mRNA_H-elongata_contig116427.1292.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.700e-58 Identity = 104/123 (84.55%), Postives = 109/123 (88.62%), Query Frame = 1
Query: 1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQE 369
RCLIVGLSALR TQQ FDPA L+ET+EAVFDATACYFPVTFTPPPNDPH ISPDAL+TGLE VLVGSPGMA HVLPMLLDKLSSEVSTAKEA+LK MVA VRAF P VG HLRAIG AM +E
Sbjct: 275 RCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 397
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI) HSP 1 Score: 202 bits (514), Expect = 8.540e-58 Identity = 105/123 (85.37%), Postives = 109/123 (88.62%), Query Frame = 1
Query: 1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQE 369
RCLIVGLSALR TQQ FDPA L+ETSEAVFDATACYFPVTFTPPPNDPH ISPDAL+TGLE VLVGSPGMA HVLPMLLDKLSSEVSTAKEA+LK MVA VRAF P VG HLRAIG AM +E
Sbjct: 229 RCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 351
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 3.790e-21 Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 372
RCLI+ L+ + Q F PAA + EA+FD TACYFP+TFTPPPNDP+ I+PD L L L P MA +LP+L+DKL+S AK AL + A R + +L ++ A+FQE+
Sbjct: 249 RCLILCLNIISRVQVIF-PAASDAHIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRAMLGNLASVTGALFQEI 371
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A2P6TWM0_CHLSO (MMS19 nucleotide excision repair protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWM0_CHLSO) HSP 1 Score: 87.8 bits (216), Expect = 1.170e-17 Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 1 RCLIVGLSAL--------RITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 372
RCL++ A+ R ++ LEE++E +F+ ACYFPVTFTPPPNDP+KI+ L GLER L P A V+P++ +KLSS + AK AL + A ++ P + H A+ A+ E+
Sbjct: 200 RCLLLSFDAIQALLALYHRQPEEALCRERLEESAEELFEVLACYFPVTFTPPPNDPNKITRADLARGLERTLAAEPLFAPFVVPLIAEKLSSSIRQAKLDALSLLGACAASYGPAPLADHASALWAALRPEL 331
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A316YNL1_9BASI (MMS19 nucleotide excision repair protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YNL1_9BASI) HSP 1 Score: 87.0 bits (214), Expect = 2.260e-17 Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 1
Query: 1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEVRYA 381
R L+ + R+ D+D E +EA FD T CYFP+TF PPP+DP+ IS + L+ L +VL+ SP +A H +P+LL+KL + AK L + A+ F AH + EA E+ +A
Sbjct: 193 RNLVYIFAMDRVVMLDWDDIMDSELTEAFFDTTYCYFPITFRPPPDDPYGISTNTLRLSLRKVLIASPLLAPHAMPLLLEKLQASGGNAKRDTLDTLKEALPVFGRAAAKAHESPLWEAFKIEIMHA 319
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A2P6V489_9CHLO (MMS19 nucleotide excision repair protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V489_9CHLO) HSP 1 Score: 87.0 bits (214), Expect = 2.300e-17 Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 1 RCLIVGLSALRIT--------QQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAI 348
RCL++ A R T ++ LEE+SE +F+ AC FP+ FTPPPNDP++I+ + L GLE VL P A H++P++++KLSS + AK +L + A ++ P + H I
Sbjct: 908 RCLLLSFEATRSTLALYHAQPEESLCRGRLEESSEELFEVLACNFPIAFTPPPNDPNRITREQLAAGLEAVLAAEPRFAPHLVPLIMEKLSSSIRQAKLDSLSLLGACAASYGPRPLAPHASTI 1031
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: E1Z4Q7_CHLVA (MMS19 nucleotide excision repair protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z4Q7_CHLVA) HSP 1 Score: 83.2 bits (204), Expect = 4.970e-16 Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 1 RCLIVGLSALR----ITQQDFDPAA----LEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 372
RCL++ A+R + + D + LEE +E +F+ ACYFPVTFTPPPNDP++IS + L GLE LV P A +++P+ +KLSS + AK +L + A + P + H+ + A+ E+
Sbjct: 192 RCLLLCFEAVRCLLALYHRQPDTSLCHERLEEGAEELFEVLACYFPVTFTPPPNDPNRISREDLAAGLEAALVAEPLFAPYLVPLACEKLSSTLRQAKLDSLSLLGACAEGYGPAPLAGHVSTLWSALRPEL 323
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL) HSP 1 Score: 82.0 bits (201), Expect = 1.250e-15 Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 19 LSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 372
+S L + D A L++ FD +CYFP+TFTPPPNDP+ I+ + L T L + S +ARHVLP LL+KLSS V+ AK +++ +V A++ +L I A++ EV
Sbjct: 205 MSTLASVFEKHDTAILQQ----YFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINVTLLYLHTIATALYHEV 318
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: UPI000D738490 (MMS19 nucleotide excision repair protein homolog isoform X1 n=4 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D738490) HSP 1 Score: 80.9 bits (198), Expect = 3.160e-15 Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEVR 375
R L+ R+ Q F +L E +F+ ACYFPV F PPPNDPH I+ D L+ L+ V+ +P A++ P+LL+K+SS+V +AK ALK ++A + + + +L ++ + +EVR
Sbjct: 179 RNLMAAFRCSRLICQYF---SLGTMVEDMFEVNACYFPVDFVPPPNDPHGITRDDLRLALQHVMSATPLFAQYCYPLLLEKMSSDVQSAKVDALKTLIACLPVYQMNHLQEYLGSLFSQIIREVR 300
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: UPI001455587C (MMS19 nucleotide excision repair protein homolog isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001455587C) HSP 1 Score: 80.5 bits (197), Expect = 4.340e-15 Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 19 LSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 372
L+A +I Q + +E +F+ T+CYFP+ F PPPNDPH IS D+L GL L G+P A LP+L++KL+SE+ +AK A + + A + + +L A+ +EV
Sbjct: 232 LTAFQIVQTLIQHFPIGIFAEELFEVTSCYFPIDFRPPPNDPHGISTDSLIQGLRGCLAGTPKFAEFCLPLLMEKLASELQSAKIDAFETLAACAPVYGAKHLKDYLEAVWSYCRKEV 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116427.1292.1 >prot_H-elongata_contig116427.1292.1 ID=prot_H-elongata_contig116427.1292.1|Name=mRNA_H-elongata_contig116427.1292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKback to top mRNA from alignment at H-elongata_contig116427:902..1878- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116427.1292.1 ID=mRNA_H-elongata_contig116427.1292.1|Name=mRNA_H-elongata_contig116427.1292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at H-elongata_contig116427:902..1878- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116427:902..1878- >mRNA_H-elongata_contig116427.1292.1 ID=mRNA_H-elongata_contig116427.1292.1|Name=mRNA_H-elongata_contig116427.1292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig116427:902..1878- (Himanthalia elongata Himel1 dioecious)back to top |