mRNA_H-elongata_contig55262.12937.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55262.12937.1
Unique NamemRNA_H-elongata_contig55262.12937.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 3.000e-61
Identity = 112/157 (71.34%), Postives = 126/157 (80.25%), Query Frame = 1 
Query:   16 GWDRYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGREVRLEGLG----------VCVHVKRAPGSGRRGVAIERDQEVRVVIKKVDPALKQVVAIELLD 456
            G  RYGTGPLRRY+DILAQRQIAA+L G+GYL K+ L+ETA+YLTWR NKTR  R +EA RLSLE+LAAHC AQ +ATGL HAV+PARGTGRGREVRLEGLG          VCVH KRAPGSG RGVAI + Q VRVVI+KV+P LKQVVA E +D
Sbjct:  715 GRSRYGTGPLRRYIDILAQRQIAAILRGSGYLNKKDLMETANYLTWRQNKTRASRDEEASRLSLEALAAHCLAQTRATGLEHAVVPARGTGRGREVRLEGLGGVGRGXXXXGVCVHAKRAPGSGGRGVAIRKGQAVRVVIQKVEPQLKQVVATEFVD 871
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BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.430e-19
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   25 RYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGREVRLEGLGVCV 330
            R+GT PLRRYVD+LAQRQ+ AVL     L K  + +  + LT   N     R  E  +L  E+L  HC    +ATGLP+A +PARGTGRG EV ++GLGV +
Sbjct:  595 RFGTAPLRRYVDLLAQRQLCAVLGRRALLGKRRVADAVAALTQVSNARLAARAAEDAKLKWEALEEHCARSRQATGLPYAAVPARGTGRGNEVVVDGLGVSI 696
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BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A4D9CV05_9STRA (RNB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV05_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-17
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 1 
Query:   13 GGWD--RYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGREVRLEGLGVCVHVKRAPGS----------GRRGVAIERDQEVRVVIKKVDPA 423
            GG D  R+GTGPLRRY D+LAQ+Q+ +VL G   L+K  ++   + + W+   ++  R    G++ LES A +C A+ KA G  +AV+ A  TG G EV L   G+  +V R PG            RR   +E   E  V + +VDPA
Sbjct:  672 GGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYV-RLPGGWKKKGKDGAGSRRLFDLEAGMEFEVHVLRVDPA 819
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BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Match: A0A6U7IBS1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A6U7IBS1_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 1.100e-6
Identity = 50/167 (29.94%), Postives = 72/167 (43.11%), Query Frame = 1 
Query:   25 RYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLTWRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVM----------PARGTGRGR------------EVRLEGLGV-CVHVKRAPGSGRRGVAIERDQEVRVVIKKVDPALKQVVAIELLD 456
            R  T PLRRY D++AQRQ+ AVL G+  +      E A+   W   K  D   Q+     L +L +HC  Q   +G   AV+          P   T RG             E+RL   GV  V   R     RR   +++   ++V ++ VD    + V +EL+D
Sbjct:  680 RIATAPLRRYADLIAQRQLCAVLCGSPGMPAS---EVAAIERWIRAKQSDMATQQPQPQMLRALESHCARQATVSGSDFAVLEGTVVKTGVAPEARTSRGNAPTKQPPSRVEVEIRLHAGGVSAVATARTASQARRATRLQQGDVLQVRLRSVDTRRGR-VEVELID 842
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55262.12937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE3.000e-6171.34RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z4W4_9STRA7.430e-1949.02RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CV05_9STRA2.100e-1738.26RNB domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6U7IBS1_9EUKA1.100e-629.94Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55262contigH-elongata_contig55262:1640..3300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.5e-53
Seed eggNOG ortholog2880.D8LHL6
EggNOG free text desc.RNB domain
EggNOG OGs2DZTA@1,2S7A3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionweakly similar to cyanobacterial Exoribonuclease II
Ec32 orthologEc-26_003590.1
Exons2
Model size462
Cds size462
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.055132-CDS-H-elongata_contig55262:1639..17741622930901.055132-CDS-H-elongata_contig55262:1639..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55262 1640..1774 +
1691679617.5210614-CDS-H-elongata_contig55262:1639..17741691679617.5210614-CDS-H-elongata_contig55262:1639..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55262 1640..1774 +
1622930901.1177723-CDS-H-elongata_contig55262:2973..33001622930901.1177723-CDS-H-elongata_contig55262:2973..3300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55262 2974..3300 +
1691679617.534222-CDS-H-elongata_contig55262:2973..33001691679617.534222-CDS-H-elongata_contig55262:2973..3300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55262 2974..3300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55262.12937.1prot_H-elongata_contig55262.12937.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55262 1640..3300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55262.12937.1

>prot_H-elongata_contig55262.12937.1 ID=prot_H-elongata_contig55262.12937.1|Name=mRNA_H-elongata_contig55262.12937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MLGGGGWDRYGTGPLRRYVDILAQRQIAAVLTGTGYLAKEYLLETASYLT
WRHNKTRDRRQQEAGRLSLESLAAHCRAQVKATGLPHAVMPARGTGRGRE
VRLEGLGVCVHVKRAPGSGRRGVAIERDQEVRVVIKKVDPALKQVVAIEL
LDE*
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mRNA from alignment at H-elongata_contig55262:1640..3300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55262.12937.1 ID=mRNA_H-elongata_contig55262.12937.1|Name=mRNA_H-elongata_contig55262.12937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1661bp|location=Sequence derived from alignment at H-elongata_contig55262:1640..3300+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGGGGTGGGGGGTGGGACAGATACGGCACAGGCCCCTTGCGGCG
TTACGTGGACATCTTAGCCCAGCGGCAGATCGCGGCAGTCCTAACGGGCA
CTGGCTACCTCGCCAAGGAGTATCTCCTCGAGACGGTGAGCGTGGGCTCT
GGCTCTGCATACCATGAACTGATGTAGCCTTGAGGATTACGTTGTTATTC
CTAGTTGAAAAGGCGGTAGAGTGTGGTGGAGTTCTGCACCAAAGACGGCG
TAGATGGAAGGCGAACTGCTCAGGCACCATTCTTCGCTTGGCGGGGGTGG
GATAGATCGACCGATCAATCCTGATGAACACCATCCTGAAATTTTGCCAA
AATAAGGGAAAGGACCGTGGGCGGGGTGCGTGTACTAATGTTAAACGCAT
GTCGTGTATCGTAGCGGACATATGAAAATACCACACATTGCAACATTGCC
GCGACGGAGCGATACGCCATGCCAGACTGTGTTTAACCAAAGATGATACG
AAGTAGGTACAAATTTTTAGTCACTATCCTTGCGTTTGCCACGCAAAACC
GGACATGCCGTGGGTTAATTGGATACTGGACACTGGGCGTGACTTAACTG
TACTATAATATGCTGCAATATAGTATACTATACTAGTACAGAAAGGGACT
TCGATCTCCGCGCGAGTTCATAAGCACCGCACGCACACCGCATTTACAAC
AGAATACCTTCTATGTTATGCACACAGACTCTATCTGCTCATGAATACCC
CTTGGCGGAGTACCCTCATATGGTTTTGATTGCTCTAGGACCTTTCCAAC
AGTCCATTGTTCAGCAGGCATCCTATAGTCCAATAGAATGTAACACGTTT
CACGCCTTCGGGGAGCGAGAGATAAAGGCAAGACTCGTCGGCCGAGGTTT
CTGAGCTCACGGGACACTCTACACACGCTGCATAAACTACCCCGCCGGGA
TGTGTGTGTGTGGGGGGGGAGATACATTTGTAGTGGGGTTTCCTTTTGCG
TTATCCGTTGAGGAAGGCAATAGTTCCGCCGGTTCGATGGAACAGTCCCG
TTGCCCTCGGGATACTGTAGGTGGAAACGCGAAGGTCGATCGCTATATCC
CGCCAGGCGTCGCAGCGTTCCAAGGCCATCCCGGTTCGCCGCGCATCCCA
GCAGGGAAATCAGATCAAGCAGTGGTTGCTTAGAGGTACCTTGATGATAT
TCTCTGCCAAACCTCGACCAACCAAAACCCGACTTTTTTTCTTGTCTTTC
CGACGCCCTTCTTCCCCAATCGGTCGCTTATTTTTTCATTCCCTTTCATC
CATCAAATATAATATGCATGTCGTGCTTTTGAAGGCGAGCTACCTCACCT
GGAGACACAACAAGACCCGCGATCGACGACAACAAGAGGCCGGTCGTCTA
TCCCTCGAGAGCCTCGCGGCCCACTGTCGCGCGCAGGTCAAGGCCACGGG
GCTTCCGCACGCCGTGATGCCGGCCCGCGGCACTGGCCGCGGGAGGGAGG
TTCGCCTCGAGGGTCTTGGGGTCTGCGTGCACGTCAAGCGCGCGCCGGGG
TCGGGCCGACGCGGCGTCGCCATCGAGAGGGATCAAGAGGTCAGGGTGGT
GATCAAGAAGGTGGACCCCGCGCTGAAGCAGGTCGTCGCGATCGAACTCT
TGGACGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig55262:1640..3300+

>mRNA_H-elongata_contig55262.12937.1 ID=mRNA_H-elongata_contig55262.12937.1|Name=mRNA_H-elongata_contig55262.12937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig55262:1640..3300+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGGGGTGGGGGGTGGGACAGATACGGCACAGGCCCCTTGCGGCG
TTACGTGGACATCTTAGCCCAGCGGCAGATCGCGGCAGTCCTAACGGGCA
CTGGCTACCTCGCCAAGGAGTATCTCCTCGAGACGATGCTGGGGGGTGGG
GGGTGGGACAGATACGGCACAGGCCCCTTGCGGCGTTACGTGGACATCTT
AGCCCAGCGGCAGATCGCGGCAGTCCTAACGGGCACTGGCTACCTCGCCA
AGGAGTATCTCCTCGAGACGGCGAGCTACCTCACCTGGAGACACAACAAG
ACCCGCGATCGACGACAACAAGAGGCCGGTCGTCTATCCCTCGAGAGCCT
CGCGGCCCACTGTCGCGCGCAGGTCAAGGCCACGGGGCTTCCGCACGCCG
TGATGCCGGCCCGCGGCACTGGCCGCGGGAGGGAGGTTCGCCTCGAGGGT
CTTGGGGTCTGCGTGCACGTCAAGCGCGCGCCGGGGTCGGGCCGACGCGG
CGTCGCCATCGAGAGGGATCAAGAGGTCAGGGTGGTGATCAAGAAGGTGG
ACCCCGCGCTGAAGCAGGTCGTCGCGATCGAACTCTTGGACGAGTAGGCG
AGCTACCTCACCTGGAGACACAACAAGACCCGCGATCGACGACAACAAGA
GGCCGGTCGTCTATCCCTCGAGAGCCTCGCGGCCCACTGTCGCGCGCAGG
TCAAGGCCACGGGGCTTCCGCACGCCGTGATGCCGGCCCGCGGCACTGGC
CGCGGGAGGGAGGTTCGCCTCGAGGGTCTTGGGGTCTGCGTGCACGTCAA
GCGCGCGCCGGGGTCGGGCCGACGCGGCGTCGCCATCGAGAGGGATCAAG
AGGTCAGGGTGGTGATCAAGAAGGTGGACCCCGCGCTGAAGCAGGTCGTC
GCGATCGAACTCTTGGACGAGTAG
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