mRNA_H-elongata_contig55348.12952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55348.12952.1
Unique NamemRNA_H-elongata_contig55348.12952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.150e-45
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDGEGMQDNTDVCRVID--EFGETIEYPGETEGDVHCHGFAWKDDDDFLTNKLP--LYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            C +NTYMCCWTENDGEGM DNTDVCRV+D    GET+E+PG++EG+VHCHGF W +D    T+K    L  +V NFDH D RGY GN+ GAP CGC+E MPVVS ADCT
Sbjct:  322 CSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPED---ATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCT 427
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 8.460e-44
Identity = 71/109 (65.14%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDGEGMQDNTDVCRVID--EFGETIEYPGETEGDVHCHGFAWKDDDDFLTNKLP--LYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            C +NTYMCCWTENDG+GM DNTDVCRVID    GET EYPGE+EG+VHCHGF W +D    T+K    L  +V +FDH D RGY GN+ GAP CGC+E MP VS ADCT
Sbjct:  336 CNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPED---ATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCT 441
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.230e-42
Identity = 71/109 (65.14%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDGEGMQDNTDVCRVID--EFGETIEYPGETEGDVHCHGFAWKDDDDFLTNKLP--LYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            C +NTYMCCWTENDG+GM DNTDVCRVID    GET EYPGE+EG+VHCHGF W +D    T+K    L  +V +FDH D RGY GN+ GAP CGC+E MP VS ADCT
Sbjct:  293 CNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPED---ATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCT 398
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.570e-39
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDG-EGMQDNTDVCRVID--EFGETIEYPGETEGDVHCHGFAWKDDDDFLTNKLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            CE+NTYMCCWT NDG +GM  NTDVCRV D  E G ++E+P ++EG V+CHGF W D  D  TN LPLYH V+N    +  GY GNV GAPQCGC+E MPVVS ++C+
Sbjct:  112 CEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECS 219
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 6.920e-34
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 CEYNTYMCCWTEND-GEGMQDNTDVCRVIDEFGETIEYPGETEGDVHCHGFAWKDDDDFLTNKLPLYHYVLNFDHADSRG-YSGNVPGAPQCGCVEHMPVVSRADCT 315
            CE++TYMCC+T +D GEG+  NTDVC V     E +E PG++EG V+CHGFAW +  D   + LPLYHYV N    +  G Y GNV GAP+CGC+E MP VS A+C+
Sbjct:   38 CEWDTYMCCYTNHDSGEGVTANTDVCSVP---SEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECS 141
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.310e-30
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDGEGMQDNTDVCRVIDEFGETIEYPGETEGDVHCHGFAWKDD--DDFLTNKLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            C+YNT+MCCW   +G  ++DNTDVC    E     E+PG++EG VHCHGF W ++  DDF+   L L    +N  H D + Y+GN+PGAP C C+E MP VSRADCT
Sbjct:   59 CDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENASDDFI-KYLALDVAFIN--HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCT 157
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.090e-30
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDGEGMQDNTDVCRVIDEFGETIEYPGETEGDVHCHGFAWKDD--DDFLTNKLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            C+YNT+MCCW   +G  ++DNTDVC    E     E+PG++EG VHCHGF W ++  DDF+   L L    +N  H D + Y+GN+PGAP C C+E MP VSRADCT
Sbjct:  123 CDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENASDDFI-KYLALDVAFIN--HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCT 221
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: A0A7S1V5J6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5J6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.260e-24
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:    1 CEYNTYMCCWTENDGEGMQ------------------DNTDVCRVIDEF--------GETIEYPGETEGDVHCHGFAW----KDDDDFLTNKLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            CE +T MCCW+++   G                    DNTD+C V  E         G    YPGE+EGD HCHGFAW    +DD++F+     L+ YV  +DH   RGY+  +PG+P C CVE M  VSRADCT
Sbjct:  227 CELDTVMCCWSKDRQAGDDNGNCAEPYDEKCVDADPADNTDICYVDMERSPDSNNVGGGFAVYPGESEGDTHCHGFAWPATRQDDEEFVFRGNKLF-YVSQYDHLSQRGYAKEIPGSPMCACVEKMATVSRADCT 360
[Close]
BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.870e-23
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   19 MCCWTENDGEG-MQDNTDVCRVIDEFGETIEYPGETEGDVHCHGFAWKD--DDDFLTNKLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            MCCW+   GE  + DNTDV R    +G T E+PGE+EGDVHCHG  W +   D+++   + L   V    H + +GY G++PGAP C C+E MP VSR+DC+
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYR----YGST-EFPGESEGDVHCHGLVWPEGSSDEYI---IYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCS 94
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BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Match: A0A7S2PJA3_9STRA (Hypothetical protein n=3 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PJA3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.060e-22
