mRNA_H-elongata_contig116453.1294.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116453.1294.1
Unique NamemRNA_H-elongata_contig116453.1294.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: D7FU84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU84_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 6.660e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNSQR 156
            VLHEIS ILDTGLD KTLS+L+ELIESGVNPEALAAVVKELRREAA L+ QR
Sbjct:   13 VLHEISTILDTGLDRKTLSLLLELIESGVNPEALAAVVKELRREAATLSRQR 64
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: C1FII7_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FII7_MICCC)

HSP 1 Score: 64.7 bits (156), Expect = 1.320e-12
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    7 HEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNS 150
            HEIS +LD GLD ++L+IL+ L E+GVNPEALAAVVKELRREAAAL +
Sbjct:   19 HEISKLLDCGLDKESLAILIALCENGVNPEALAAVVKELRREAAALQA 66
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A2V0NS68_9CHLO (Mitotic-spindle organizing protein-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NS68_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.290e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 LHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNS 150
            LH+IS ILDTGLD +TL ILV L E+GVNPEALA VVKELRREAA L +
Sbjct:   15 LHQISNILDTGLDKETLRILVGLCEAGVNPEALAHVVKELRREAALLRA 63
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A4P9Z527_9FUNG (Mitotic-spindle organizing protein 1 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z527_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-12
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNS 150
            VLHEIS +L+TGLD + L + V++ E GVNPEALAAVVKELRREAAA+ +
Sbjct:    1 VLHEISTLLNTGLDREQLGLCVKMCERGVNPEALAAVVKELRREAAAIKA 50
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A5J4Y9H1_9CHLO (Negative elongation factor B n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9H1_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNSQ 153
            ++H+IS ILDTGLD +TLS+L+ L ESGVNPEALAA V+ELRREAA L S+
Sbjct:   15 IIHQISQILDTGLDKETLSVLIALCESGVNPEALAAAVRELRREAARLKSE 65
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A8J9ZL61_BRALA (MZT1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZL61_BRALA)

HSP 1 Score: 63.5 bits (153), Expect = 4.390e-12
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 LHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNS 150
            L EIS +L+TGLD +TLSI V LIE GVNPEALA+V+KELRRE AAL +
Sbjct:   16 LQEISRLLNTGLDSETLSICVRLIEQGVNPEALASVIKELRRETAALKA 64
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A7S1GSS1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSS1_HEMAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.830e-12
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAAL 144
            VL E++ +L+TGLD ++LSI +ELIE+GVNPEALAAVVKELRREAAAL
Sbjct:   55 VLFEMANLLNTGLDKQSLSICIELIENGVNPEALAAVVKELRREAAAL 102
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A0L0H5X0_SPIPD (Mitotic-spindle organizing protein 1 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5X0_SPIPD)

