prot_H-elongata_contig55172.12925.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55172.12925.1
Unique Nameprot_H-elongata_contig55172.12925.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length255
Homology
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 2.610e-81
Identity = 148/245 (60.41%), Postives = 175/245 (71.43%), Query Frame = 0
Query:    4 GEEEDSSISH-DGDTSSEEMLVIIAIVVGCGVLTLVILCAVRKVMDLCLLRYDPTGSISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSKKEGFSSSGAAGSAVAEEGAAEDVLENG---GQEGVMTDIAPVAPESTAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEARKSWCDRVVRFMSDRLGIRLVAPTTVRFSSSRRTYTNRDV 244
            GEE D ++   + + + + ML+ I+IVVGCGVLTL++LC VRKVMDLCLLR DPTGS+ YSQEEGL K +IERLP TRYK+P     AQ K  K     +G    G   +A  EEG       +G   G+ G       +A E     GARDSTEDMCAICL+EYE GDELRIIPGC H+FHK+CIDPWLETKAVCAYCKA VEAR++ CDR+ R +S+RLGI LVAPTT+RFSSSRRTYTN DV
Sbjct:  233 GEEADEAMEEAEAEQARDVMLITISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSG-SAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDV 476          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 4.870e-81
Identity = 146/226 (64.60%), Postives = 163/226 (72.12%), Query Frame = 0
Query:   22 MLVIIAIVVGCGVLTLVILCAVRKVMDLCLLRYDPTGSISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSKKEGFSSSGAAGSAVAEEGAA--EDVLENGGQEGVMTDIAPVA-PESTAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEARKSWCDRVVRFMSDRLGIRLVAPTTVRFSSSRRTYTNRDV 244
            ML+ I+IVVGCGVLTL++LC VRKVMDLCLLR DPTGS+ YSQEEGL K +IERLP TRYK+P     AQ K  K     +G        +A  EEG     D+    G        A VA  E     GARDSTEDMCAICL+EYE GDELRIIPGC H+FHK+CIDPWLETKAVCAYCKA VEAR++ CDRV R +SDRLGI LVAPTT+RFSSSRRTYTN DV
Sbjct:   59 MLITISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPVSGT-AQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDV 283          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.760e-15
Identity = 67/191 (35.08%), Postives = 91/191 (47.64%), Query Frame = 0
Query:   20 EEMLVIIAIVVGCGVLTLVILCAVRKVMDLCLLRYDPTGS-ISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSKKE---GFSSSGAAGSAVAEEGAAEDVLENGGQ-EG--VMTDIAPVAPESTAAAGARDSTED-MCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKV 202
            E +LV I   V C  LT   L  +RK++ L     DP  + ++ S  EGL    I  +P   +  P         AA  G+  +   G  +  A G+A             GG  EG   M D+           G R+   D MCAICL ++E GD+LR++P C HQ+HK C+DPWLETKA+C  CK +V
Sbjct:  116 ELLLVGIYSTVACTALTCAFLIVLRKLIRLYAWWRDPAAAALASSAHEGLSSLVISWIPVVTFVSPGGDACCAAPAAAXGAGADAATGVDAEPACGAADXXXXXXXXXXXRGGDAEGXAAMGDVE----------GGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A8J5S5L1_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S5L1_ZIZPA)

HSP 1 Score: 77.4 bits (189), Expect = 9.420e-13
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0
Query:  157 CAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVE 203
            CA+CL+E+E GD+LR++P C H FH +CIDPWLET+  C  C+A +E
Sbjct:  128 CAVCLMEFEDGDDLRLLPHCSHAFHPECIDPWLETRVTCPLCRANLE 174          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: UPI001F5CDF93 (E3 ubiquitin-protein ligase EL5-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDF93)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  149 ARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKA 200
            A DST   CA+CL +YEHG+ELR++PGC+H FH+ C+D WL  +  C  C++
Sbjct:   90 AADSTR--CAVCLADYEHGEELRLLPGCRHSFHRQCVDVWLRRRPSCPLCRS 139          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: UPI001F5D7E2B (E3 ubiquitin-protein ligase EL5-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D7E2B)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-12
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 0
Query:  145 AAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKV-EARKSWCDRVVRFMSD 218
            AA GA +  E  CA+CL+E+ HG+  R++PGC H FH  CI+PWL  ++ C  C+A V E R +      RF  D
Sbjct:   98 AAGGAEEKAE--CAVCLVEFAHGEAGRLVPGCGHGFHAACIEPWLRVRSTCPLCRAAVVEERSAGLSAADRFPRD 170          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A0E0MPQ0_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0MPQ0_ORYPU)

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-12
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0
Query:  140 APESTAAAGARDSTEDM-CAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEAR 205
            APE  AAA A D  +   CA+CL EYE GDELR +PGC H FH+ C+D WL  +  C  C++   AR
Sbjct:   75 APEEAAAAAAIDVGDGTGCAVCLAEYEDGDELRPLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 141          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A0D9WKM3_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WKM3_9ORYZ)

HSP 1 Score: 76.3 bits (186), Expect = 2.730e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 0
Query:  127 GGQEGVMTDIAPVAPESTAAA--GARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEA 204
            GG+EGV   +    P    AA  GAR   E  CA+CL  ++  D LR++P C+H FH DC+D WLE+KA C  C+A+V+A
Sbjct:  102 GGEEGVAKAVIESLPFFRFAALRGARQGLE--CAVCLARFDDADLLRLLPRCRHAFHLDCVDRWLESKASCPLCRARVDA 179          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: UPI001F5CCC9B (E3 ubiquitin-protein ligase EL5-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CCC9B)

HSP 1 Score: 72.4 bits (176), Expect = 4.590e-12
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  143 STAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKV 202
            ++AA GA +  E  CA+CL+E+ HG+  R++PGC H FH  CI+PWL  ++ C  C+A V
Sbjct:   95 TSAAEGAEEKAE--CAVCLVEFAHGEAGRLVPGCGHGFHAACIEPWLRVRSTCPLCRAAV 152          
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A3B6MVV3_WHEAT (RING-type domain-containing protein n=6 Tax=Triticinae TaxID=1648030 RepID=A0A3B6MVV3_WHEAT)

HSP 1 Score: 73.2 bits (178), Expect = 5.330e-12
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0
Query:  141 PESTAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKA-VCAYCKAKVEARKSWCD 210
            PE+  A     +  D CA+CL EY  GDE+R++P C+H FH++C+D WL T+A  C  C+A V A     D
Sbjct:  111 PEAVVADEGVGADADACAVCLAEYAAGDEVRVLPACRHGFHRECVDRWLLTRAPTCPVCRAPVAAHLDGAD 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYP0_9PHAE2.610e-8160.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LEX7_ECTSI4.870e-8164.60RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZK41_9STRA1.760e-1535.08RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A8J5S5L1_ZIZPA9.420e-1357.45RING-type domain-containing protein n=1 Tax=Zizani... [more]
UPI001F5CDF931.370e-1251.92E3 ubiquitin-protein ligase EL5-like n=2 Tax=Loliu... [more]
UPI001F5D7E2B1.400e-1244.00E3 ubiquitin-protein ligase EL5-like n=1 Tax=Loliu... [more]
A0A0E0MPQ0_ORYPU1.600e-1250.75Uncharacterized protein n=1 Tax=Oryza punctata Tax... [more]
A0A0D9WKM3_9ORYZ2.730e-1246.25RING-type domain-containing protein n=1 Tax=Leersi... [more]
UPI001F5CCC9B4.590e-1246.67E3 ubiquitin-protein ligase EL5-like n=1 Tax=Loliu... [more]
A0A3B6MVV3_WHEAT5.330e-1243.66RING-type domain-containing protein n=6 Tax=Tritic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 157..198
e-value: 6.9E-5
score: 32.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 155..199
e-value: 5.9E-11
score: 42.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 157..199
score: 10.335
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 136..208
e-value: 7.5E-19
score: 68.7
NoneNo IPR availablePANTHERPTHR45977FAMILY NOT NAMEDcoord: 23..202
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..254
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 22..43
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 153..205
NoneNo IPR availableTMHMMTMhelixcoord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55172contigH-elongata_contig55172:945..3244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55172.12925.1mRNA_H-elongata_contig55172.12925.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55172 945..3244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55172.12925.1 ID=prot_H-elongata_contig55172.12925.1|Name=mRNA_H-elongata_contig55172.12925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
EDGGEEEDSSISHDGDTSSEEMLVIIAIVVGCGVLTLVILCAVRKVMDLC
LLRYDPTGSISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSK
KEGFSSSGAAGSAVAEEGAAEDVLENGGQEGVMTDIAPVAPESTAAAGAR
DSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKA
KVEARKSWCDRVVRFMSDRLGIRLVAPTTVRFSSSRRTYTNRDVRKRRSR
GFRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD