prot_H-elongata_contig5525.12936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5525.12936.1
Unique Nameprot_H-elongata_contig5525.12936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length110
Homology
[Close]
BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.370e-26
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:   19 QADMDATLELCHPGNEPSAGRWKDNVDAVRSGVRSIQAMTTSLLSGTYVAPLARERLHQQASLSSLGRASSVRPVGGHGKSPTGQDLVLEL 109
            + D++A LELCH GNEPSAG W+D+V+ +R+GVRSI+ +  SLL+ TYVAP ARERLH++ SLSS G   S R  G  G+  T Q+ VLEL
Sbjct:   52 KTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFG--GSTRAGGALGQPSTDQEFVLEL 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK7_ECTSI1.370e-2657.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5525contigH-elongata_contig5525:801..2065 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5525.12936.1mRNA_H-elongata_contig5525.12936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5525 417..3309 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5525.12936.1 ID=prot_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MPGTARSPAPGYALSVLRQADMDATLELCHPGNEPSAGRWKDNVDAVRSG
VRSIQAMTTSLLSGTYVAPLARERLHQQASLSSLGRASSVRPVGGHGKSP
TGQDLVLEL*
back to top