prot_H-elongata_contig55262.12937.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55262.12937.1
Unique Nameprot_H-elongata_contig55262.12937.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length154
Homology
BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 3.000e-61
Identity = 112/157 (71.34%), Postives = 126/157 (80.25%), Query Frame = 0
Query:    6 GWDRYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGREVRLEGLG----------VCVHVKRAPGSGRRGVAIERDQEVRVVIKKVDPALKQVVAIELLD 152
            G  RYGTGPLRRY+DILAQRQIAA+L G+GYL K+ L+ETA+YLTWR NKTR  R +EA RLSLE+LAAHC AQ +ATGL HAV+PARGTGRGREVRLEGLG          VCVH KRAPGSG RGVAI + Q VRVVI+KV+P LKQVVA E +D
Sbjct:  715 GRSRYGTGPLRRYIDILAQRQIAAILRGSGYLNKKDLMETANYLTWRQNKTRASRDEEASRLSLEALAAHCLAQTRATGLEHAVVPARGTGRGREVRLEGLGGVGRGXXXXGVCVHAKRAPGSGGRGVAIRKGQAVRVVIQKVEPQLKQVVATEFVD 871          
BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.430e-19
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 0
Query:    9 RYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGREVRLEGLGVCV 110
            R+GT PLRRYVD+LAQRQ+ AVL     L K  + +  + LT   N     R  E  +L  E+L  HC    +ATGLP+A +PARGTGRG EV ++GLGV +
Sbjct:  595 RFGTAPLRRYVDLLAQRQLCAVLGRRALLGKRRVADAVAALTQVSNARLAARAAEDAKLKWEALEEHCARSRQATGLPYAAVPARGTGRGNEVVVDGLGVSI 696          
BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A4D9CV05_9STRA (RNB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV05_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-17
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 0
Query:    5 GGWD--RYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGREVRLEGLGVCVHVKRAPGS----------GRRGVAIERDQEVRVVIKKVDPA 141
            GG D  R+GTGPLRRY D+LAQ+Q+ +VL G   L+K  ++   + + W+   ++  R    G++ LES A +C A+ KA G  +AV+ A  TG G EV L   G+  +V R PG            RR   +E   E  V + +VDPA
Sbjct:  672 GGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYV-RLPGGWKKKGKDGAGSRRLFDLEAGMEFEVHVLRVDPA 819          
BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A6U7IBS1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A6U7IBS1_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 1.100e-6
Identity = 50/167 (29.94%), Postives = 72/167 (43.11%), Query Frame = 0
Query:    9 RYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVM----------PARGTGRGR------------EVRLEGLGV-CVHVKRAPGSGRRGVAIERDQEVRVVIKKVDPALKQVVAIELLD 152
            R  T PLRRY D++AQRQ+ AVL G+  +      E A+   W   K  D   Q+     L +L +HC  Q   +G   AV+          P   T RG             E+RL   GV  V   R     RR   +++   ++V ++ VD    + V +EL+D
Sbjct:  680 RIATAPLRRYADLIAQRQLCAVLCGSPGMPAS---EVAAIERWIRAKQSDMATQQPQPQMLRALESHCARQATVSGSDFAVLEGTVVKTGVAPEARTSRGNAPTKQPPSRVEVEIRLHAGGVSAVATARTASQARRATRLQQGDVLQVRLRSVDTRRGR-VEVELID 842          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE3.000e-6171.34RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z4W4_9STRA7.430e-1949.02RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CV05_9STRA2.100e-1738.26RNB domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6U7IBS1_9EUKA1.100e-629.94Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 12..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55262contigH-elongata_contig55262:1640..3300 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55262.12937.1mRNA_H-elongata_contig55262.12937.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55262 1640..3300 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55262.12937.1 ID=prot_H-elongata_contig55262.12937.1|Name=mRNA_H-elongata_contig55262.12937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MLGGGGWDRYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLT
WRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGRE
VRLEGLGVCVHVKRAPGSGRRGVAIERDQEVRVVIKKVDPALKQVVAIEL
LDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold