mRNA_H-elongata_contig55343.12951.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55343.12951.1
Unique NamemRNA_H-elongata_contig55343.12951.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55343.12951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55343contigH-elongata_contig55343:3219..3842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-26_005130.1
Exons1
Model size624
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.6445417-CDS-H-elongata_contig55343:3218..38421622930902.6445417-CDS-H-elongata_contig55343:3218..3842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55343 3219..3842 -
1691679618.0543537-CDS-H-elongata_contig55343:3218..38421691679618.0543537-CDS-H-elongata_contig55343:3218..3842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55343 3219..3842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55343.12951.1prot_H-elongata_contig55343.12951.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55343 3219..3842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55343.12951.1

>prot_H-elongata_contig55343.12951.1 ID=prot_H-elongata_contig55343.12951.1|Name=mRNA_H-elongata_contig55343.12951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
RSCAHDGCSTRPIYDIPGTRKAEFCAQHKGGGMVNLIRKRCVHDGCFTLP
SFGLPGKRKVELCSQHKRAGMVDLRSRSCAHDGCSTQPSYGIPDSRKAVL
CSQHKKTGMVDIRNKSCAHDGCSTRPNYGIPGTRIAEFCAQHKGAGMVDI
KKKLCTQGEFSFRPNYGLPGASAVKLSSQHERAPIKDLKSKSCVENRCSM
QPSNGVPG
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mRNA from alignment at H-elongata_contig55343:3219..3842-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55343.12951.1 ID=mRNA_H-elongata_contig55343.12951.1|Name=mRNA_H-elongata_contig55343.12951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig55343:3219..3842- (Himanthalia elongata Himel1 dioecious)
AGGTCTTGTGCACACGATGGGTGCTCGACTCGGCCCATCTACGATATACC
AGGCACCAGGAAGGCGGAGTTCTGCGCCCAGCACAAAGGGGGTGGAATGG
TCAATCTCATAAGAAAGCGATGCGTGCACGATGGGTGCTTCACTCTGCCT
AGCTTCGGCTTACCAGGCAAGAGAAAGGTGGAGCTATGCTCTCAACACAA
AAGGGCGGGAATGGTAGATCTTAGAAGTAGATCTTGTGCACACGATGGGT
GTTCCACTCAGCCCAGCTATGGTATACCCGATAGCAGGAAGGCAGTGCTA
TGCTCTCAACACAAAAAGACGGGTATGGTAGATATCAGAAATAAGTCATG
TGCACACGATGGGTGCTCGACTCGACCCAACTACGGTATTCCAGGCACGA
GGATAGCGGAGTTCTGCGCACAGCACAAAGGGGCGGGTATGGTAGATATT
AAGAAGAAGCTTTGCACGCAAGGTGAGTTTTCCTTTCGTCCCAACTACGG
CCTACCGGGAGCTAGCGCGGTGAAATTATCCTCCCAGCACGAGAGGGCAC
CAATTAAAGACCTCAAAAGTAAGTCATGCGTGGAAAACAGGTGCTCCATG
CAGCCCAGCAACGGTGTGCCAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig55343:3219..3842-

>mRNA_H-elongata_contig55343.12951.1 ID=mRNA_H-elongata_contig55343.12951.1|Name=mRNA_H-elongata_contig55343.12951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig55343:3219..3842- (Himanthalia elongata Himel1 dioecious)
AGGTCTTGTGCACACGATGGGTGCTCGACTCGGCCCATCTACGATATACC
AGGCACCAGGAAGGCGGAGTTCTGCGCCCAGCACAAAGGGGGTGGAATGG
TCAATCTCATAAGAAAGCGATGCGTGCACGATGGGTGCTTCACTCTGCCT
AGCTTCGGCTTACCAGGCAAGAGAAAGGTGGAGCTATGCTCTCAACACAA
AAGGGCGGGAATGGTAGATCTTAGAAGTAGATCTTGTGCACACGATGGGT
GTTCCACTCAGCCCAGCTATGGTATACCCGATAGCAGGAAGGCAGTGCTA
TGCTCTCAACACAAAAAGACGGGTATGGTAGATATCAGAAATAAGTCATG
TGCACACGATGGGTGCTCGACTCGACCCAACTACGGTATTCCAGGCACGA
GGATAGCGGAGTTCTGCGCACAGCACAAAGGGGCGGGTATGGTAGATATT
AAGAAGAAGCTTTGCACGCAAGGTGAGTTTTCCTTTCGTCCCAACTACGG
CCTACCGGGAGCTAGCGCGGTGAAATTATCCTCCCAGCACGAGAGGGCAC
CAATTAAAGACCTCAAAAGTAAGTCATGCGTGGAAAACAGGTGCTCCATG
CAGCCCAGCAACGGTGTGCCAGGCAGGTCTTGTGCACACGATGGGTGCTC
GACTCGGCCCATCTACGATATACCAGGCACCAGGAAGGCGGAGTTCTGCG
CCCAGCACAAAGGGGGTGGAATGGTCAATCTCATAAGAAAGCGATGCGTG
CACGATGGGTGCTTCACTCTGCCTAGCTTCGGCTTACCAGGCAAGAGAAA
GGTGGAGCTATGCTCTCAACACAAAAGGGCGGGAATGGTAGATCTTAGAA
GTAGATCTTGTGCACACGATGGGTGTTCCACTCAGCCCAGCTATGGTATA
CCCGATAGCAGGAAGGCAGTGCTATGCTCTCAACACAAAAAGACGGGTAT
GGTAGATATCAGAAATAAGTCATGTGCACACGATGGGTGCTCGACTCGAC
CCAACTACGGTATTCCAGGCACGAGGATAGCGGAGTTCTGCGCACAGCAC
AAAGGGGCGGGTATGGTAGATATTAAGAAGAAGCTTTGCACGCAAGGTGA
GTTTTCCTTTCGTCCCAACTACGGCCTACCGGGAGCTAGCGCGGTGAAAT
TATCCTCCCAGCACGAGAGGGCACCAATTAAAGACCTCAAAAGTAAGTCA
TGCGTGGAAAACAGGTGCTCCATGCAGCCCAGCAACGGTGTGCCAGGC
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