mRNA_H-elongata_contig55129.12919.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: D7FMP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP2_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 6.560e-19 Identity = 52/117 (44.44%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMG----AATSSFLLTPAEGNVHAFKASATCAVFDILV 339
FV+P+GGE+PLHDHP+M VLS+ILFG+L V SYD+E E QR G AAT SFLLTP+EGNVH+F+A CAVFD+L+
Sbjct: 154 FVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDMEEXXXXXXXXXXXXXXXXXXXTFADAELRRKEAQRVVFAXXXXXXEGGRVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLI 270
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A7S0LJF8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LJF8_9EUKA) HSP 1 Score: 80.5 bits (197), Expect = 5.500e-16 Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDILV 339
FV+P G +PLHDHPHMTVLSK++FG+LHV SYDL A+ L P + + C+ + V+ A ++ L P GN+HAF+A AVFD+L+
Sbjct: 106 FVLPAGSSIPLHDHPHMTVLSKLIFGALHVTSYDLPEAASEPRPALFGGLRPRQRQRRLRCAPAQRT------------VVAAPAATLKLDPVHGNLHAFRALNDTAVFDVLL 206
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A7S0IPW3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPW3_9EUKA) HSP 1 Score: 79.7 bits (195), Expect = 1.140e-15 Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSR--VMGAATSSFLLTPAEGNVHAFKASATCAVFDILV 339
F++P G +PLHDHPHMTVLSK+LFG LHV SYD+ A EEA +SP + + S L + ++ +P+R V+ A + + L GN+HAF+A AVFD+L+
Sbjct: 107 FMLPAGTSIPLHDHPHMTVLSKLLFGKLHVTSYDMPAA------EEAGEVSPRPA----LFSALRSRRRHHSLRCAPARRRVVEAPSPTLRLDAIRGNLHAFQALNDTAVFDVLL 211
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A835J031_9MAGN (Cysteine dioxygenase n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835J031_9MAGN) HSP 1 Score: 75.1 bits (183), Expect = 1.670e-13 Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLER-ASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
F +P G +PLH+HP MTV SK+LFGS+H+ SYD E A H+ E + PS ++ +G R V++ S +S L A GN+H F A +CAV D+L
Sbjct: 285 FCLPPSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWETDAPHHSKENTNHSQLPS----------VQPQGTRLAKVNTDSVFTAPCNTSILYPAAGGNMHCFTALTSCAVLDVL 387
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: UPI0018FF8DB7 (plant cysteine oxidase 4-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0018FF8DB7) HSP 1 Score: 70.1 bits (170), Expect = 3.350e-12 Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEG-NVHAFKASATCAVFDIL 336
F +PEGGELPLHDHP MTV+SK+L+GS+HV +YD + +++ G G++ +V A + + L PA G N+H+F+A + CA+ D+L
Sbjct: 86 FCLPEGGELPLHDHPGMTVMSKLLYGSVHVKAYDWIKM-----------------QISSSTDRTFGLGKKV-----VDKVWSAPSEARALFPASGGNIHSFRAKSGCAILDVL 176
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: UPI001C4EF2C3 (plant cysteine oxidase 2-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4EF2C3) HSP 1 Score: 68.9 bits (167), Expect = 1.430e-11 Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
F +P+ G +PLH+HP MTV SK+LFGS+H+ SYD H E +PS + + V G R + + S +S L A GN+H F A +CAV D+L
Sbjct: 117 FCLPQSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWATDVSHNTNEN---FNPSHYQSSYV-------GNRLVKIKNDSVFTVPCNTSILYPAAGGNMHCFTAVTSCAVLDVL 218
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: E0CRP0_VITVI (Cysteine dioxygenase n=3 Tax=Vitis TaxID=3603 RepID=E0CRP0_VITVI) HSP 1 Score: 67.8 bits (164), Expect = 2.520e-11 Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
F P GG PLHDHP+MTVLSK+L+GS+HV +YD +A + C T+ G N++ + R S L + GN+H+F A CA+ D+L
Sbjct: 93 FCFPAGGTFPLHDHPNMTVLSKLLYGSVHVKAYDWVKAENSS------------------CRTIGLAGIVTNSIFNAPR-----EPSILFPRSGGNIHSFTALTPCAILDVL 181
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: UPI001CC333B0 (plant cysteine oxidase 2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC333B0) HSP 1 Score: 68.2 bits (165), Expect = 2.720e-11 Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
F +P+ G +PLH+HP MTV SK+LFGS+H+ SYD H E L+PS + CS+ G R + + S +S L A GN+H F A +CAV D+L
Sbjct: 117 FCLPKSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWVTDVSHNTSEN---LNPSHFQ----CSS----GIRLVKIKNDSIFTVPCNTSILYPAAGGNMHCFTAVTSCAVLDVL 217
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A446KF92_TRITD (Cysteine dioxygenase n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KF92_TRITD) HSP 1 Score: 66.2 bits (160), Expect = 2.750e-11 Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
F +P+ +PLH+HP MTV SK+LFGS+H+ SYD R+ AG AL+ S +G R +++ + V G+A + L GN+H F A CAV D++
Sbjct: 31 FCLPKHAVIPLHNHPGMTVFSKMLFGSMHLKSYDWARSISEAG---TTALTTS-------------DGARLAKINTNNVVDGSAETIVLYPENGGNLHCFTALTPCAVLDVM 126
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: M7Z4A7_TRIUA (Cysteine dioxygenase n=4 Tax=Triticum TaxID=4564 RepID=M7Z4A7_TRIUA) HSP 1 Score: 67.4 bits (163), Expect = 2.910e-11 Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
F +P+ +PLH+HP MTV SK+LFGS+H+ SYD RA+ AG A + +G R +++ + V +A + L GN+H F A CAV D++
Sbjct: 77 FCLPKHAVIPLHNHPGMTVFSKMLFGSMHLKSYDWARANSEAGPNNA---------------LITSDGARLAKINTNAVVDASAETIVLYPENGGNLHCFTALTPCAVLDVM 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55129.12919.1 >prot_H-elongata_contig55129.12919.1 ID=prot_H-elongata_contig55129.12919.1|Name=mRNA_H-elongata_contig55129.12919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALback to top mRNA from alignment at H-elongata_contig55129:256..1347- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55129.12919.1 ID=mRNA_H-elongata_contig55129.12919.1|Name=mRNA_H-elongata_contig55129.12919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at H-elongata_contig55129:256..1347- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55129:256..1347- >mRNA_H-elongata_contig55129.12919.1 ID=mRNA_H-elongata_contig55129.12919.1|Name=mRNA_H-elongata_contig55129.12919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig55129:256..1347- (Himanthalia elongata Himel1 dioecious)back to top |