Identity = 58/138 (42.03%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:    1 CEYNTYMCCWTE----NDGEGM--------------QDNTDVCRV----------IDEFGETIEYPGET---EGDVHCHGFAWKDDD-DFLTN-KLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT 315
            CE  +  CCW +    ND  G                DNTD+C V          +D  G T  +PG+    EG +HCHGFAW +DD D+ T  K     YV  +DH   RGY  N+ GAP CGCVE MP+VSRADCT
Sbjct:  178 CELKSAQCCWPQDRQANDNNGNCAKAYDDNCVDKDPGDNTDLCMVDLSYAPENNFVDASGYTF-FPGDNNNGEGPIHCHGFAWANDDMDYYTRYKANNLFYVSMYDHMYKRGYVRNIAGAPMCGCVEKMPIVSRADCT 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55348.12952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT55_ECTSI3.150e-4565.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI8.460e-4465.14Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI1.230e-4265.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI2.570e-3960.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FT53_ECTSI6.920e-3454.21Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
D7G8D2_ECTSI1.310e-3051.40Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI6.090e-3051.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1V5J6_9STRA2.260e-2441.48Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
D8LHS4_ECTSI6.870e-2347.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2PJA3_9STRA6.060e-2242.03Hypothetical protein n=3 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55348contigH-elongata_contig55348:683..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.6e-35
Seed eggNOG ortholog2880.D7FT55
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55348.12952.1prot_H-elongata_contig55348.12952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55348 701..1291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.7050242-UTR-H-elongata_contig55348:682..7001622930902.7050242-UTR-H-elongata_contig55348:682..700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55348 683..700 +
1691679618.0658143-UTR-H-elongata_contig55348:682..7001691679618.0658143-UTR-H-elongata_contig55348:682..700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55348 683..700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.7210743-CDS-H-elongata_contig55348:700..9301622930902.7210743-CDS-H-elongata_contig55348:700..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55348 701..930 +
1691679618.0773864-CDS-H-elongata_contig55348:700..9301691679618.0773864-CDS-H-elongata_contig55348:700..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55348 701..930 +
1622930902.7357657-CDS-H-elongata_contig55348:1224..12911622930902.7357657-CDS-H-elongata_contig55348:1224..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55348 1225..1291 +
1691679618.0925186-CDS-H-elongata_contig55348:1224..12911691679618.0925186-CDS-H-elongata_contig55348:1224..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55348 1225..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55348.12952.1

>prot_H-elongata_contig55348.12952.1 ID=prot_H-elongata_contig55348.12952.1|Name=mRNA_H-elongata_contig55348.12952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MCCWTENDGEGMQDNTDVCRVIDEFGETIEYPGETEGDVHCHGFAWKDDD
DFLTNKLPLYHYVLNFDHADSRGYSGNVPGAPQCGCVEHMPVVSRADCT
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mRNA from alignment at H-elongata_contig55348:683..1291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55348.12952.1 ID=mRNA_H-elongata_contig55348.12952.1|Name=mRNA_H-elongata_contig55348.12952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig55348:683..1291+ (Himanthalia elongata Himel1 dioecious)
TGTGAGTACAACACATATATGTGCTGCTGGACGGAAAACGACGGCGAGGG
CATGCAGGATAACACGGACGTATGCCGCGTTATCGACGAATTCGGAGAGA
CCATCGAGTATCCAGGAGAGACCGAGGGAGACGTGCACTGCCACGGCTTT
GCCTGGAAAGATGATGACGACTTCCTCACAAACAAGCTTCCGCTCTACCA
CTACGTTCTCAACTTCGACCACGCGGACAGCAGGGGCTACTCTGGAAAGT
AAGTATCAATATTTCTATTATGATAACCGCATTCGATATAAACTATTTGT
AGAGATTTGCTTCCTCGCCACGGTTGATTACTTACTGAGCGTACGCACCC
ACTCATAGCATCGCTGTCGGTGTAGGGGTAGCTCCGAGATGCTTAAGCGC
TACTGTTATGCATGCAAACCACTTCGACCGAGCCATCCGTAGCTTGGGTT
GTCTGGTGAGTTGTCTATGTCAGAGTCTTCGTCCACAAACTTGATCAAAC
TCAAGACTGGCGCGTCTTCGTCTTGCCATTCTTGCTCCACAGCGTTCCGG
GCGCGCCTCAGTGTGGGTGTGTTGAGCATATGCCAGTGGTTAGCCGCGCG
GACTGCACC
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Coding sequence (CDS) from alignment at H-elongata_contig55348:683..1291+

>mRNA_H-elongata_contig55348.12952.1 ID=mRNA_H-elongata_contig55348.12952.1|Name=mRNA_H-elongata_contig55348.12952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig55348:683..1291+ (Himanthalia elongata Himel1 dioecious)
ATGTGCTGCTGGACGGAAAACGACGGCGAGGGCATGCAGGATAACACGGA
CGTATGCCGCGTTATCGACGAATTCGGAGAGACCATCGAGTATCCAGGAG
AGACCGAGGGAGACGTGCACTGCCACGGCTTTGCCTGGAAAGATGATGAC
GACTTCCTCACAAACAAGCTTCCGCTCTACCACTACGTTCTCAACTTCGA
CCACGCGGACAGCAGGGGCTACTCTGGAAAATGTGCTGCTGGACGGAAAA
CGACGGCGAGGGCATGCAGGATAACACGGACGTATGCCGCGTTATCGACG
AATTCGGAGAGACCATCGAGTATCCAGGAGAGACCGAGGGAGACGTGCAC
TGCCACGGCTTTGCCTGGAAAGATGATGACGACTTCCTCACAAACAAGCT
TCCGCTCTACCACTACGTTCTCAACTTCGACCACGCGGACAGCAGGGGCT
ACTCTGGAAACGTTCCGGGCGCGCCTCAGTGTGGGTGTGTTGAGCATATG
CCAGTGGTTAGCCGCGCGGACTGCACCCGTTCCGGGCGCGCCTCAGTGTG
GGTGTGTTGAGCATATGCCAGTGGTTAGCCGCGCGGACTGCACC
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