prot_H-elongata_contig5519.12927.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5519.12927.1
Unique Nameprot_H-elongata_contig5519.12927.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length258
Homology
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BLAST of mRNA_H-elongata_contig5519.12927.1 vs. uniprot
Match: D8LTF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF5_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.100e-30
Identity = 95/224 (42.41%), Postives = 124/224 (55.36%), Query Frame = 0 
Query:   39 WLVEVMSQWFKLPLPTLSTAPTAKVARCASSAADDVRVAIQELHNANAKLRAEVLALHSYIEERGFTPEGRESQGDPFARLAVSLPQPQPPCPSNG---PSTGTTSKRLPPKLPREARLAALALLWAAAVSAGGIFVPIAIGEGAARTLRWLDDGETLEPELLRRYFAVDGGRRRLQQLYRRRWSLSLVPVRSNGEIVPQRDDNLRP----TGGELAGAWNELH 255
            WL ++M+ WF LPL   +T+P+    R   S  DD+R  I +L  +NA LR EVLAL + + +RGF P       D FA  A +      P   NG   P++     + P KL REARLAAL +LW AAV+ GG+FVPIAIG GAAR+LRWLD+G TL P+   R          L + +RR  +LS VPV +     P RD         TG  LA AW+E++
Sbjct:   80 WLADIMASWFNLPL--RNTSPSGGTKR--RSTRDDIRADILKLRVSNADLREEVLALRNSMVQRGFFPVD-----DVFA-TATATATGGTPASGNGQQPPTSEGGDPKPPAKLQREARLAALVVLWGAAVALGGVFVPIAIGVGAARSLRWLDNGGTLVPKRWSRP---------LGRGWRRARALSFVPVLAR----PPRDGGGGGEGLVTGEALADAWDEMY 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5519.12927.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTF5_ECTSI1.100e-3042.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..153
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 177..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 154..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5519contigH-elongata_contig5519:8529..10313 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5519.12927.1mRNA_H-elongata_contig5519.12927.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5519 8520..10627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5519.12927.1 ID=prot_H-elongata_contig5519.12927.1|Name=mRNA_H-elongata_contig5519.12927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
MVMATLEGVTAFGLNYPFPTPPSSARENPKGTASKPQDWLVEVMSQWFKL
PLPTLSTAPTAKVARCASSAADDVRVAIQELHNANAKLRAEVLALHSYIE
ERGFTPEGRESQGDPFARLAVSLPQPQPPCPSNGPSTGTTSKRLPPKLPR
EARLAALALLWAAAVSAGGIFVPIAIGEGAARTLRWLDDGETLEPELLRR
YFAVDGGRRRLQQLYRRRWSLSLVPVRSNGEIVPQRDDNLRPTGGELAGA
WNELHVQ*
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