mRNA_H-elongata_contig5519.12927.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5519.12927.1
Unique NamemRNA_H-elongata_contig5519.12927.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5519.12927.1 vs. uniprot
Match: D8LTF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF5_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.760e-29
Identity = 95/224 (42.41%), Postives = 124/224 (55.36%), Query Frame = 1 
Query:  124 WLVEVMSQWFKLPLPTLSTAPTAKVARCASSAADDVRVAIQELHNANAKLRAEVLALHSYIEERGFTPEGRESQGDPFARLAVSLPQPQPPCPSNG---PSTGTTSKRLPPKLPREARLAALALLWAAAVSAGGIFVPIAIGEGAARTLRWLDDGETLEPELLRRYFAVDGGRRRLQQLYRRRWSLSLVPVRSNGEIVPQRDDNLRP----TGGELAGAWNELH 774
            WL ++M+ WF LPL   +T+P+    R   S  DD+R  I +L  +NA LR EVLAL + + +RGF P       D FA  A +      P   NG   P++     + P KL REARLAAL +LW AAV+ GG+FVPIAIG GAAR+LRWLD+G TL P+   R          L + +RR  +LS VPV +     P RD         TG  LA AW+E++
Sbjct:   80 WLADIMASWFNLPL--RNTSPSGGTKR--RSTRDDIRADILKLRVSNADLREEVLALRNSMVQRGFFPVD-----DVFA-TATATATGGTPASGNGQQPPTSEGGDPKPPAKLQREARLAALVVLWGAAVALGGVFVPIAIGVGAARSLRWLDNGGTLVPKRWSRP---------LGRGWRRARALSFVPVLAR----PPRDGGGGGEGLVTGEALADAWDEMY 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5519.12927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTF5_ECTSI2.760e-2942.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5519contigH-elongata_contig5519:8520..10627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1097
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5519.12927.1prot_H-elongata_contig5519.12927.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5519 8529..10313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.785083-UTR-H-elongata_contig5519:8519..85281622930899.785083-UTR-H-elongata_contig5519:8519..8528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5519 8520..8528 +
1691679617.0209043-UTR-H-elongata_contig5519:8519..85281691679617.0209043-UTR-H-elongata_contig5519:8519..8528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5519 8520..8528 +
1622930899.8667617-UTR-H-elongata_contig5519:10313..106271622930899.8667617-UTR-H-elongata_contig5519:10313..10627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5519 10314..10627 +
1691679617.0631483-UTR-H-elongata_contig5519:10313..106271691679617.0631483-UTR-H-elongata_contig5519:10313..10627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5519 10314..10627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.8229032-CDS-H-elongata_contig5519:8528..86391622930899.8229032-CDS-H-elongata_contig5519:8528..8639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5519 8529..8639 +
1691679617.0315325-CDS-H-elongata_contig5519:8528..86391691679617.0315325-CDS-H-elongata_contig5519:8528..8639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5519 8529..8639 +
1622930899.8399522-CDS-H-elongata_contig5519:9390..95191622930899.8399522-CDS-H-elongata_contig5519:9390..9519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5519 9391..9519 +
1691679617.0418077-CDS-H-elongata_contig5519:9390..95191691679617.0418077-CDS-H-elongata_contig5519:9390..9519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5519 9391..9519 +
1622930899.8549657-CDS-H-elongata_contig5519:9779..103131622930899.8549657-CDS-H-elongata_contig5519:9779..10313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5519 9780..10313 +
1691679617.0540874-CDS-H-elongata_contig5519:9779..103131691679617.0540874-CDS-H-elongata_contig5519:9779..10313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5519 9780..10313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5519.12927.1

>prot_H-elongata_contig5519.12927.1 ID=prot_H-elongata_contig5519.12927.1|Name=mRNA_H-elongata_contig5519.12927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
MVMATLEGVTAFGLNYPFPTPPSSARENPKGTASKPQDWLVEVMSQWFKL
PLPTLSTAPTAKVARCASSAADDVRVAIQELHNANAKLRAEVLALHSYIE
ERGFTPEGRESQGDPFARLAVSLPQPQPPCPSNGPSTGTTSKRLPPKLPR
EARLAALALLWAAAVSAGGIFVPIAIGEGAARTLRWLDDGETLEPELLRR
YFAVDGGRRRLQQLYRRRWSLSLVPVRSNGEIVPQRDDNLRPTGGELAGA
WNELHVQ*
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mRNA from alignment at H-elongata_contig5519:8520..10627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5519.12927.1 ID=mRNA_H-elongata_contig5519.12927.1|Name=mRNA_H-elongata_contig5519.12927.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2108bp|location=Sequence derived from alignment at H-elongata_contig5519:8520..10627+ (Himanthalia elongata Himel1 dioecious)
GGCGCGTTGATGGTGATGGCAACGCTCGAGGGAGTCACCGCGTTCGGCTT
AAATTATCCCTTCCCCACGCCGCCATCGAGCGCTAGAGAAAACCCCAAGG
GGACGGCTTCCAAACCCCAGGTGCGAGCGCGTATCATGCCATAAGCTCGA
AGCGCACGAAACTGCCTCCTCCTCACTATTAATAACATGCTTGCATCGAA
GACCTCCTTTTTGCGTCCGAGTCCGTCGCTATGCACCGAACTCACCCTCT
AAATTATGTGTTTTGTTATCCCATTTATTCCATTTATTCTGGGCGTCAGA
CTTGTGAACGCACCAGCAGGGGTGACGTAAGAGAAAGGTCACATAGGATT
TCTCCGCCTTCCTTCTGTGGTCCTTGCCTTAATTTTTTAATCTCATGAAG
GATTCAGCCGTCCCTTTCCCTCGTGGACCGTGAAGTATACTGTATATAGT
ATACTATATATAGTATGTCGAATTTTGTGTACCCACGAAATAATCGCTCT
CCATTTTTTGGGCATGATCTGAGAGAAAATCCCAGTTCGTGTGACTGCGC
CGAGTTTCGAACTCACGTCCCAATGTCAGAAGGTTTCGAGGTTACCAACT
GAACCACCGGGGCGAGCGATCTATACTAAATACTTGATACTTTATATGAT
ACGGTACGGTACGGTACGGTACGAGCACACGACAACGTCCGACAACGTTT
AAGGCATGGTTCTCCCATCCGCTCGGGTCGACTTGACCTGCTTAGGAACG
TTTGCCGCGCTGTACTACGAAGATGTTCGCTGTATCCGCTAAACACTATA
CTGTATATATATATGCCTCTCCCTCTCTCCCTCCGCCCCGTCCCCCGTCG
TCACCATGCCCTCTGCTCCAGGATTGGCTGGTTGAAGTCATGTCGCAGTG
GTTCAAGCTGCCACTCCCTACGTTATCTACTGCGCCCACGGCAAAGGTGG
CACGATGTGCATCGTCAGCTGCGGATGACGTCAGGGTGGCTATTCAGGAG
GTCAGCAGCCCGAACACATCCTTTGACGAGATCGATAAGAGCGCAGAGTT
CAGTCGCGTGTCGTTGATAATTATACGAGCTTTGCGAAACCTCTCCCATT
GTCTGAGAAAAAAAGTACCGGCGTTTATCAACATTTATTTCTCCGTTGTG
GCTAAGCGGCCGGATATTTGTCTTTGCCCTCTCTCGAGTGACAGACCATC
TTCAGTGTTGGACCTACAGCTCTATATGTCCCCAATCCCCGGTATAAACA
CGATGCGCAGCTGCACAACGCGAACGCGAAGCTGAGGGCGGAAGTTTTGG
CGCTCCACTCGTACATAGAAGAGCGAGGCTTTACGCCCGAAGGAAGGGAG
TCCCAAGGCGATCCCTTCGCGAGACTCGCCGTATCGTTACCACAGCCGCA
GCCACCATGCCCCTCGAATGGCCCCTCCACGGGAACGACTTCAAAGCGTC
TCCCCCCCAAGCTGCCGCGAGAGGCACGACTGGCCGCGCTGGCTCTGCTC
TGGGCGGCGGCTGTATCAGCCGGAGGCATCTTCGTGCCGATCGCTATTGG
GGAAGGAGCGGCGCGGACGTTACGATGGCTGGACGATGGCGAAACCCTTG
AGCCGGAGCTTTTGAGGCGTTATTTTGCCGTAGACGGAGGGCGTCGTAGA
TTGCAACAGCTGTATCGGCGGCGATGGAGTTTGAGCCTTGTGCCAGTTCG
GTCGAACGGGGAGATCGTACCACAGCGCGATGACAATCTTCGTCCGACGG
GTGGCGAGCTCGCGGGCGCGTGGAATGAGCTCCACGTCCAGTAATTAAAG
GGTTTTCGCCGTTTTTGTGACCTGAGCTGTTGCCGTGAAACCCACAATTG
TAGCGGTACCGTGTGCGGGGTCTTCTGCACTTGAGCGTAGGAGGCATCTT
CCGCAATCCTTCACCAACTAACCCATGATTCTCTCGTCCCCCGCGCCAAG
CGCGACGAGTTGTTTGGTGGTTTAGCTTTTGAGCATGAGCACGCGATTTC
TAGTATCATGGTCTTTACTGGAACATAAGAGAAAATGCGGCCGGGAGGGT
GTAAAACGGTGTGGGGGCGGGAGGGAGAAAATGAACTGGGTGGGGCACTA
TACTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig5519:8520..10627+

>mRNA_H-elongata_contig5519.12927.1 ID=mRNA_H-elongata_contig5519.12927.1|Name=mRNA_H-elongata_contig5519.12927.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig5519:8520..10627+ (Himanthalia elongata Himel1 dioecious)
ATGGTGATGGCAACGCTCGAGGGAGTCACCGCGTTCGGCTTAAATTATCC
CTTCCCCACGCCGCCATCGAGCGCTAGAGAAAACCCCAAGGGGACGGCTT
CCAAACCCCAGATGGTGATGGCAACGCTCGAGGGAGTCACCGCGTTCGGC
TTAAATTATCCCTTCCCCACGCCGCCATCGAGCGCTAGAGAAAACCCCAA
GGGGACGGCTTCCAAACCCCAGGATTGGCTGGTTGAAGTCATGTCGCAGT
GGTTCAAGCTGCCACTCCCTACGTTATCTACTGCGCCCACGGCAAAGGTG
GCACGATGTGCATCGTCAGCTGCGGATGACGTCAGGGTGGCTATTCAGGA
GGATTGGCTGGTTGAAGTCATGTCGCAGTGGTTCAAGCTGCCACTCCCTA
CGTTATCTACTGCGCCCACGGCAAAGGTGGCACGATGTGCATCGTCAGCT
GCGGATGACGTCAGGGTGGCTATTCAGGAGCTGCACAACGCGAACGCGAA
GCTGAGGGCGGAAGTTTTGGCGCTCCACTCGTACATAGAAGAGCGAGGCT
TTACGCCCGAAGGAAGGGAGTCCCAAGGCGATCCCTTCGCGAGACTCGCC
GTATCGTTACCACAGCCGCAGCCACCATGCCCCTCGAATGGCCCCTCCAC
GGGAACGACTTCAAAGCGTCTCCCCCCCAAGCTGCCGCGAGAGGCACGAC
TGGCCGCGCTGGCTCTGCTCTGGGCGGCGGCTGTATCAGCCGGAGGCATC
TTCGTGCCGATCGCTATTGGGGAAGGAGCGGCGCGGACGTTACGATGGCT
GGACGATGGCGAAACCCTTGAGCCGGAGCTTTTGAGGCGTTATTTTGCCG
TAGACGGAGGGCGTCGTAGATTGCAACAGCTGTATCGGCGGCGATGGAGT
TTGAGCCTTGTGCCAGTTCGGTCGAACGGGGAGATCGTACCACAGCGCGA
TGACAATCTTCGTCCGACGGGTGGCGAGCTCGCGGGCGCGTGGAATGAGC
TCCACGTCCAGTAACTGCACAACGCGAACGCGAAGCTGAGGGCGGAAGTT
TTGGCGCTCCACTCGTACATAGAAGAGCGAGGCTTTACGCCCGAAGGAAG
GGAGTCCCAAGGCGATCCCTTCGCGAGACTCGCCGTATCGTTACCACAGC
CGCAGCCACCATGCCCCTCGAATGGCCCCTCCACGGGAACGACTTCAAAG
CGTCTCCCCCCCAAGCTGCCGCGAGAGGCACGACTGGCCGCGCTGGCTCT
GCTCTGGGCGGCGGCTGTATCAGCCGGAGGCATCTTCGTGCCGATCGCTA
TTGGGGAAGGAGCGGCGCGGACGTTACGATGGCTGGACGATGGCGAAACC
CTTGAGCCGGAGCTTTTGAGGCGTTATTTTGCCGTAGACGGAGGGCGTCG
TAGATTGCAACAGCTGTATCGGCGGCGATGGAGTTTGAGCCTTGTGCCAG
TTCGGTCGAACGGGGAGATCGTACCACAGCGCGATGACAATCTTCGTCCG
ACGGGTGGCGAGCTCGCGGGCGCGTGGAATGAGCTCCACGTCCAGTAA
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