mRNA_H-elongata_contig5525.12936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5525.12936.1
Unique NamemRNA_H-elongata_contig5525.12936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.750e-22
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:  439 QADMDATLELCHPGNEPSAGRWKDNVDAVRSGVRSIQAMTTSLLSGTYVAPLARERLHQQASLSSLGRASSVRPVGGHGKSPTGQDLVLEL 711
            + D++A LELCH GNEPSAG W+D+V+ +R+GVRSI+ +  SLL+ TYVAP ARERLH++ SLSS G   S R  G  G+  T Q+ VLEL
Sbjct:   52 KTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFG--GSTRAGGALGQPSTDQEFVLEL 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK7_ECTSI1.750e-2257.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5525contigH-elongata_contig5525:417..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003660.1
Exons3
Model size1958
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5525.12936.1prot_H-elongata_contig5525.12936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5525 801..2065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.9192257-UTR-H-elongata_contig5525:416..8001622930900.9192257-UTR-H-elongata_contig5525:416..800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5525 417..800 +
1691679617.4663005-UTR-H-elongata_contig5525:416..8001691679617.4663005-UTR-H-elongata_contig5525:416..800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5525 417..800 +
1622930901.004857-UTR-H-elongata_contig5525:2065..33091622930901.004857-UTR-H-elongata_contig5525:2065..3309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5525 2066..3309 +
1691679617.5068326-UTR-H-elongata_contig5525:2065..33091691679617.5068326-UTR-H-elongata_contig5525:2065..3309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5525 2066..3309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.9466798-CDS-H-elongata_contig5525:800..9511622930900.9466798-CDS-H-elongata_contig5525:800..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5525 801..951 +
1691679617.4746864-CDS-H-elongata_contig5525:800..9511691679617.4746864-CDS-H-elongata_contig5525:800..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5525 801..951 +
1622930900.968448-CDS-H-elongata_contig5525:1530..15981622930900.968448-CDS-H-elongata_contig5525:1530..1598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5525 1531..1598 +
1691679617.4831386-CDS-H-elongata_contig5525:1530..15981691679617.4831386-CDS-H-elongata_contig5525:1530..1598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5525 1531..1598 +
1622930900.9884262-CDS-H-elongata_contig5525:1954..20651622930900.9884262-CDS-H-elongata_contig5525:1954..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5525 1955..2065 +
1691679617.4914467-CDS-H-elongata_contig5525:1954..20651691679617.4914467-CDS-H-elongata_contig5525:1954..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5525 1955..2065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5525.12936.1

>prot_H-elongata_contig5525.12936.1 ID=prot_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MPGTARSPAPGYALSVLRQADMDATLELCHPGNEPSAGRWKDNVDAVRSG
VRSIQAMTTSLLSGTYVAPLARERLHQQASLSSLGRASSVRPVGGHGKSP
TGQDLVLEL*
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mRNA from alignment at H-elongata_contig5525:417..3309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5525.12936.1 ID=mRNA_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2893bp|location=Sequence derived from alignment at H-elongata_contig5525:417..3309+ (Himanthalia elongata Himel1 dioecious)
CAACATCAACTGCAACTCTAACGATTACCCATCCCGCCTTTAGTCTTTTG
GAATCTATCTTTTTCTCTCATATATATATATAATACAATATATACATATT
TCCATCTCTCGGCGAAAAAATAGACTGTCCTGTTTTCAAGTCTGGTACGT
GTTCACGCCTCTGCGCCTTATCCACTTCCCCCCCCCACGAGCGCATGAAA
AGAACCTCATACCCCCGCCTCCGCTCGTCGCATGAAACGGACGCTCGAAA
CCGAATGTTTTGTGCAACAAACTCTCGCCCTCTGCGACGACCTTGATCGT
CTCTCAATATTTAGAGTACAGTAGAGTGGTAGATTATGTTAACCTTTAGC
CTGGATTTTCCATCGGCGGATTGGCAATGGGGTTATGCCGGGCACTGCCC
GTTCACCCGCCCCGGGGTACGCGTTGTCCGTTTTGCGTCAGGCCGATATG
GATGCCACCCTGGAGCTCTGTCATCCCGGGAACGAACCCTCGGCGGGACG
TTGGAAGGACAACGTTGACGCTGTCCGTTCGGGCGGTAAGCACCCAAGAG
TCGATCGCAGCCTTCAGCAGCCGCAGCGTCACCTGACGCTTTTCGAAAGC
ACCACACGGTCATGCGTAGAACTCGACGGTCGTAACGCAGGAGGCATGAG
TGCTGCCCACCTACCTACACACAGCAGTTGCAAGAATTATTTTTCCTGAT
ACTGTTGGCACAAAAGCAGCGAGCCCGGGTGAAATCGTTCACACCTAGGG
AGCGATTACCGACCCGTTGAACGCCTATGTACCGAAAACGTTCTCGTACA
ACGATTGTACCATCTAATCTTTTCCGATCCTTGACGCATTGCTCTTGCTC
TTGCGCTTGGTGATCACCGAACGTTACACCATAAAAATATTGAGGCAGGG
AACCTCTGCAGCGGCAGCAGGAGCTCTTACCTTAAAGCTACAAGCCGAGC
CCGATGCTTAGATCGATGGTTCAAAATTACATCCGCGTTGTCGATTCGGT
CGTTGGAGGCCCTGTCGAAGCCCTTATCGACGGCTAGCGAGGCAATTCAC
GGAGTACCCGCCGTTTGCGATATGCTCTACGTGTGTCTCTGCGTGTCCTT
GTTGCGTCCGACAGTGCGATCGATTCAGGCGATGACGACGAGCCTACTGA
GCGGCACGTACGTGGCACCCTTGGCACGAGAGGTGAGGCTAACGAGCCCA
GACTGCTTTCAGCACAGAATCAATCCAAGCTTGTTCGACCCATACCTCCT
ATGTCGGAAGTACTGTGCCATGTTACGCGTTTGTGGATATCCATGGGACA
ATGAGATCACCCGACAGTTGAAGTCGGCTTCCGGTCCGGCCAGAGGTTTG
CCGATAATGAGATCCCCGCTCCACCCGCGCGCGCGCCGTCAAATCAGACT
CCTTTGTTGCCCGTCCCTTTTTGACCCTGTCCGCCTCACACCAGCCCCCT
CTTTCCCTACGGTCACTCCCTCCCACCGACTCTTTTGTCGTTCTGCTCGT
CTGCTCTTCGCCACGCCTTCACCGGTTCCGAACGAAAGCGCCTCCATCAA
CAAGCTTCCCTGTCCTCCCTTGGACGCGCTTCAAGCGTGCGCCCTGTCGG
GGGGCACGGGAAATCACCAACGGGCCAGGACCTTGTTTTGGAACTTTGAG
CGATTCCGATTGCCGTGGAAGCAATGCCCCGGTCGCGACAGCGCCACCTC
TCTCTCTCTCAGTGTGCGGGAAGCACAGGAGACTCCCTCGCGTATCTACT
TGATGCGTGCATGATCGTGGAGTTCTTCTTTATAGGTGCGGGGGACATAT
TGGCGTTGTGACCCTCTCGAAGACCCAGTCCCCTTAGAATTTTCCTCATG
GCGCTGTCATCGCGCACTAAGCGTGAGTACTGCGGACCGAAGAGAGCGGC
GGAGTCTTCTCGGTGCTTGCGGCAAACAAAATGTAATTAGAGAGGGTCGT
GACCCATACTTTTCGAGCACCATTGCTTGTTTAATTGGGCTCGGGATAGA
AAATACAAAGTACAAGTAGGCTCTAGTTCTCGCCTCTACGGCGTTGGGCA
GTTGATTCTCGTGTGTCGGACGACCAAGTTGGAGGAGATTTTTTCAAACG
TTGGCGTTCGAAGGGTTTCTTAACAGTGTGCGGAGGCGTTTGTTGTCCCC
GTAAAGCTTTTGTAGCAAGAGCTACGCTCTGGCACGATAAAATTCAATCC
CATATAACCTTTTCTGATAGTGTTCCTTCGTTGAAGATTTTTTTTTGTCG
TCTGAGGAGGGCACGTTTCAAGGATGTATACTCCTATGAATACTAAGCAC
GCCAACTGAAGTGCGATCGTTCTTAGTTTCAAAACGCCCTCCGGGATATA
CTCCTTGGAGGCAGAAGGGTCTGTGCGCGAACGCCCACTGTCATAGTAAC
ATATTGAGCGCAGCAAGACATCAATATGTACTCACGACTTTGTTCGAGCA
ACGTTGCTCCCAGAAAGCCTGTATCGCCATAGCCAGGAAGGGAGAGGGCG
GCCTAGTTATATTCCGCAGGAAGTGGCTAGCGCACGCGTTATGACATCTA
TATATCTTTCTATCTATATATTACGAGTATTTCTCCCTTGTGTCGTATGA
CCTAGAGCGGTTTGTGTGGCGTTATTTCCAAACCTCGTGTGACTCGTAGC
GGATAAGACATCACTACTATTCCCTGTGGGAAATGTTACCGTTACCCCCT
TTTACCAGCCGTCGGTGCATCTCTCACCCCAGCCCCTCACCCCTTGCCAT
CTTCGGTGCTTCCTCAGCGAGGTAGTGCTCGACGGGGGTCTGCTCGCCGG
AATAGTTCAGATCATTGCTGATGTTGCTGTTGCTGTTGTTGCTCCATGAA
CAGCATGCCGCCAGAACATGTTCATAATATTGCTTATTTACCC
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Coding sequence (CDS) from alignment at H-elongata_contig5525:417..3309+

>mRNA_H-elongata_contig5525.12936.1 ID=mRNA_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig5525:417..3309+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGGCACTGCCCGTTCACCCGCCCCGGGGTACGCGTTGTCCGTTTT
GCGTCAGGCCGATATGGATGCCACCCTGGAGCTCTGTCATCCCGGGAACG
AACCCTCGGCGGGACGTTGGAAGGACAACGTTGACGCTGTCCGTTCGGGC
GATGCCGGGCACTGCCCGTTCACCCGCCCCGGGGTACGCGTTGTCCGTTT
TGCGTCAGGCCGATATGGATGCCACCCTGGAGCTCTGTCATCCCGGGAAC
GAACCCTCGGCGGGACGTTGGAAGGACAACGTTGACGCTGTCCGTTCGGG
CGTGCGATCGATTCAGGCGATGACGACGAGCCTACTGAGCGGCACGTACG
TGGCACCCTTGGCACGAGAGTGCGATCGATTCAGGCGATGACGACGAGCC
TACTGAGCGGCACGTACGTGGCACCCTTGGCACGAGAGCGCCTCCATCAA
CAAGCTTCCCTGTCCTCCCTTGGACGCGCTTCAAGCGTGCGCCCTGTCGG
GGGGCACGGGAAATCACCAACGGGCCAGGACCTTGTTTTGGAACTTTGAC
GCCTCCATCAACAAGCTTCCCTGTCCTCCCTTGGACGCGCTTCAAGCGTG
CGCCCTGTCGGGGGGCACGGGAAATCACCAACGGGCCAGGACCTTGTTTT
GGAACTTTGA
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