prot_H-elongata_contig55100.12915.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55100.12915.1
Unique Nameprot_H-elongata_contig55100.12915.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length407
Homology
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BLAST of mRNA_H-elongata_contig55100.12915.1 vs. uniprot
Match: D8LIG9_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG9_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 7.800e-159
Identity = 283/450 (62.89%), Postives = 317/450 (70.44%), Query Frame = 0 
Query:    1 VPQEWQSSAFSQHSASWGCAYLAAPAVIAWAGDSADRILTLATVTMIISAAIVEMTFVDTRPEGHRTQRMSSVVGEYLIEGARDLAEV-----------GKKMSGVDLAEYFNAGKDRESSASA--------------NSLRPQS------VVNARQSGVGAKEGQLRHRNI-------IGNEKSSAVTGTNGHPVKANGHSLVKQRRSTVDNPRRNGVVDGVASTTSIVEANGGDRRRSREGR------MSGHALVGVFKGMMKQRLVLVTSVLQVIRPAQDLAPLVAQKLSGGASVLAGINSSRSLCRALVPMTPLIPSLVRLAGGSSGEGAAAKMRGDRLVAALMCVFMAGLVVGVPAVETLQDLHRLMFFNGLCYIVRDSTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSTFLTGWLSGHSVSLPYYVVAVCDLIYAFTYLFI 406
            VP EWQSSAFSQHSASWGCAYLAAPA+IAWAGDSAD ILT+AT+TMIISAAIVE+TFVDTRPEG RTQRMS VV +YL+EGA +LAEV           GKK+SGV+LAEYFN G++R++ + +                LR  S      VV+    G G  EG LRHRN+       IG +  +   G  G      G  L     ++           GV     +  A G   + + EGR      MS  ALVGVFKGMMK+RLVLVT VLQ +RPAQDLAPLVA K SGGASVLAGI SSRSLCR LVPMTPLIP LVRLAGGSS  GAAAKM GDR VAA MCV MAGLV  VPAV TL++LH LM F GLCYIVR+STAGAVMARAAGTASVGAFFGWQHCIKGIQGTFS FLTGWLSG+S+SLPYYVV +CDL+YAFTYL+I
Sbjct:  264 VPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIVEITFVDTRPEGCRTQRMSRVVSDYLLEGASNLAEVAIEXXXXXXEVGKKVSGVNLAEYFNGGRERDTPSLSLPXXXXXXXXXXXXXGLRQSSGTAAGGVVDL--GGSGXXEG-LRHRNVGXXXXXXIGVDAQTNGFGGRGAADGGAGARLDVPVEASA----------GVCGVGELPAAGGAKGKGAGEGRKILAEGMSASALVGVFKGMMKERLVLVTFVLQAVRPAQDLAPLVALKFSGGASVLAGITSSRSLCRVLVPMTPLIPWLVRLAGGSSSAGAAAKMGGDRAVAAFMCVLMAGLVACVPAVGTLRELHHLMAFKGLCYIVRESTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSHFLTGWLSGYSISLPYYVVGICDLLYAFTYLYI 700
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BLAST of mRNA_H-elongata_contig55100.12915.1 vs. uniprot
Match: A0A835YM00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM00_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.660e-43
Identity = 91/195 (46.67%), Postives = 118/195 (60.51%), Query Frame = 0 
Query:  212 LVGVFKGMMKQRLVLVTSVLQVIRPAQDLAPLVAQKLSGGASVLAGINSSRSLCRALVPMTPLIPSL-VRLAGGSSGEGAAAKMRGDRLVAALMCVFMAGLVVGVPAVETLQDLHRLMFFNGLCYIVRDSTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSTFLTGWLSGHSVSLPYYVVAVCDLIYAFTYLF 405
            +V VF+ M+++RLVL    LQVIRPAQDLAPLV  K   GA+ +A I S RS  R L+P+TP+IP L   L GG+        + GDR VAA+MCV MA L   VP    L  L  +M   GL  ++++ST  A+M+  A   +VGAFFGWQH +KG+ G  S  +TG L       PY+  A CDL+YA  Y+F
Sbjct:    1 MVRVFRSMLQERLVLCIFALQVIRPAQDLAPLVTSKFGAGAAFVASITSVRSTFRMLLPLTPVIPMLHAALGGGTRDPKTGEVVGGDRPVAAVMCVAMALLGALVPLCPNLVVLQVVMAAKGLANVIKESTVSAIMSSLASHGNVGAFFGWQHFMKGLAGVTSHMVTGLLVSRGPEHPYFATAACDLLYALIYVF 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55100.12915.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIG9_ECTSI7.800e-15962.89Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
A0A835YM00_9STRA4.660e-4346.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 299..318
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 319..386
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..298
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 406..406
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 387..405
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..37
NoneNo IPR availableTMHMMTMhelixcoord: 383..405
NoneNo IPR availableTMHMMTMhelixcoord: 38..60
NoneNo IPR availableTMHMMTMhelixcoord: 299..321
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 2..406

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55100contigH-elongata_contig55100:320..1540 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55100.12915.1mRNA_H-elongata_contig55100.12915.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55100 320..1540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55100.12915.1 ID=prot_H-elongata_contig55100.12915.1|Name=mRNA_H-elongata_contig55100.12915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
VPQEWQSSAFSQHSASWGCAYLAAPAVIAWAGDSADRILTLATVTMIISA
AIVEMTFVDTRPEGHRTQRMSSVVGEYLIEGARDLAEVGKKMSGVDLAEY
FNAGKDRESSASANSLRPQSVVNARQSGVGAKEGQLRHRNIIGNEKSSAV
TGTNGHPVKANGHSLVKQRRSTVDNPRRNGVVDGVASTTSIVEANGGDRR
RSREGRMSGHALVGVFKGMMKQRLVLVTSVLQVIRPAQDLAPLVAQKLSG
GASVLAGINSSRSLCRALVPMTPLIPSLVRLAGGSSGEGAAAKMRGDRLV
AALMCVFMAGLVVGVPAVETLQDLHRLMFFNGLCYIVRDSTAGAVMARAA
GTASVGAFFGWQHCIKGIQGTFSTFLTGWLSGHSVSLPYYVVAVCDLIYA
FTYLFI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf