mRNA_H-elongata_contig55223.12930.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI) HSP 1 Score: 175 bits (444), Expect = 6.540e-52 Identity = 88/163 (53.99%), Postives = 117/163 (71.78%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSIDVGFNRRFLDDGHQPVRFNPMDASSLEMAHELADAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M+TTLR PLELFVS QQFMH+ ET+TL + A+V +SM+ R+++ + D+ F RRFLD ++P S E + A++HL+TF++VGVVEQY GF+EVLK +LDP+ H +LW AV +K+NGSPV SGDVL IDPDLV+EFN+T LG QW+V
Sbjct: 81 MVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMRSRLKWA-DPTDLAFIRRFLD-SKTANSYDPQVMYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTLGRQWQV 241
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE) HSP 1 Score: 170 bits (431), Expect = 9.910e-49 Identity = 87/163 (53.37%), Postives = 114/163 (69.94%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSIDVGFNRRFLDDGHQPVRFNPMDASSLEMAHELADAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M+TTLR PLELFVS QQFMH+ ET+TL + A+V +SMK R+ + + D+ F RRFLD ++P S E + A++HL+TF++VGVVEQY GF+EVLK +LDP+ H +LW AV + +NGSPV SGDVL IDPDLV+EFN+T L QW+V
Sbjct: 191 MVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMKSRLGWA-DPTDLAFIRRFLD-SETANSYDPQVLYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATALARQWQV 351
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI) HSP 1 Score: 153 bits (387), Expect = 1.590e-42 Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSIDVGFNRRFLDDGHQPVR-FNPMDASSLEMAHELADAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
+IT LR+PLELFVS +QF HR+ET +L AA +V+ +M+ R+ + S D+GF RRFL G ++P + E + +A A EHL F++VGVVEQY+GF+ VL+ +LDPE++H LW A ++ NNGSPV S DVL +IDPDLV+EFN+T L QW+V
Sbjct: 153 LITMLRDPLELFVSAKQFKHREETASLEAAADFVASNMRGRLGWEDPS-DIGFVRRFL--GTDAANSYDPQLVYTKEQSSAMASTAAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNAT-LSFQWQV 312
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI) HSP 1 Score: 150 bits (380), Expect = 2.820e-42 Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSI-DVGFNRRFLDDGHQPVRFNPMDASSLEMAHELADAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M+TTLR PLELFVS QF HRDETRTLA AT +V+ M+ + G+ + +GF R FL+D V +NP + +A ++EHL+TF +VGVVEQY GF+EVLK +LDP +++ +W K++NN SPV S DVL+ IDP LV+ +N T L LQWKV
Sbjct: 77 MVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTIL--GLEGLGQLGFIRVFLNDTGA-VGYNPRGVYTHNETWAMAAESVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRLDLQWKV 237
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE) HSP 1 Score: 147 bits (372), Expect = 5.540e-40 Identity = 81/164 (49.39%), Postives = 109/164 (66.46%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSI-DVGFNRRFLDDGHQPVRFNPMDASSLEMAHELADAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M+TTLR PLELFVS QF HRDETRTLA AT +V+ M+ + G+ + +GF R FL+D V +NP + +A ++EHL+TF +VGVVEQY GF+EVLK +LDP +++ +W ++NN SPV S DVL+ +DP LV+ +N T L LQWKV
Sbjct: 186 MVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTIL--GLEGLGQLGFIRVFLNDTGA-VGYNPRGVYTHNETWAMATESVEHLNTFLVVGVVEQYEGFIEVLKHTLDPGLENPSVWTTGANVQNNKSPVPSRDVLRNMDPYLVRLYNETRLDLQWKV 346
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.980e-30 Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSIDVGFNRRFLDDGHQPVR-----FNPMDASSLEMAHELADAA----IEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M+T LR PLE++VS QQ+ H+ +T+TL A A+VS++M+ +R + +G G P + F + + ++ E + A IE+L TF+LVG+VEQY+GF+EVL+L LDPE KH ++W + N SP+RS DVL +DP LV+EFN + L LQW+V
Sbjct: 125 MVTALRNPLEVYVSAQQYTHKRKTKTLEKAQAFVSKAMRKTLRQYGDGPALG-EEEMPFGGKSPQQIGGFVFRLVGINKKQLYGEKLEVAVTKAIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGS-LALQWRV 294
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.540e-26 Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSIDVGFNRRFLDDGHQPVRF-NPMDASSLEMAHELADAAIE---HLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKI-KNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQW 483
++TTLR PLELFVSG+Q+++R T TL+ A V R+M R+ L+ QP + + + S+ E+ +A +E +L TF+LVGVVEQY GF+ VL+ LDP+ H +LW ++ K N SPV+S +VL +DP LVK+FNST L QW
Sbjct: 167 LVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAM----------------RKSLETPTQPPGYLHRLVGRSVVTNAEIREATVEGARNLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNST-LSYQW 315
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.940e-25 Identity = 77/187 (41.18%), Postives = 103/187 (55.08%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTL-----AAATAWVSRSMKDRIRY-GVNSIDVGFNRRFLDDGHQPVR-------------FNPMDASSLEMAHELA-----DAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M+T+LR PLE FVSG+QF+H D T TL A A A+VS +M + + G + + R L GH +R F + + + H LA D A+++L F++VGVVEQY+G VLK LDP++KH LW K +N SPV S VL IDP LV++FN + L LQWKV
Sbjct: 238 MVTSLRNPLEAFVSGRQFLHPDMTETLEQASAAHAQAFVSYAMLNALGIDGPGHVAMLGERASL--GHALLRGRRQSPDQLGGFIFRLVGQENAKKLHGLALSRAADEAMKNLEAFWVVGVVEQYAGLQAVLKRLLDPDLKHPALWDKYSYRHSNRSPVDSRYVLAAIDPSLVRQFNDS-LALQWKV 421
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI) HSP 1 Score: 106 bits (265), Expect = 6.790e-24 Identity = 73/177 (41.24%), Postives = 100/177 (56.50%), Query Frame = 1
Query: 1 MITTLREPLELFVSGQQFMHRDETRTLAAATAWVS----RSMKD-RIRYGV-------NSIDVGFNRRFLDDGHQPVRFNPMDASSL--EMAHELADAAIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
M TTLR PLELFVSGQQ+++R +R A A + V R++K ++R V N+ VGF R +D PV+ N + + A A ++L TF+LVGV+EQY GFM VL+ +DP +++W + K N SP +G VL IDP LV+EFN T L QW+V
Sbjct: 141 MFTTLRNPLELFVSGQQYLNRKASRHFAHAVSLVEDTILRAIKQHQLRGDVMVPEGMGNTKSVGFIYRLVD----PVQANSTQEGLVGGKTLSAGAQEAKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNET-LSHQWEV 312
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Match: A0A6H5JIX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX6_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 4.730e-17 Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 253 AIEHLHTFFLVGVVEQYSGFMEVLKLSLDPEVKHKELWGKAVKIKNNGSPVRSGDVLQQIDPDLVKEFNSTVLGLQWKV 489
A+++L F++VGVVEQY+G +EV + SLDPE KH LW K ++ N SPV S +VL IDP+LV+ FN + L LQW V
Sbjct: 61 ALKNLERFWIVGVVEQYTGLLEVWRRSLDPENKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRYFNGS-LALQWDV 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55223.12930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55223.12930.1 >prot_H-elongata_contig55223.12930.1 ID=prot_H-elongata_contig55223.12930.1|Name=mRNA_H-elongata_contig55223.12930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp MITTLREPLELFVSGQQFMHRDETRTLAAATAWVSRSMKDRIRYGVNSIDback to top mRNA from alignment at H-elongata_contig55223:1709..3758+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55223.12930.1 ID=mRNA_H-elongata_contig55223.12930.1|Name=mRNA_H-elongata_contig55223.12930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2050bp|location=Sequence derived from alignment at H-elongata_contig55223:1709..3758+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55223:1709..3758+ >mRNA_H-elongata_contig55223.12930.1 ID=mRNA_H-elongata_contig55223.12930.1|Name=mRNA_H-elongata_contig55223.12930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig55223:1709..3758+ (Himanthalia elongata Himel1 dioecious)back to top |