTCTCGC
GCGAACAGAAGCGATGCGAAAAGTAGACACCGTGCGGTCGGCGGAATGGC
GGGGGGCGTAGGGGGCATGACGGGATGGACCCAGGCGGTGTCAGCGTCGT
CGAGCAAGGATCGGACGGACGGACGGACGGACGCTAGTAAGACATCATCA
ACCTCGACTACCGGTAACGGCAGTAGCGGCGGATCGACTAGAGTGGTCAA
TGTTCAGAACAGGAGGCGGCTGGAACGGAACGCACGGGAACAGAAGCGGT
GAGTCACGGCATCCCTGAAGGTCGACGGAAGTAGGAATGCCTCGCCTTGT
GCATGGGACACTTGAGGGCGTTCTTACTGTTCGAGTTCAGTAGATCATGT
GGCTGCTCTCGTTCCATCTGCTGAAAAAAAAAAAAAATATTATCATGTTT
ATTTTTACCATAATCGTGGCACCAAACTGCTGGCTTGGTTAAAGCCCTAT
TCCCGTTCCGTTCGTGCCCCAAGAGAGTGCATACAGTCATTTACACGAAA
ACATCCGGCCCTAATATTAGAAAATAAATAAATAAATAATTCCAACCCTC
CGAATATCCACACCCGCATAATTAGAAACATACAGAAAATATCTGGAATA
TACTTCGTCAGTCTCGTATCGTCACCACCTCGTGCGTTGTATGGGGGTCT
CGGCGTATCCCTCCCCCCCTCCCTTTTTTCCTACTGTGTAAAACACCTCA
CAATCCACACGTCCACGCACATATGCATACTCATGCCCACCGTTTTACAT
CAGATCGCTCAAGATAAGCCAGCGTATCGAAGAGTTACGGCGGATGCTGA
CGAAGTTCGGAGTGGACGTGAAGGCGAGCAAGTCTTCCGTACTGTCCGAA
GCCACCGACTACATCGCGCACCTGCAGCGCCAGCATGCTCAGTCTGAGGC
CGAGCGCGCGAGGCTCTTGACACTTCTGCAGAACGCGAAGCGTGGGGCGG
CGTGCGGGGCGACATCGATCTCGGCAGCCGGTGGCGGTGGCGACGAGGCG
GAAGATTCCGCCGCGTTGACGCCCTTTGCTTCGACCAATCAGACAGGGGT
AAAATCAACCGCCCCACCGGCAGCCGAAGAGCGCACTCTCCCCTTCAGCC
ATCTCGCTGGCGCTGGCGCCGGCGCAATCGCCAACGGCAGATCGAGGGTT
CAGTCGTCAAGCGCAGTAGACGACTTCGGCGCGTGCGGAGCCCAGCCCAC
GCAGAAGTCGTGGGTGATGGAAGACGCCTTGGGAACATCAAAGTCATCGC
TATCCGCGCGGCAGCAGCCTCAGAGCTCGCTGGCTGTGGTTGGGTCAGAG
GTGGTGAAGCCCGGAGGGGGGGTGGCTCTGATGCCAACAGTGGCCGTACC
GGCAGCGGTGGCTGCCGTGCCGCTGGGTACGCCGCTCGCTTCGGTGGTAG
GTGCGGGCACCACTGGGGTCCTAGAGGCCACTTCTCGCGCCTTGTCGCAC
GTGAACTACGAGAAGGTCTTCCGGACGGTGCCCATGCCGATGGCGATCGC
AAACGTGAATGGTAACCTGGTGGACTGCAATGCACGGCTGACGCAGGCCA
CGGGGTTTCGCCGCGAGGAGGCGCTATTCCTGTCCATCTTCGATCTCATC
GCCGATCCGTTTCTTCAGCACACCTTCAGGTGTACGACGTAGTTTATCTG
TTGCTCCCACCTCAGGCGATAGGAGCGGTGCGCGAAGGAACTACGAGTTA
CTGTGCCTTTTAAGGGCTTTGGACCATCACAGCATGATATCTTTTAATTT
CAACTCCATCCGTGGCTTACTGCTGCGTTTCGAAATTTGGTCGGTGGTTT
CTGAGCGCGCGTGGAAACCATCCAGAACGCAGACATAGAGCATCAGGGCA
TATACTGCATCGGTTCGGGCGAGGGGTAGGGCCGACTGAAAAGACAGTTG
GGTGGCATTACAACCAGTGTATACGTTGCGGCATTTGCACCCCCCCCTCT
TTTCCATCCTCCCGAAGAAGTGTGGCCAATATCCTACCAACTACGGAATG
CAAGCGTTAAGTTATCTCTCTCTCTCTCTTTCCCCTTCCTGACGCTTCCC
TCTCGCGTATCGTCTCCCCTCGTGTAGCATGATCAGCTCGATCCTCAGCC
TCCGCGGAGTGGCCGACCCCCCGTTCTTCCAAGTGCTAGGCAAGCGTCGG
GACGGGAGCTCGGCGGGCGTGGTCCAAATTTCGATTGTCCAAGACGACGC
CCTGCGACCTCTCCACTTTTGCATCTGCATTATGGAAAACACGGCGGGTA
CCGCGACCGTGGGAGCGGGGGGCCTCGCGGCGGCGGCGCCCGCGGGCACC
CTGGGTGTCGCTCCCATCGCTGCCGGTGGTGGGTTCGTCACAACAAGAGG
CGTTGGAGACGGCAGAAACATGGTGGGTGTCGGCATTGGCATCGGCGGCG
GAAGCGGAGTCTGCACGGGAGCAGGGGTTAGCGGCGGTGGAGGAAGTGGG
CCGTTGTGAATACAGCGGCGGGCACTAACAGGCCGTGGTAGAGATGGCGA
TTTTGCTAAGTAGAGAGAAATACGACTTTTCCCTCTTGAATGCAAACAGC
GTTGCCGATGCAAGGAGAAGGAAATTTATCTGGCCGGGCCGGGGCGGGGC
GGGGGGGGGGGGGGGGGGGGGGGGGGAGAAAAAAAAAAAGAAGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCGCG

Coding sequence (CDS) from alignment at H-elongata_contig55475:165..3840+

>mRNA_H-elongata_contig55475.12962.1 ID=mRNA_H-elongata_contig55475.12962.1|Name=mRNA_H-elongata_contig55475.12962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3564bp|location=Sequence derived from alignment at H-elongata_contig55475:165..3840+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGCTATCGATTTTGGAGACACAGACCAAGACGACGATGTGGATGA
GACACCTCATGCAGGGACTTCAGGTCCAGGACCGCCTGATCGAGAGGCGG
GAAGAGGCGGCAGCGACAGCTGCAGCATTCCACGTCCCAGTTCCCGTGCA
TCTCGCGCGGCCATGACGAGCGCCAGGGAAGTAGTCGTGTGTAAGGCAAC
AACGCAACAACAGCAGCAGCAGCAACAGGTGGCCACGAGAGGGCAATATA
TTCCGCCTCCGAAGTCCAGGATGGAGAAGGTCAAGGCTGAGGCAAAAGAG
CAGGAAGCTATCGATTTTGGAGACACAGACCAAGACGACGATGTGGATGA
GACACCTCATGCAGGGACTTCAGGTCCAGGACCGCCTGATCGAGAGGCGG
GAAGAGGCGGCAGCGACAGCTGCAGCATTCCACGTCCCAGTTCCCGTGCA
TCTCGCGCGGCCATGACGAGCGCCAGGGAAGTAGTCGTGTGTAAGGCAAC
AACGCAACAACAGCAGCAGCAGCAACAGGTGGCCACGAGAGGGCAATATA
TTCCGCCTCCGAAGTCCAGGATGGAGAAGGTCAAGGCTGAGGCAAAAGAG
ATGCTAGGGACCGAAGATCAGGAGGCACTCGCGGCAGAGGCGGCCGCCGC
AAAAAGAAGCTCTCGCGCGAACAGAAGCGATGCGAAAAGTAGACACCGTG
CGGTCGGCGGAATGGCGGGGGGCGTAGGGGGCATGACGGGATGGACCCAG
GCGGTGTCAGCGTCGTCGAGCAAGGATCGGACGGACGGACGGACGGACGC
TAGTAAGACATCATCAACCTCGACTACCGGTAACGGCAGTAGCGGCGGAT
CGACTAGAGTGGTCAATGTTCAGAACAGGAGGCGGCTGGAACGGAACGCA
CGGGAACAGAAGCGATGCTAGGGACCGAAGATCAGGAGGCACTCGCGGCA
GAGGCGGCCGCCGCAAAAAGAAGCTCTCGCGCGAACAGAAGCGATGCGAA
AAGTAGACACCGTGCGGTCGGCGGAATGGCGGGGGGCGTAGGGGGCATGA
CGGGATGGACCCAGGCGGTGTCAGCGTCGTCGAGCAAGGATCGGACGGAC
GGACGGACGGACGCTAGTAAGACATCATCAACCTCGACTACCGGTAACGG
CAGTAGCGGCGGATCGACTAGAGTGGTCAATGTTCAGAACAGGAGGCGGC
TGGAACGGAACGCACGGGAACAGAAGCGATCGCTCAAGATAAGCCAGCGT
ATCGAAGAGTTACGGCGGATGCTGACGAAGTTCGGAGTGGACGTGAAGGC
GAGCAAGTCTTCCGTACTGTCCGAAGCCACCGACTACATCGCGCACCTGC
AGCGCCAGCATGCTCAGTCTGAGGCCGAGCGCGCGAGGCTCTTGACACTT
