mRNA_H-elongata_contig5528.12941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5528.12941.1
Unique NamemRNA_H-elongata_contig5528.12941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5528.12941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5528contigH-elongata_contig5528:4214..5376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_003890.1
Exons2
Model size523
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.4246035-CDS-H-elongata_contig5528:4215..46791622930901.4246035-CDS-H-elongata_contig5528:4215..4679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 4216..4679 -
1691679617.6092167-CDS-H-elongata_contig5528:4215..46791691679617.6092167-CDS-H-elongata_contig5528:4215..4679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 4216..4679 -
1622930901.4405375-CDS-H-elongata_contig5528:5321..53761622930901.4405375-CDS-H-elongata_contig5528:5321..5376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 5322..5376 -
1691679617.6189299-CDS-H-elongata_contig5528:5321..53761691679617.6189299-CDS-H-elongata_contig5528:5321..5376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 5322..5376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5528.12941.1prot_H-elongata_contig5528.12941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5528 4216..5376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5528.12941.1

>prot_H-elongata_contig5528.12941.1 ID=prot_H-elongata_contig5528.12941.1|Name=mRNA_H-elongata_contig5528.12941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
STEALAAAAAGATARGASGASVIASPENYGLFPQPFSDIRVPVHPYSPLP
SVSTLVGGNRKHVSRRIRCQVGNACVLPTRTPEVDVADLVLDNNDYYAHV
VDGSSTLREAVAVVAVAAAAAAAEKAPRNQEGTFGAGADIDPRALDDGKL
VKTAKTAAVASEAPEAAEGEETS
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mRNA from alignment at H-elongata_contig5528:4214..5376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5528.12941.1 ID=mRNA_H-elongata_contig5528.12941.1|Name=mRNA_H-elongata_contig5528.12941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-elongata_contig5528:4214..5376- (Himanthalia elongata Himel1 dioecious)
TCAACAGAAGCGTTGGCAGCAGCAGCAGCAGGAGCGACGGCGCGTGGTGC
GAGCGGTAAGTGACGACGCGCCAGGTTAACGACTTATTTTTGCAGAGGAA
GGTGTGACCCTAAAGCCCAGAGAATTGTAAGTGTATATACGCTCCAAAAA
TGTTGAGATCGGCACTACGTGTCTGCTCGGTGGTACCGAGGCGAGCGATC
GCGCAGAATCGAGGCGGGGCTACACGACGCGGTTCGGTAAGCTCGGCGCA
CGATTTTGTATGGTACGCTTGAAAACGCTCTTGTACGGTATGAGGATATT
GGATGGTACGGTACAATGCGGCATGATACGGGACGTATTCTGGTGTGTCC
TTCTATGATGACTGACATATATTTTAAAAAGGGGAAATTTGAGACCAGTT
GGAAACGTTAAGAGCTCCGCTCGGTGCCCTTATTCGGAGTGCGATATAGC
TCGCTCCTTATCTACAGAAACCGTGCTTTGGACATTCTAGCTGTAACGTT
TATTAATGCTGCCTCGAGCCCGCCCACAGATAAAATCAGGGTCGACCATG
ATCGTCGATATATCGTTTGTAGTGGCCTACACAACTTTAGTCCCCCCACC
CCCTCCGCCCCTTTCCTTCCCCTTATCCTTATATATATAAATATATTAAT
AACCAAGCCTCGATGCACCAACGCGCGCTGTGCTGTTTACGAGTTAGGTG
CCTCGGTCATCGCGAGCCCGGAGAATTACGGGCTGTTCCCTCAACCCTTC
TCCGACATTCGCGTGCCCGTGCATCCGTATTCCCCCCTCCCGTCCGTATC
GACCTTGGTCGGCGGCAATCGGAAGCACGTAAGCCGAAGAATCCGCTGCC
AAGTCGGAAATGCCTGCGTCCTGCCAACGAGAACCCCGGAGGTGGACGTC
GCCGACCTAGTCCTGGACAACAATGACTACTATGCCCACGTCGTGGACGG
GTCCAGCACCTTGCGTGAGGCGGTCGCCGTTGTAGCTGTTGCGGCGGCGG
CTGCGGCGGCCGAAAAAGCTCCGCGTAATCAAGAAGGGACCTTCGGAGCA
GGTGCCGATATAGACCCAAGAGCATTAGACGATGGTAAACTGGTGAAGAC
TGCGAAGACAGCGGCAGTTGCATCGGAAGCCCCAGAGGCGGCGGAGGGGG
AAGAAACATCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig5528:4214..5376-

>mRNA_H-elongata_contig5528.12941.1 ID=mRNA_H-elongata_contig5528.12941.1|Name=mRNA_H-elongata_contig5528.12941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig5528:4214..5376- (Himanthalia elongata Himel1 dioecious)
TCAACAGAAGCGTTGGCAGCAGCAGCAGCAGGAGCGACGGCGCGTGGTGC
GAGCGTCAACAGAAGCGTTGGCAGCAGCAGCAGCAGGAGCGACGGCGCGT
GGTGCGAGCGGTGCCTCGGTCATCGCGAGCCCGGAGAATTACGGGCTGTT
CCCTCAACCCTTCTCCGACATTCGCGTGCCCGTGCATCCGTATTCCCCCC
TCCCGTCCGTATCGACCTTGGTCGGCGGCAATCGGAAGCACGTAAGCCGA
AGAATCCGCTGCCAAGTCGGAAATGCCTGCGTCCTGCCAACGAGAACCCC
GGAGGTGGACGTCGCCGACCTAGTCCTGGACAACAATGACTACTATGCCC
ACGTCGTGGACGGGTCCAGCACCTTGCGTGAGGCGGTCGCCGTTGTAGCT
GTTGCGGCGGCGGCTGCGGCGGCCGAAAAAGCTCCGCGTAATCAAGAAGG
GACCTTCGGAGCAGGTGCCGATATAGACCCAAGAGCATTAGACGATGGTA
AACTGGTGAAGACTGCGAAGACAGCGGCAGTTGCATCGGAAGCCCCAGAG
GCGGCGGAGGGGGAAGAAACATCGGTGCCTCGGTCATCGCGAGCCCGGAG
AATTACGGGCTGTTCCCTCAACCCTTCTCCGACATTCGCGTGCCCGTGCA
TCCGTATTCCCCCCTCCCGTCCGTATCGACCTTGGTCGGCGGCAATCGGA
AGCACGTAAGCCGAAGAATCCGCTGCCAAGTCGGAAATGCCTGCGTCCTG
CCAACGAGAACCCCGGAGGTGGACGTCGCCGACCTAGTCCTGGACAACAA
TGACTACTATGCCCACGTCGTGGACGGGTCCAGCACCTTGCGTGAGGCGG
TCGCCGTTGTAGCTGTTGCGGCGGCGGCTGCGGCGGCCGAAAAAGCTCCG
CGTAATCAAGAAGGGACCTTCGGAGCAGGTGCCGATATAGACCCAAGAGC
ATTAGACGATGGTAAACTGGTGAAGACTGCGAAGACAGCGGCAGTTGCAT
CGGAAGCCCCAGAGGCGGCGGAGGGGGAAGAAACATCG
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