HSP 1 Score: 63.2 bits (152), Expect = 5.240e-12
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNSQ 153
            +LHEIS IL+T LD +TLS+ V L ESGVNPEALAAV+KEL+RE+ AL  +
Sbjct:   14 ILHEISRILNTSLDRETLSLCVSLCESGVNPEALAAVIKELKRESRALRGE 64
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BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A397UZH9_9GLOM (Mitotic-spindle organizing protein 1 n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UZH9_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 6.590e-12
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAA 138
            +LHEIS IL+TGLD  TLS+ + L E+GVNPEALAAV+KELRRE+A
Sbjct:   15 ILHEISTILNTGLDRDTLSLCLSLCENGVNPEALAAVIKELRRESA 60
[Close]
BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Match: A0A0M0JFJ5_9EUKA (Mitotic-spindle organizing protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFJ5_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 7.150e-12
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNS 150
            VL++IS +L TGLD +TL++LV L ESGVNPEALAAV+KELRRE AAL +
Sbjct:   13 VLYDISQLLQTGLDRETLAVLVGLTESGVNPEALAAVIKELRRETAALRA 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116453.1294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU84_ECTSI6.660e-1986.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
C1FII7_MICCC1.320e-1272.92Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
A0A2V0NS68_9CHLO2.290e-1275.51Mitotic-spindle organizing protein-like n=1 Tax=Ra... [more]
A0A4P9Z527_9FUNG3.500e-1268.00Mitotic-spindle organizing protein 1 (Fragment) n=... [more]
A0A5J4Y9H1_9CHLO3.510e-1270.59Negative elongation factor B n=1 Tax=Trebouxia sp.... [more]
A0A8J9ZL61_BRALA4.390e-1271.43MZT1 protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
A0A7S1GSS1_HEMAN4.830e-1275.00Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A0L0H5X0_SPIPD5.240e-1266.67Mitotic-spindle organizing protein 1 n=2 Tax=Spize... [more]
A0A397UZH9_9GLOM6.590e-1271.74Mitotic-spindle organizing protein 1 n=1 Tax=Gigas... [more]
A0A0M0JFJ5_9EUKA7.150e-1270.00Mitotic-spindle organizing protein 1 n=1 Tax=Chrys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116453contigH-elongata_contig116453:714..872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FU84
Preferred nameMZT1
KEGG koko:K18633
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000923,GO:0000928,GO:0000930,GO:0000931,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008104,GO:0008150,GO:0008274,GO:0008275,GO:0009524,GO:0009574,GO:0009987,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031021,GO:0031055,GO:0031090,GO:0031109,GO:0031497,GO:0031503,GO:0031965,GO:0031967,GO:0031968,GO:0031975,GO:0032153,GO:0032155,GO:0032991,GO:0033036,GO:0033566,GO:0034080,GO:0034508,GO:0034613,GO:0034622,GO:0034629,GO:0034724,GO:0034728,GO:0042175,GO:0042393,GO:0043015,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043486,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0046785,GO:0048285,GO:0051179,GO:0051225,GO:0051258,GO:0051276,GO:0051415,GO:0051417,GO:0051418,GO:0051641,GO:0061495,GO:0061497,GO:0061641,GO:0065003,GO:0065004,GO:0070727,GO:0070925,GO:0071103,GO:0071824,GO:0071840,GO:0072686,GO:0090307,GO:0097435,GO:0098588,GO:0098687,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.organizing protein
EggNOG OGs2CYW9@1,2S6UI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.7866786-CDS-H-elongata_contig116453:713..8721622929676.7866786-CDS-H-elongata_contig116453:713..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116453 714..872 -
1691679115.7345424-CDS-H-elongata_contig116453:713..8721691679115.7345424-CDS-H-elongata_contig116453:713..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116453 714..872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116453.1294.1prot_H-elongata_contig116453.1294.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116453 714..872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116453.1294.1

>prot_H-elongata_contig116453.1294.1 ID=prot_H-elongata_contig116453.1294.1|Name=mRNA_H-elongata_contig116453.1294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VLHEISIILDTGLDIKTLSILVELIESGVNPEALAAVVKELRREAAALNS
QR*
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mRNA from alignment at H-elongata_contig116453:714..872-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116453.1294.1 ID=mRNA_H-elongata_contig116453.1294.1|Name=mRNA_H-elongata_contig116453.1294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig116453:714..872- (Himanthalia elongata Himel1 dioecious)
GTTTTGCACGAGATCTCCATCATCCTCGACACGGGGTTGGACATCAAGAC
GCTCTCCATCCTGGTGGAATTGATTGAAAGCGGAGTAAATCCAGAAGCTT
TGGCTGCGGTCGTTAAGGAACTGAGAAGAGAGGCGGCGGCCCTGAACTCA
CAACGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig116453:714..872-

>mRNA_H-elongata_contig116453.1294.1 ID=mRNA_H-elongata_contig116453.1294.1|Name=mRNA_H-elongata_contig116453.1294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig116453:714..872- (Himanthalia elongata Himel1 dioecious)
GTTTTGCACGAGATCTCCATCATCCTCGACACGGGGTTGGACATCAAGAC
GCTCTCCATCCTGGTGGAATTGATTGAAAGCGGAGTAAATCCAGAAGCTT
TGGCTGCGGTCGTTAAGGAACTGAGAAGAGAGGCGGCGGCCCTGAACTCA
CAACGATGAGTTTTGCACGAGATCTCCATCATCCTCGACACGGGGTTGGA
CATCAAGACGCTCTCCATCCTGGTGGAATTGATTGAAAGCGGAGTAAATC
CAGAAGCTTTGGCTGCGGTCGTTAAGGAACTGAGAAGAGAGGCGGCGGCC
CTGAACTCACAACGATGA
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