CTGCAGAACGCGAAGCGTGGGGCGGCGTGCGGGGCGACATCGATCTCGGC
AGCCGGTGGCGGTGGCGACGAGGCGGAAGATTCCGCCGCGTTGACGCCCT
TTGCTTCGACCAATCAGACAGGGGTAAAATCAACCGCCCCACCGGCAGCC
GAAGAGCGCACTCTCCCCTTCAGCCATCTCGCTGGCGCTGGCGCCGGCGC
AATCGCCAACGGCAGATCGAGGGTTCAGTCGTCAAGCGCAGTAGACGACT
TCGGCGCGTGCGGAGCCCAGCCCACGCAGAAGTCGTGGGTGATGGAAGAC
GCCTTGGGAACATCAAAGTCATCGCTATCCGCGCGGCAGCAGCCTCAGAG
CTCGCTGGCTGTGGTTGGGTCAGAGGTGGTGAAGCCCGGAGGGGGGGTGG
CTCTGATGCCAACAGTGGCCGTACCGGCAGCGGTGGCTGCCGTGCCGCTG
GGTACGCCGCTCGCTTCGGTGGTAGGTGCGGGCACCACTGGGGTCCTAGA
GGCCACTTCTCGCGCCTTGTCGCACGTGAACTACGAGAAGGTCTTCCGGA
CGGTGCCCATGCCGATGGCGATCGCAAACGTGAATGGTAACCTGGTGGAC
TGCAATGCACGGCTGACGCAGGCCACGGGGTTTCGCCGCGAGGAGGCGCT
ATTCCTGTCCATCTTCGATCTCATCGCCGATCCGTTTCTTCAGCACACCT
TCAGATCGCTCAAGATAAGCCAGCGTATCGAAGAGTTACGGCGGATGCTG
ACGAAGTTCGGAGTGGACGTGAAGGCGAGCAAGTCTTCCGTACTGTCCGA
AGCCACCGACTACATCGCGCACCTGCAGCGCCAGCATGCTCAGTCTGAGG
CCGAGCGCGCGAGGCTCTTGACACTTCTGCAGAACGCGAAGCGTGGGGCG
GCGTGCGGGGCGACATCGATCTCGGCAGCCGGTGGCGGTGGCGACGAGGC
GGAAGATTCCGCCGCGTTGACGCCCTTTGCTTCGACCAATCAGACAGGGG
TAAAATCAACCGCCCCACCGGCAGCCGAAGAGCGCACTCTCCCCTTCAGC
CATCTCGCTGGCGCTGGCGCCGGCGCAATCGCCAACGGCAGATCGAGGGT
TCAGTCGTCAAGCGCAGTAGACGACTTCGGCGCGTGCGGAGCCCAGCCCA
CGCAGAAGTCGTGGGTGATGGAAGACGCCTTGGGAACATCAAAGTCATCG
CTATCCGCGCGGCAGCAGCCTCAGAGCTCGCTGGCTGTGGTTGGGTCAGA
GGTGGTGAAGCCCGGAGGGGGGGTGGCTCTGATGCCAACAGTGGCCGTAC
CGGCAGCGGTGGCTGCCGTGCCGCTGGGTACGCCGCTCGCTTCGGTGGTA
GGTGCGGGCACCACTGGGGTCCTAGAGGCCACTTCTCGCGCCTTGTCGCA
CGTGAACTACGAGAAGGTCTTCCGGACGGTGCCCATGCCGATGGCGATCG
CAAACGTGAATGGTAACCTGGTGGACTGCAATGCACGGCTGACGCAGGCC
ACGGGGTTTCGCCGCGAGGAGGCGCTATTCCTGTCCATCTTCGATCTCAT
CGCCGATCCGTTTCTTCAGCACACCTTCAGCATGATCAGCTCGATCCTCA
GCCTCCGCGGAGTGGCCGACCCCCCGTTCTTCCAAGTGCTAGGCAAGCGT
CGGGACGGGAGCTCGGCGGGCGTGGTCCAAATTTCGATTGTCCAAGACGA
CGCCCTGCGACCTCTCCACTTTTGCATCTGCATTATGGAAAACACGGCGG
GTACCGCGACCGTGGGAGCGGGGGGCCTCGCGGCGGCGGCGCCCGCGGGC
ACCCTGGGTGTCGCTCCCATCGCTGCCGGTGGTGGGTTCCATGATCAGCT
CGATCCTCAGCCTCCGCGGAGTGGCCGACCCCCCGTTCTTCCAAGTGCTA
GGCAAGCGTCGGGACGGGAGCTCGGCGGGCGTGGTCCAAATTTCGATTGT
CCAAGACGACGCCCTGCGACCTCTCCACTTTTGCATCTGCATTATGGAAA
ACACGGCGGGTACCGCGACCGTGGGAGCGGGGGGCCTCGCGGCGGCGGCG
CCCGCGGGCACCCTGGGTGTCGCTCCCATCGCTGCCGGTGGTGGGTTCGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGCGCGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGCGCG