mRNA_H-elongata_contig55085.12911.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55085.12911.1
Unique NamemRNA_H-elongata_contig55085.12911.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55085.12911.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.840e-35
Identity = 74/125 (59.20%), Postives = 89/125 (71.20%), Query Frame = 1 
Query:    1 WNTFFWSRRRDWEQAFASLFHGLLA---GRGDGSCSDRSGDW--------RDREGFYLQCPRFTVLWRLVHDRGTSGSGDGGSGRLIPGAAMTQSTRRLRKRLKATGIEFRMPLDPAGDQRDAKA 342
            W +FFWSRRRDWEQAF SL++GL++   G G+G+                R+ EGFYLQCP +TV WRLV +RG  G+ D G+ RL+P A MT+STRRLRKRL A GIEF MPLDPAGDQRDA+A
Sbjct:  703 WTSFFWSRRRDWEQAFGSLYYGLISRNRGGGEGARGXXXXXXXXXAAEGEREGEGFYLQCPLYTVAWRLVRERG--GAEDEGT-RLVPAAVMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQA 824
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BLAST of mRNA_H-elongata_contig55085.12911.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.860e-32
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:    1 WNTFFWSRRRDWEQAFASLFHGLLA---GRGDGSCSDRSGDWRDREG---------FYLQCPRFTVLWRLVHDRGTSGSGDGGSGR--LIPGAAMTQSTRRLRKRLKATGIEFRMPLDPAGDQRDAKA 342
            W +FFWSRRRDWEQAF SL++GL++   G G+G+   R                  FYLQCP +TV+W LV +RG  G+ D G+ R  L+P A MT+STRRLRKRL A GIEF MPLDPAGDQRDA+A
Sbjct:  397 WTSFFWSRRRDWEQAFGSLYYGLISRNRGGGEGARGGRXXXXXXXXXXXXXXXXXXFYLQCPLYTVVWTLVRERG--GAEDDGTRRRRLVPAALMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQA 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55085.12911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K212_9PHAE2.840e-3559.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK2_ECTSI3.860e-3255.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55085contigH-elongata_contig55085:3202..3859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002020.1
Exons2
Model size343
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.548804-CDS-H-elongata_contig55085:3202..33231622930897.548804-CDS-H-elongata_contig55085:3202..3323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 3203..3323 -
1691679616.2471654-CDS-H-elongata_contig55085:3202..33231691679616.2471654-CDS-H-elongata_contig55085:3202..3323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 3203..3323 -
1622930897.5773408-CDS-H-elongata_contig55085:3638..38591622930897.5773408-CDS-H-elongata_contig55085:3638..3859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 3639..3859 -
1691679616.2585893-CDS-H-elongata_contig55085:3638..38591691679616.2585893-CDS-H-elongata_contig55085:3638..3859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 3639..3859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55085.12911.1prot_H-elongata_contig55085.12911.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55085 3203..3859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55085.12911.1

>prot_H-elongata_contig55085.12911.1 ID=prot_H-elongata_contig55085.12911.1|Name=mRNA_H-elongata_contig55085.12911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
WNTFFWSRRRDWEQAFASLFHGLLAGRGDGSCSDRSGDWRDREGFYLQCP
RFTVLWRLVHDRGTSGSGDGGSGRLIPGAAMTQSTRRLRKRLKATGIEFR
MPLDPAGDQRDAKA
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mRNA from alignment at H-elongata_contig55085:3202..3859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55085.12911.1 ID=mRNA_H-elongata_contig55085.12911.1|Name=mRNA_H-elongata_contig55085.12911.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=658bp|location=Sequence derived from alignment at H-elongata_contig55085:3202..3859- (Himanthalia elongata Himel1 dioecious)
TGGAACACCTTTTTTTGGTCCCGGCGTCGAGACTGGGAACAGGCTTTCGC
CAGCCTGTTCCACGGGCTGCTGGCAGGAAGGGGCGACGGGTCCTGCTCCG
ATCGTTCTGGGGATTGGCGCGACCGGGAAGGTTTTTACCTGCAGTGTCCC
CGGTTCACCGTGCTGTGGAGGCTCGTGCATGACAGAGGGACAAGCGGCAG
TGGTGATGGCGGTAGCGGTCGGTGCGAAACTTCATGGGTAGCACGAGTTT
TTAACACCCTTGCGCCGAGTCCATGGATGCACTTACCGAGCTGGCTCTCG
AGAGTTGCCTTTTTGAGCTCGTTCAGTTCTAAAGCTTACCATTTTTCTAC
CAACGCGTTAAGCATTCTATTCAAACCGATTGGGCTTTGGTGACGCCTCT
CACACTACTACGTCCACGATGCGATTGTTTTGGATATGATGTCGACTAAA
ATAAAAAAGTTACAAAAACACGATTCGACACGGACACGGAGATCAGATGG
GGTTTTCGTGGTTTCCAATTCCCGCGGTTGTGACAGGCTCATCCCCGGAG
CGGCCATGACTCAGTCTACCAGGAGACTGCGAAAACGCCTCAAGGCGACC
GGAATCGAGTTTCGGATGCCTCTGGATCCTGCGGGGGACCAACGCGATGC
GAAGGCAT
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Coding sequence (CDS) from alignment at H-elongata_contig55085:3202..3859-

>mRNA_H-elongata_contig55085.12911.1 ID=mRNA_H-elongata_contig55085.12911.1|Name=mRNA_H-elongata_contig55085.12911.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig55085:3202..3859- (Himanthalia elongata Himel1 dioecious)
TGGAACACCTTTTTTTGGTCCCGGCGTCGAGACTGGGAACAGGCTTTCGC
CAGCCTGTTCCACGGGCTGCTGGCAGGAAGGGGCGACGGGTCCTGCTCCG
ATCGTTCTGGGGATTGGCGCGACCGGGAAGGTTTTTACCTGCAGTGTCCC
CGGTTCACCGTGCTGTGGAGGCTCGTGCATGACAGAGGGACAAGCGGCAG
TGGTGATGGCGGTAGCGGTCGTGGAACACCTTTTTTTGGTCCCGGCGTCG
AGACTGGGAACAGGCTTTCGCCAGCCTGTTCCACGGGCTGCTGGCAGGAA
GGGGCGACGGGTCCTGCTCCGATCGTTCTGGGGATTGGCGCGACCGGGAA
GGTTTTTACCTGCAGTGTCCCCGGTTCACCGTGCTGTGGAGGCTCGTGCA
TGACAGAGGGACAAGCGGCAGTGGTGATGGCGGTAGCGGTCGGCTCATCC
CCGGAGCGGCCATGACTCAGTCTACCAGGAGACTGCGAAAACGCCTCAAG
GCGACCGGAATCGAGTTTCGGATGCCTCTGGATCCTGCGGGGGACCAACG
CGATGCGAAGGCAGCTCATCCCCGGAGCGGCCATGACTCAGTCTACCAGG
AGACTGCGAAAACGCCTCAAGGCGACCGGAATCGAGTTTCGGATGCCTCT
GGATCCTGCGGGGGACCAACGCGATGCGAAGGCA
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