mRNA_H-elongata_contig55308.12946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55308.12946.1
Unique NamemRNA_H-elongata_contig55308.12946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 605 bits (1560), Expect = 8.270e-209
Identity = 276/508 (54.33%), Postives = 351/508 (69.09%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTS-SNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAWWVTRSVDSVDRRLFERDAPTGRLYTKFKRDMVDLMEERARNKS 1522
            MF +W+V+VDGGNGKE+YGD YADI+A+NRLH+KAATHG CDHFHDGLGFLVSH++++NTFE+SLQ +NPKLT+PYWDFTIE S S     DP SP+T+TPLL  SWFGT D++D +VKDGRWA +E+P  R+NNPG LE DVYG+LR+PWN N R Y+ RG G++C LNTD+++ WPTC+ HY+L T F +FY WVW+ M  PHAP+H W GG +DCA T+  +  LVG+ +A+    L                            +  SG CGC GYDLTQG DYK VM +M Y+E  + DFD+  +R+VV+T+C GV+++G + QSSSS DP+FWPIHPTMER++QF V+TG I DF W D D  VT   G T +++TS Y D C GH GSDVFPY LLDTD DGF+ +TGI G     N+ TNRE+L AL P++NSL+Y+YD F+W HC ADGFDF+DAW  T       R    +    GRL      D  + M +R +  S
Sbjct:  246 MFTIWDVRVDGGNGKELYGDGYADIYAINRLHHKAATHGTCDHFHDGLGFLVSHSVLTNTFEYSLQAVNPKLTVPYWDFTIETSTSTETVYDPASPYTRTPLLDASWFGTADLDDGMVKDGRWAKSEIPKVRDNNPGGLEPDVYGKLRAPWNTNDRAYLTRGLGQLCQLNTDQLLAWPTCQTHYELTTGFHTFYDWVWDSMKAPHAPLHLWLGGTMDCAGTYEAIGELVGNSIAETLTLL----------------------------LLSSGQCGCHGYDLTQGSDYKIVMESMEYLEDLIGDFDDTTQRKVVETLCTGVVNFGSHTQSSSSYDPLFWPIHPTMERLYQFPVLTGSIDDFFWTDADTNVTFADGTTVSEITSVYSDHCIGHHGSDVFPYYLLDTDTDGFEVKTGIRGQPILGNMLTNREILAALDPRANSLSYVYDKFEWSHCEADGFDFNDAWDDTEPSSRTTRPFSHQQKAHGRLGFSLYSDFNEKMAQRLKKGS 725          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 584 bits (1505), Expect = 1.170e-199
Identity = 264/494 (53.44%), Postives = 345/494 (69.84%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIAS--DPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGIS-GGTSSNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAWWVT--RSVDSVDRRLFERDAPTGRLYT 1468
            MF LWEV+VDGGNGKE+YG++YADI+A+NRLHYKAA+   CDHFHDGLGFL SH++ISNTFEFSLQ +NPKLTLPYWDFTIE++    +    D   P T++PL +P WFGTFD  D +VKDGRWA+TE+P   ENNPG ++ DVYG+LR+PWN+N R+Y+ RG G++C  + ++  PWPTC +HYDL T +  FY WVW+ +  PH PVH W GGVLDC  T+ ++E LVG   A      +  +RK ++ DG + C+G  DV     E+  S  CGCLGY+LT+G+DY+ +  TMS I+  + D+D D KRQVV+ IC   +  G++ Q+SSS+DP FW  HPTMER+W + V+TG+I D++WPD DVT T P G   T+  S Y + C GH GSDVFP+GLLDTD DGF+ +TGIS    + N  TNRE L+A  P+ N+L Y+YD F W HC ADG+DF DAW  +  +S  +  R  FE   P   +Y+
Sbjct:  275 MFALWEVRVDGGNGKELYGEDYADIYAINRLHYKAASQSSCDHFHDGLGFLTSHSMISNTFEFSLQKVNPKLTLPYWDFTIESTDVGGLEGTVDDGGPLTRSPLFRPDWFGTFDPEDNMVKDGRWAFTEIPRVFENNPGLIDTDVYGKLRAPWNVNDRQYLTRGMGELCGADMEKAFPWPTCTSHYDLATGYSDFYSWVWQSLYDPHGPVHIWVGGVLDCEETYERIEGLVGKIAASQLAEQSFIHRKNLYRDGIFKCDGRADVAQSSEEVMLSR-CGCLGYNLTEGNDYERIYHTMSVIDDVIGDYDADTKRQVVEAICTTTLVDGDHLQASSSLDPSFWSTHPTMERLWMYVVLTGQITDWSWPDADVTYTTPDGTVVTESLSEYEESCFGHHGSDVFPFGLLDTDTDGFEIKTGISFNSATGNELTNREALQAFDPRINALPYVYDTFNWEHCAADGYDFGDAWQSSTKKSKSTSARPAFEDGVPRAPMYS 767          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 581 bits (1497), Expect = 3.130e-198
Identity = 264/508 (51.97%), Postives = 342/508 (67.32%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTSSNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAW---WVTRSVDSVDRRLFERDAPTGRLYTKFKRDMVDLMEERARN 1516
            MF LW V+VDGGNGKE+YGD+YADI+A+NRLHYK A+  +CDHFHDGLGFL +H +I+NTFE SLQ +NPKLTLPYWDFTIE+S +           TK+ L Q SWFGT D  D  VKDGRWAYTE+P  + N+PGA+E DVY +LR+PWN+N R Y+ RG GKMC    DE  PWPTCE HYDL T +  FY WVW  +  PH PVH W GGVLDC  TF  +  LVG  +A++    +  +RK +F DG + C G   V     E+  SG CGC GYDLTQGDDY+ +   +  ++  + DFD D+KRQVV  +C   ++ G++ Q+SSS+DP F+  HPTMER+W ++V+TG+I DF WPD+DVT+T P G    +  S Y + C+GH GSDVFP+G+LD+D DGF+ +TG+ G  + N  TNRE+L+A   +SNS++Y+YD FKW HC ADGFDF+DAW      R   S  R  F++ AP   +Y   +        ++A N
Sbjct:  291 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKGASPYECDHFHDGLGFLTNHIVITNTFEASLQTVNPKLTLPYWDFTIESSTAGTKGDGGYQSQTKSELFQESWFGTADPTDGQVKDGRWAYTEIPKMKVNDPGAVEPDVYSKLRAPWNVNDRPYLTRGMGKMCDAKVDEWYPWPTCETHYDLATGYSDFYSWVWYSLYDPHGPVHIWIGGVLDCEKTFGAIAELVGPSIAEDLALYSFIHRKNLFRDGIFSCVGSATVVQAPAEVLSSGQCGCRGYDLTQGDDYESIYYNIVDLDDLIGDFDADVKRQVVAALCTTTMNDGDHLQASSSLDPSFYATHPTMERLWMYAVLTGQITDFTWPDDDVTITKPDGTVEVESLSLYGETCQGHGGSDVFPFGILDSDTDGFEVKTGVKGMENGNTLTNRELLQAFDARSNSVSYVYDTFKWTHCEADGFDFNDAWNGAAQARPTSSSRRPSFKQGAPRAPMYNILEEKRAARAAKKATN 798          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 553 bits (1425), Expect = 8.940e-188
Identity = 253/509 (49.71%), Postives = 337/509 (66.21%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDP-KSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTSS-NIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAWW--VTRSVDSVDRRLFERDAPTGR-LYTKFKRDMVDLMEERAR 1513
            M+ LW V+V GGNGKE+YGD+YADI+A+NRLHYKAA+   CDHFHDGLGF+ +H +I+NTFE+SLQ +NPKLT+PYWDFTI+ S++  I  +   S  T + +  P WFGT+D +D ++KD RWA+T +P    NNPG L  DVY +LR+PWN+N R Y+ RG G MC + T    PWPTCE HYDL T++  FY +VW+ +  PH PVH W GGVLDC  T+  +  LVG + A      +  +RK ++ +G + C+G   V     EI  +G CGCLGYDLTQG DY+++   ++  +  + D D+++KR+V   ICG   + G++ Q+SSS+DP FWP HPTMER+W +S++TG I DF WPD DVTVT P G    +  S Y D C GHRGSDVFP+GLLD+D D F  +TGI G   + N  TNREVL+A   +SNSL Y+YD FKW HC ADG +FDDAW     R   S+  R   ++    R  Y+ +   M + +  RA+
Sbjct:  255 MYTLWTVRVKGGNGKELYGDDYADIYAINRLHYKAASPQDCDHFHDGLGFMTNHAVITNTFEYSLQRVNPKLTVPYWDFTIDGSSAGGIFGESVSSAETYSKVFTPEWFGTYDEDDNMLKDSRWAFTPIPRMEVNNPGELTPDVYLKLRAPWNVNDRAYLTRGMGNMCGIPTSNTYPWPTCETHYDLATSYKDFYSYVWDSLYDPHGPVHIWIGGVLDCEQTYTTIRNLVGEEAAGELAMFSFVHRKNLYREGIFQCSGTAGVGQKPEEILSTGQCGCLGYDLTQGTDYQDIFDRLTMADSIIGDVDDEVKREVTSIICGTPANDGDHLQASSSLDPSFWPTHPTMERLWMYSILTGHITDFTWPDGDVTVTKPDGTVEVESISLYGDTCTGHRGSDVFPFGLLDSDTDDFTIKTGIRGNPDTGNQLTNREVLQAFDARSNSLPYVYDTFKWTHCEADGVNFDDAWENAKARGPSSIKSRPAFKEGEVRRPRYSGYDEIMANALARRAK 763          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 547 bits (1410), Expect = 1.690e-185
Identity = 249/471 (52.87%), Postives = 323/471 (68.58%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIAS----DPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFH-KVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGT--SSNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAW 1393
            M +LW V+V  G+G+E YG+ Y+DIWA+NRLH+KAA+   CDHFHDGLGFL +H ++SNTFE SLQ +NPKLTLPYWDFTIE+S +   A+    D      KTPLLQ SWFGT D   ++V++GRWA   +P  RE NP  +E DVY +LRSPWN+N R+Y++RG G+MCH   +   PWPTCE+HY+L T+F  FY WVWE +  PH PVH W GGV+DC  T+   +E LVG + A +   +A  +RK MF DG + C G V V     E+ ESG+CGC GYDLTQGDDY ++  +M +++  + D DE+ KR++V+ +C   I+ G++ QSSSS+DP FW  HPTMER+W +SV+TG++ DF WPD DVT T   G TY+Q  S Y + C GHRGSDVFP+ +L  + + F  QTGI G      N  TNREVL A  P+ N+L Y+YD F+W HC  DGFD  DAW
Sbjct:  233 MLELWNVRVQDGDGREKYGENYSDIWAINRLHFKAASPQFCDHFHDGLGFLTNHGLVSNTFENSLQQVNPKLTLPYWDFTIESSTAGIAANEHLDDMFGSKIKTPLLQESWFGTADPTTRMVQNGRWANVPIPKMREGNPSKIEPDVYSKLRSPWNVNDRRYISRGMGQMCHARAETFYPWPTCESHYNLATSFTDFYSWVWESLYDPHGPVHIWIGGVMDCEETYGVDIEHLVGEETALDLALMAFVHRKDMFRDGIFSCEGSVAVTESPDEVLESGVCGCHGYDLTQGDDYLQIFESMVFMKELMGDSDENTKRELVRVMCSTPINEGDHLQSSSSLDPSFWSTHPTMERLWMYSVLTGQVTDFEWPDADVTYTASDGTTYSQPISKYSEECLGHRGSDVFPFDILANEVNDFTVQTGIKGSPLGGGNTMTNREVLAAFDPRINALPYVYDTFEWAHCAEDGFDLRDAW 703          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 509 bits (1311), Expect = 8.620e-172
Identity = 241/467 (51.61%), Postives = 311/467 (66.60%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMT--TMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTSS-NIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAW 1393
            M QLW V+V GG G E+YGD+YADI ++NRLH+KAA +  CDHFHDGLGFL SH++++NTFE+SLQ +NPKLT+PYWDFTIE    A IA D       +PL Q SWFGT D  D VVKDGRWA TE+P     +PG L  DVYG LRS W +NS  Y+ RG GK+C  +  +   WP+CE H++LV  +D FY WV E M +PH PVH W GGVL+C  T   + +LVG   A +        RK ++ DG + C G   V     E+  SG CGCLGYDL QGDD+K + T  T+ + +V + D+D++ KRQVV  +C   I  G++  + SS+DP FWP+HPTMER++ FS +TG++ DF+WPD++ + +   G T  + TS+Y D C GH GSDVFP+GLLD DDD FK +TG+ G   + N  TNREVL  L  + N L Y+YDNF+W HC+ DG DF DAW
Sbjct:  216 MHQLWAVRVHGGEGIELYGDDYADISSINRLHFKAAQNKSCDHFHDGLGFLTSHSVLTNTFEYSLQRVNPKLTVPYWDFTIEYH-EAEIAGDDDDITINSPLFQESWFGTADPVDNVVKDGRWARTEIPAMDLGSPGELIPDVYGLLRSRWTVNSSPYLTRGLGKLCDGSVLDTYAWPSCEEHHNLVMDYDDFYSWVSESMYSPHGPVHTWIGGVLNCEDTISSISSLVGEKNANSLSLNTFDQRKNLWRDGFFACEGSAAVGAPADELLLSGKCGCLGYDLNQGDDWKTIYTNSTLDFDDV-IGDYDDETKRQVVAAVCASTIYDGDHLHAGSSLDPTFWPMHPTMERLFMFSSLTGQLTDFHWPDSEFSYSDSDGNTVVETTSTYGDTCHGHGGSDVFPFGLLDDDDDAFKIKTGMQGNEETGNKLTNREVLAVLDARYNMLPYVYDNFRWDHCLQDGIDFYDAW 680          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: D8LB18_ECTSI (ShTK domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB18_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 7.640e-170
Identity = 237/467 (50.75%), Postives = 311/467 (66.60%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMT--TMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTSS-NIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAW 1393
            M QLW V+V GG G E+YGD+YADI +++RLH+KAA +  CDHFHDGLGFL SH++++NTFE+SLQ +NPKLT+PYWDFTIE    A IA D       +PL Q SWFGT D  D VVKDGRWA TE+P     +PG L  DVYG LRS W +NS  Y+ RG GK+C  +  ++  WP+CE H++LV  +D FY WV + M +PHAPVH W GGVL+C  T   + +LVG   A +        RK+++ D  + C G   V     E+  SG CGCLGYDL+QGDD+K + T  T+ + +V + D+D+  KRQVV  +C   I  G++  + SS+DP FWP+HPTMER++ FS +TG++ DF WPD++ + +   G T  + TS Y D C GH GSDVFP+GLL+ DD GFK +TG+ G   + N  TNREVL  L  + N L Y+YD+F+W HC+ DG DF DAW
Sbjct:   45 MHQLWAVRVHGGKGIELYGDDYADISSISRLHFKAAQNKSCDHFHDGLGFLTSHSMLTNTFEYSLQRVNPKLTVPYWDFTIEYH-EAEIAGDDDDITINSPLFQESWFGTADPVDNVVKDGRWARTEIPAMDPGSPGELIPDVYGLLRSRWIVNSSPYLTRGLGKLCDGSVVDMYGWPSCEEHHNLVMDYDDFYSWVSKSMYSPHAPVHTWIGGVLNCEDTISYISSLVGEKNANSLSLNTFDQRKSLWRDDFFACEGSAAVGAPADELLSSGKCGCLGYDLSQGDDWKTIYTNSTLDFDDV-IGDYDDKTKRQVVAAVCASTIYDGDHLHAGSSLDPTFWPMHPTMERLFMFSSLTGQLTDFYWPDSEFSYSDSDGNTVVETTSKYGDTCHGHSGSDVFPFGLLEDDDAGFKIKTGMLGNEETGNKLTNREVLAVLDARYNMLPYVYDDFRWDHCLQDGIDFYDAW 509          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 9.200e-169
Identity = 238/472 (50.42%), Postives = 312/472 (66.10%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMT--TMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISG-GTSSNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAWWVTRS 1408
            M Q+W V+V GGNG E++GD YADI ++NRLH+KAA +  CDHFHDGLGFL SH++++NTFE+SLQ +NPKLT+PYWDFTIE    A IA D       +PL Q SWFGT D  D VVKDGRWA TE+P    ++PG L  DVYG LRS W +NS  Y+ RG GK+C  +  +   WP+CE H++LV  +D FY WV + M +PH PVH W GGVL+C  T   V +LVG   A +        RK ++ DG + C G   V     E+  SG CGCLGYDL+QGDD+K + T  T+ + +V + D+D++ KRQVV  +C   I  G++  + SS+DP FW +HPTMER++ FS +TG++ DF+WPD++ + T   G    + T  Y D C GH GSDVFP+ LLD DDD F+ +TG+ G G + N  TNREVL  L  + N L Y+YDNF+W HC+ DG DF+DAW  + S
Sbjct:  218 MHQIWTVRVSGGNGIELFGDGYADISSINRLHFKAAQNKSCDHFHDGLGFLTSHSMLTNTFEYSLQRVNPKLTVPYWDFTIEYH-EAEIAGDDNEMTINSPLFQESWFGTADPVDNVVKDGRWANTEIPAMDPSSPGELIPDVYGLLRSRWTINSSPYLTRGLGKLCDGSVVDTYGWPSCEEHHNLVMDYDDFYSWVSKSMYSPHGPVHTWIGGVLNCEDTISSVSSLVGEKNANSLSLKTFDQRKNLWRDGFFECEGSAAVGTPADELLSSGKCGCLGYDLSQGDDWKTIYTNSTVDFDDV-IGDYDDETKRQVVAAVCASTIFDGDHLHAGSSLDPTFWAMHPTMERLFMFSSLTGQLTDFHWPDSEFSYTDSDGNIVVETTGIYGDTCHGHGGSDVFPFDLLDGDDDAFQIKTGMPGNGETGNKLTNREVLAVLDARFNMLPYVYDNFRWDHCLKDGIDFEDAWDASTS 687          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 492 bits (1266), Expect = 5.650e-164
Identity = 232/480 (48.33%), Postives = 314/480 (65.42%), Query Frame = 2
Query:    2 MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHL-NTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQG-DDYKEVM--TTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTS-SNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAWWVTRSVDSVDR 1426
            MF LW+V+VD GNGKE+YGD+YADI+A+NRLH+KAA    CDHFHDGLGFL SH++ISNTFE+SLQ +NPKLTLPYWDFTIE+   A  + D       +P+ Q SWFG+ D +D +VKDGRWAYT++P     NPG L  DVYG LRS WN+NS  Y+ RG G +C+  +  ++ PWPTCE HY + T +  FY WVW  M  PH PVH W GGVL+C  T   V  LVG + A +    A   RK  + DG + C G  +      ++  +G+CGCLG+DL+   DD++ +   +T+ +  V + D+D++ KR VV  +C   I  G++ Q+ SS+DP FWP+HPTMER++ F+ +TG   D +WPD D + +        ++ S Y D C GH GSDVFP+ LLD+D DGF+ +TG+ G     N  TNREVL A+ P+ N L+Y+YD FKW HC+  G+DFD A+  + +  + D+
Sbjct:  252 MFTLWDVRVDTGNGKELYGDDYADIYAINRLHFKAAMSETCDHFHDGLGFLTSHSLISNTFEYSLQRVNPKLTLPYWDFTIEDF-EAEKSFDDDDLKIVSPIFQESWFGSADPDDNIVKDGRWAYTKMPAMYPGNPGDLNPDVYGLLRSRWNVNSSPYLTRGMGTLCNTYDVTQIYPWPTCELHYWMATEYSDFYSWVWTSMYAPHGPVHTWIGGVLNCEETMASVSGLVGEENANSLALYAFDQRKNFWRDGFFDCEGTAEAGATEDDVFSAGMCGCLGFDLSSNSDDWQTIYYNSTIDFDNV-ISDYDDETKRMVVAEVCASTIHDGDHLQAGSSLDPTFWPMHPTMERLFMFARLTGNTYDLDWPDADASSS-------NEMISRYGDDCVGHGGSDVFPFNLLDSDHDGFEIKTGMKGNPEIGNSFTNREVLAAMDPRVNQLSYVYDTFKWDHCLGSGYDFDTAFDYSSTASAEDK 722          
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Match: A0A6H5KGP3_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP3_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 7.150e-150
Identity = 212/447 (47.43%), Postives = 279/447 (62.42%), Query Frame = 2
Query:  131 FHDGLGFLVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKTPLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSPWNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEGMGTPHAPVHFWSGGVLDCASTFHKVEALVGS---DLAKNFVFLANAYRKAMFCDGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEVFLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQFSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPYGLLDTDDDGFKTQTGISGGTSSNIPTNREVLEALSPQSNSLTYIYDNFKWPHCIADGFDFDDAWWVTRSVDSVDRRLFERDAPTGRL 1462
            FHDGLGFLVSH++++NTFE+S Q +NPKLT+PYWDFTIE S S     DP SP+T+TPLL  SWFGT DV+D +VKDGR A +E+P  R+NNPG LE DVYG+L++PWN N R Y+ RG G++C LNT++++PWPTC+ HY+L T   +FY WVW  M  P AP+H W GG +DCA T+  +  LVG+     ++++ F       A  C  S        +     ++  SG CGC  Y L QG DYK V+ +M Y+E  + + D+  +R+VV  +C G+++ G + QSSS+ DP+FWP HPTM R++QF V+TG I DF W D D+ VT   G T +++TS Y D C GH GSDVFPY LLDTD DGF+                          +NSL+Y+ D F+W HC ADGFDF+DAW  T       R         GRL
Sbjct:  160 FHDGLGFLVSHSVLTNTFEYSWQAVNPKLTVPYWDFTIETSTSTETVYDPASPYTRTPLLNASWFGTADVDDGMVKDGRRAKSEIPMVRDNNPGGLEPDVYGKLQAPWNTNDRAYLTRGLGQLCQLNTNQLLPWPTCQTHYELTTGSHTFYDWVWNSMHAPDAPLHLWLGGTIDCAGTYEAIAELVGTLSRRRSRSWRFTTAGTCTATTCVASIPRALARMITGRFMQLLSSGQCGCHSYGLAQGSDYKIVIESMEYLEDLIGELDDTTQRKVVGALCTGMVNLGSHSQSSSTYDPLFWPTHPTMGRLYQFPVLTGSIDDFCWTDADINVTFADGTTVSEITSVYSDHCVGHHGSDVFPYFLLDTDTDGFEV-------------------------ANSLSYVSDKFEWSHCEADGFDFNDAWDDTEQSPPAARPFSHHQKAHGRL 581          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55308.12946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC28_ECTSI8.270e-20954.33TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC42_ECTSI1.170e-19953.44TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC46_ECTSI3.130e-19851.97Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A6H5J7R8_9PHAE8.940e-18849.71TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J676_9PHAE1.690e-18552.87TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7G9A4_ECTSI8.620e-17251.61Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LB18_ECTSI7.640e-17050.75ShTK domain containing protein n=1 Tax=Ectocarpus ... [more]
D7FW00_ECTSI9.200e-16950.42Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JRR4_9PHAE5.650e-16448.33TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5KGP3_9PHAE7.150e-15047.43Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55308contigH-elongata_contig55308:591..3831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue1.8e-55
Seed eggNOG ortholog44056.XP_009040493.1
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1525
Cds size1524
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55308.12946.1prot_H-elongata_contig55308.12946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55308 592..3831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.886758-UTR-H-elongata_contig55308:590..5911622930901.886758-UTR-H-elongata_contig55308:590..591Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55308 591..591 +
1691679617.7616754-UTR-H-elongata_contig55308:590..5911691679617.7616754-UTR-H-elongata_contig55308:590..591Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55308 591..591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.9038205-CDS-H-elongata_contig55308:591..7201622930901.9038205-CDS-H-elongata_contig55308:591..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 592..720 +
1691679617.7721467-CDS-H-elongata_contig55308:591..7201691679617.7721467-CDS-H-elongata_contig55308:591..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 592..720 +
1622930901.9181097-CDS-H-elongata_contig55308:919..11411622930901.9181097-CDS-H-elongata_contig55308:919..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 920..1141 +
1691679617.784672-CDS-H-elongata_contig55308:919..11411691679617.784672-CDS-H-elongata_contig55308:919..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 920..1141 +
1622930901.933541-CDS-H-elongata_contig55308:1382..15011622930901.933541-CDS-H-elongata_contig55308:1382..1501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 1383..1501 +
1691679617.802332-CDS-H-elongata_contig55308:1382..15011691679617.802332-CDS-H-elongata_contig55308:1382..1501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 1383..1501 +
1622930901.951321-CDS-H-elongata_contig55308:1828..19981622930901.951321-CDS-H-elongata_contig55308:1828..1998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 1829..1998 +
1691679617.8123255-CDS-H-elongata_contig55308:1828..19981691679617.8123255-CDS-H-elongata_contig55308:1828..1998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 1829..1998 +
1622930901.974526-CDS-H-elongata_contig55308:2353..25171622930901.974526-CDS-H-elongata_contig55308:2353..2517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 2354..2517 +
1691679617.8225067-CDS-H-elongata_contig55308:2353..25171691679617.8225067-CDS-H-elongata_contig55308:2353..2517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 2354..2517 +
1622930901.996885-CDS-H-elongata_contig55308:2799..29821622930901.996885-CDS-H-elongata_contig55308:2799..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 2800..2982 +
1691679617.8329198-CDS-H-elongata_contig55308:2799..29821691679617.8329198-CDS-H-elongata_contig55308:2799..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 2800..2982 +
1622930902.0154681-CDS-H-elongata_contig55308:3294..38311622930902.0154681-CDS-H-elongata_contig55308:3294..3831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 3295..3831 +
1691679617.843112-CDS-H-elongata_contig55308:3294..38311691679617.843112-CDS-H-elongata_contig55308:3294..3831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55308 3295..3831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55308.12946.1

>prot_H-elongata_contig55308.12946.1 ID=prot_H-elongata_contig55308.12946.1|Name=mRNA_H-elongata_contig55308.12946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=508bp
MFQLWEVKVDGGNGKEIYGDEYADIWAMNRLHYKAATHGKCDHFHDGLGF
LVSHTIISNTFEFSLQLINPKLTLPYWDFTIENSASARIASDPKSPHTKT
PLLQPSWFGTFDVNDQVVKDGRWAYTEVPFARENNPGALEADVYGRLRSP
WNMNSRKYMARGGGKMCHLNTDEVIPWPTCENHYDLVTAFDSFYGWVWEG
MGTPHAPVHFWSGGVLDCASTFHKVEALVGSDLAKNFVFLANAYRKAMFC
DGSWGCNGHVDVDMDVFEIAESGICGCLGYDLTQGDDYKEVMTTMSYIEV
FLEDFDEDIKRQVVQTICGGVISYGENGQSSSSMDPMFWPIHPTMERMWQ
FSVVTGKIKDFNWPDNDVTVTLPSGETYTQVTSSYYDFCEGHRGSDVFPY
GLLDTDDDGFKTQTGISGGTSSNIPTNREVLEALSPQSNSLTYIYDNFKW
PHCIADGFDFDDAWWVTRSVDSVDRRLFERDAPTGRLYTKFKRDMVDLME
ERARNKS*
back to top

mRNA from alignment at H-elongata_contig55308:591..3831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55308.12946.1 ID=mRNA_H-elongata_contig55308.12946.1|Name=mRNA_H-elongata_contig55308.12946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3241bp|location=Sequence derived from alignment at H-elongata_contig55308:591..3831+ (Himanthalia elongata Himel1 dioecious)
GATGTTCCAGCTCTGGGAGGTTAAAGTGGACGGTGGTAACGGCAAGGAGA TTTACGGAGACGAATACGCGGACATCTGGGCCATGAATCGTCTTCATTAC AAGGCTGCCACCCACGGGAAATGCGATCACGTGAGTTTGTGAGGCGATCA ACCACAATAGTTTGGGGGTCCTTTGTCGCCTCCTCGCGTTTCTGAGCCCA TTTTGTTTTCCGGCGCCGAACCTCCCACCGTGAGGAATGTCCCCCGTCCT CTTTGTCCTTCATGCTCGATTGAATTACAATGTAATCCCCCGCCCCCTTA ACTCATCGCCCGCCGACAATATGACGCAGTTCCACGATGGCCTCGGATTT CTTGTGAGCCACACAATAATTTCCAACACGTTCGAGTTCAGTCTGCAGCT CATCAACCCCAAGCTCACCCTTCCCTACTGGGACTTCACCATCGAGAACT CTGCCTCCGCGCGGATTGCATCCGACCCAAAGTCTCCCCACACGAAAACG CCGCTACTGCAGCCCTCGTGGTTTGGGACCTTCGACGTCAACGACCAAGT AGTGAGTTGCGCGTGCATGCATCCCATGACGCTTGATATCGACTCCCGAA GCGGAAGTCAAATGAGTTGTGTATGCTGACCCCCTCCATTTCCCTCCAAG TTTTTGCCTTAATGCAAGCATCGATAATTTCTCGCGCTTTCAATTTGGGT GCACTCTGAATGGCGCAGTCCCACCATCGACGCGTGCCTCTGGCCGCCTC CTCGCCCCTCCTCACCTCTCCTTCCCCATCGTCCCGCAAAAGGTCAAGGA CGGTCGATGGGCGTACACGGAAGTTCCTTTCGCGAGAGAGAACAACCCGG GTGCTCTCGAAGCGGATGTGTACGGCAGACTGCGATCCCCGTGGAACATG AACAGCAGGAAGTGAGTTTTGTAATGACGATCTGTGGTCTCAAGTCACTG CCCTTGCACCCACGCATTCGGGAAATTGGCCCAGATATTATGTTTATATC ACGACCTGTCTCCGAAACATTTCCCCCTCGACCCCCCCTCCCCCTGTGTT CAAAACGCCATACAGACAATCTTCAACGCTCGTATTGTGGATTACCCAGG GCTCGCATTTCTTTCAAAAATGATCAGCTCCTCCTCCGCTCCATCTGAAG CCTTAAGTCAAGTCCGTCGCCGGTAGCGTACGAATTCGTTGCCTGAATGA TTGGTGGACCGAACCCGTGACACGATACGTACACGCAGGTACATGGCGCG AGGGGGGGGCAAGATGTGCCACCTTAACACAGACGAGGTCATCCCGTGGC CTACCTGCGAGAACCATTACGATTTAGTCACCGCCTTCGACAGCTTCTAT GGCTGGGTCTGGGAGGGCATGGGCACACCTCACGCCCCCGTCCATTTCTG GAGTGGTGGTGAGTAAAAAAATGTATTTGCTGGTGCAGGCGCAAGCTCCT TCTCCAGCGTACGGCCGTGATGGTTTCAAAATACTGTCGCATTCAGAGTA AGTATGCTGTCGCTGTTGTGTACCGTAATAAAATAAAATAAAAATATATT AAATAAGTTATATTCCTCATCCCGATCTGGTCTGAGGGATAAATATATCG CCAAGACACCCGGCTGTATTAACCGGCTCAAAAAGCTGGATATTTGGCGA TCGCTGCGTGTCTCTCTTAGCGTGGATCACGGAAGCTGGGAAAATTCGTG ACAGCCGCAGAAGAACTAATTCGTGATGCACACCTGAACGCCCTTTCGCG ATGTTGGCGGTAGGCGTTTTGGACTGCGCATCGACTTTCCATAAGGTCGA AGCTCTCGTCGGTAGTGATCTCGCTAAGAACTTCGTCTTCTTAGCGAACG CCTACCGCAAGGCGATGTTCTGCGATGGCTCTTGGGGGTGCAATGGTCAT GTGGACGTGGATATGGATGTATTCGAGGTGAGAGGTTTGCAGAAACGTCC ACATTATTGAAGTAAGCATTTTATTCGCCCGAATCATCCCAGTGGCCCTC TCCTTTCCTGCCGATTTGCATCATAATTTACCACACCGCACCTCCTCCGT TTGCAGCACTGCAGTTCAGTGGGCATGGAGTTACATTGCTTGTGCTAGAT CTTTGATAGCATCCTACGGTAGGATCGTGGTTCGTTTAAAGTAAAAAAAA ACACGAGAAAATACATATTATATATTTGTTAATGAATCGACCGACCGTCG GTAACACAGATTGCCGAAAGCGGCATATGCGGGTGCCTAGGCTACGATCT TACCCAGGGAGACGACTACAAGGAGGTGATGACTACTATGTCATACATTG AGGTTTTCCTTGAGGATTTCGATGAAGATATCAAGCGACAGGTGGTGCAA ACGATCTGCGGTGGCGTCATCAGCTACGGCGAAAATGGACAGGTGGGTGT GAACTCCCTGTTTCTACCGTAGCCTTACCCCTCCGTTGCCTTCTCGGTCA AGTTTCACGCTATTGCACTGTTGTAGCAGACTCTGTGTGAAATCATTTCC GACAGGTACATACAAAGGGTGAACCGTACCGTTTCCTTTGTTCTGGGTTC AAGCGCTTCAGCAACTACAGCAACCTGATGTAAACGCCTCGTCATGCTGC TTCCACAGCTATTCCTGGTTATGATCAAAATAGAGTTATATTGACCTCCC GCCTTTTCCCTTTCTTGGGTGACGCACCGCCGCCGATTTTCACCGAACTC CCAGTCGAGTTCCTCGATGGACCCCATGTTCTGGCCGATCCACCCCACCA TGGAGCGTATGTGGCAGTTCTCGGTGGTCACCGGGAAAATCAAGGACTTC AATTGGCCAGACAATGACGTCACCGTTACCCTCCCTAGCGGTGAAACCTA CACGCAAGTGACCAGCAGCTACTATGATTTCTGCGAGGGACATCGTGGCA GCGACGTGTTTCCTTACGGATTGCTTGACACAGATGATGACGGGTTCAAA ACGCAAACGGGAATATCAGGAGGTACTAGCAGTAACATCCCGACCAACCG CGAGGTACTCGAAGCTTTGAGCCCACAGAGCAACTCTCTAACATATATAT ACGACAACTTCAAGTGGCCGCACTGCATTGCGGATGGTTTCGATTTTGAC GACGCCTGGTGGGTGACCAGGAGTGTTGACTCGGTCGACCGTCGTCTGTT TGAGAGGGATGCCCCCACGGGCCGACTGTACACGAAATTCAAGAGGGACA TGGTGGATCTTATGGAAGAGAGAGCGAGGAACAAATCATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig55308:591..3831+

>mRNA_H-elongata_contig55308.12946.1 ID=mRNA_H-elongata_contig55308.12946.1|Name=mRNA_H-elongata_contig55308.12946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3048bp|location=Sequence derived from alignment at H-elongata_contig55308:591..3831+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCAGCTCTGGGAGGTTAAAGTGGACGGTGGTAACGGCAAGGAGAT
TTACGGAGACGAATACGCGGACATCTGGGCCATGAATCGTCTTCATTACA
AGGCTGCCACCCACGGGAAATGCGATCACATGTTCCAGCTCTGGGAGGTT
AAAGTGGACGGTGGTAACGGCAAGGAGATTTACGGAGACGAATACGCGGA
CATCTGGGCCATGAATCGTCTTCATTACAAGGCTGCCACCCACGGGAAAT
GCGATCACTTCCACGATGGCCTCGGATTTCTTGTGAGCCACACAATAATT
TCCAACACGTTCGAGTTCAGTCTGCAGCTCATCAACCCCAAGCTCACCCT
TCCCTACTGGGACTTCACCATCGAGAACTCTGCCTCCGCGCGGATTGCAT
CCGACCCAAAGTCTCCCCACACGAAAACGCCGCTACTGCAGCCCTCGTGG
TTTGGGACCTTCGACGTCAACGACCAAGTATTCCACGATGGCCTCGGATT
TCTTGTGAGCCACACAATAATTTCCAACACGTTCGAGTTCAGTCTGCAGC
TCATCAACCCCAAGCTCACCCTTCCCTACTGGGACTTCACCATCGAGAAC
TCTGCCTCCGCGCGGATTGCATCCGACCCAAAGTCTCCCCACACGAAAAC
GCCGCTACTGCAGCCCTCGTGGTTTGGGACCTTCGACGTCAACGACCAAG
TAGTCAAGGACGGTCGATGGGCGTACACGGAAGTTCCTTTCGCGAGAGAG
AACAACCCGGGTGCTCTCGAAGCGGATGTGTACGGCAGACTGCGATCCCC
GTGGAACATGAACAGCAGGAAGTCAAGGACGGTCGATGGGCGTACACGGA
AGTTCCTTTCGCGAGAGAGAACAACCCGGGTGCTCTCGAAGCGGATGTGT
ACGGCAGACTGCGATCCCCGTGGAACATGAACAGCAGGAAGTACATGGCG
CGAGGGGGGGGCAAGATGTGCCACCTTAACACAGACGAGGTCATCCCGTG
GCCTACCTGCGAGAACCATTACGATTTAGTCACCGCCTTCGACAGCTTCT
ATGGCTGGGTCTGGGAGGGCATGGGCACACCTCACGCCCCCGTCCATTTC
TGGAGTGGTGGTACATGGCGCGAGGGGGGGGCAAGATGTGCCACCTTAAC
ACAGACGAGGTCATCCCGTGGCCTACCTGCGAGAACCATTACGATTTAGT
CACCGCCTTCGACAGCTTCTATGGCTGGGTCTGGGAGGGCATGGGCACAC
CTCACGCCCCCGTCCATTTCTGGAGTGGTGGCGTTTTGGACTGCGCATCG
ACTTTCCATAAGGTCGAAGCTCTCGTCGGTAGTGATCTCGCTAAGAACTT
CGTCTTCTTAGCGAACGCCTACCGCAAGGCGATGTTCTGCGATGGCTCTT
GGGGGTGCAATGGTCATGTGGACGTGGATATGGATGTATTCGAGGCGTTT
TGGACTGCGCATCGACTTTCCATAAGGTCGAAGCTCTCGTCGGTAGTGAT
CTCGCTAAGAACTTCGTCTTCTTAGCGAACGCCTACCGCAAGGCGATGTT
CTGCGATGGCTCTTGGGGGTGCAATGGTCATGTGGACGTGGATATGGATG
TATTCGAGATTGCCGAAAGCGGCATATGCGGGTGCCTAGGCTACGATCTT
ACCCAGGGAGACGACTACAAGGAGGTGATGACTACTATGTCATACATTGA
GGTTTTCCTTGAGGATTTCGATGAAGATATCAAGCGACAGGTGGTGCAAA
CGATCTGCGGTGGCGTCATCAGCTACGGCGAAAATGGACAGATTGCCGAA
AGCGGCATATGCGGGTGCCTAGGCTACGATCTTACCCAGGGAGACGACTA
CAAGGAGGTGATGACTACTATGTCATACATTGAGGTTTTCCTTGAGGATT
TCGATGAAGATATCAAGCGACAGGTGGTGCAAACGATCTGCGGTGGCGTC
ATCAGCTACGGCGAAAATGGACAGTCGAGTTCCTCGATGGACCCCATGTT
CTGGCCGATCCACCCCACCATGGAGCGTATGTGGCAGTTCTCGGTGGTCA
CCGGGAAAATCAAGGACTTCAATTGGCCAGACAATGACGTCACCGTTACC
CTCCCTAGCGGTGAAACCTACACGCAAGTGACCAGCAGCTACTATGATTT
CTGCGAGGGACATCGTGGCAGCGACGTGTTTCCTTACGGATTGCTTGACA
CAGATGATGACGGGTTCAAAACGCAAACGGGAATATCAGGAGGTACTAGC
AGTAACATCCCGACCAACCGCGAGGTACTCGAAGCTTTGAGCCCACAGAG
CAACTCTCTAACATATATATACGACAACTTCAAGTGGCCGCACTGCATTG
CGGATGGTTTCGATTTTGACGACGCCTGGTGGGTGACCAGGAGTGTTGAC
TCGGTCGACCGTCGTCTGTTTGAGAGGGATGCCCCCACGGGCCGACTGTA
CACGAAATTCAAGAGGGACATGGTGGATCTTATGGAAGAGAGAGCGAGGA
ACAAATCATAATCGAGTTCCTCGATGGACCCCATGTTCTGGCCGATCCAC
CCCACCATGGAGCGTATGTGGCAGTTCTCGGTGGTCACCGGGAAAATCAA
GGACTTCAATTGGCCAGACAATGACGTCACCGTTACCCTCCCTAGCGGTG
AAACCTACACGCAAGTGACCAGCAGCTACTATGATTTCTGCGAGGGACAT
CGTGGCAGCGACGTGTTTCCTTACGGATTGCTTGACACAGATGATGACGG
GTTCAAAACGCAAACGGGAATATCAGGAGGTACTAGCAGTAACATCCCGA
CCAACCGCGAGGTACTCGAAGCTTTGAGCCCACAGAGCAACTCTCTAACA
TATATATACGACAACTTCAAGTGGCCGCACTGCATTGCGGATGGTTTCGA
TTTTGACGACGCCTGGTGGGTGACCAGGAGTGTTGACTCGGTCGACCGTC
GTCTGTTTGAGAGGGATGCCCCCACGGGCCGACTGTACACGAAATTCAAG
AGGGACATGGTGGATCTTATGGAAGAGAGAGCGAGGAACAAATCATAA
back to top