mRNA_H-elongata_contig55085.12910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55085.12910.1
Unique NamemRNA_H-elongata_contig55085.12910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55085.12910.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.650e-57
Identity = 121/155 (78.06%), Postives = 127/155 (81.94%), Query Frame = 1 
Query:    1 ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPHLSLLTFRGQMAVRGLFEFLLEACGSSATGGAGSGMVTRGSARSGVGG--ARAGDVPLLLSRQPFLNASLKALKVRQKGTMHRSRANTGAKEATDVQVLELVGHVLPSAIADLAHSMASACT 459
            ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRP LSLLTFRG MAV GLF+FLLEACG S TG  G G    G A SG GG     GDVPLLLSR+PFLNASLKALKVRQKG MHRSRA   A + + VQVLELVGHVLPSA+ADLA +MASACT
Sbjct:  827 ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHS-TGVVGGG----GLAASGRGGRMGSGGDVPLLLSREPFLNASLKALKVRQKGPMHRSRATVSAGQDSAVQVLELVGHVLPSALADLALAMASACT 976
[Close]
BLAST of mRNA_H-elongata_contig55085.12910.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 9.050e-45
Identity = 95/130 (73.08%), Postives = 102/130 (78.46%), Query Frame = 1 
Query:    1 ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPHLSLLTFRGQMAVRGLFEFLLEACGSSATGGAGSGMVTRG-SARSGVGGARAGDVPLLLSRQPFLNASLKALKVRQKGTMHRSRANTGAKEATDVQV 387
            ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRP LSLLTFRG MAV GLF+FLLEACG S     G G+   G   R G+GG    DVPLLLSR+PFLNASLKALKV+QKG MHRSRA   A + + VQV
Sbjct:  522 ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHSTGVVGGGGLAASGRGGRMGLGG----DVPLLLSREPFLNASLKALKVQQKGPMHRSRATVSAGQDSAVQV 647
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55085.12910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K212_9PHAE1.650e-5778.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK2_ECTSI9.050e-4573.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55085contigH-elongata_contig55085:719..2838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size791
Cds size789
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55085.12910.1prot_H-elongata_contig55085.12910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55085 719..2838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.4350097-CDS-H-elongata_contig55085:718..11231622930897.4350097-CDS-H-elongata_contig55085:718..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 719..1123 -
1691679616.2128506-CDS-H-elongata_contig55085:718..11231691679616.2128506-CDS-H-elongata_contig55085:718..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 719..1123 -
1622930897.452082-CDS-H-elongata_contig55085:1673..17421622930897.452082-CDS-H-elongata_contig55085:1673..1742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 1674..1742 -
1691679616.221259-CDS-H-elongata_contig55085:1673..17421691679616.221259-CDS-H-elongata_contig55085:1673..1742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 1674..1742 -
1622930897.4693053-CDS-H-elongata_contig55085:1980..22061622930897.4693053-CDS-H-elongata_contig55085:1980..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 1981..2206 -
1691679616.2295156-CDS-H-elongata_contig55085:1980..22061691679616.2295156-CDS-H-elongata_contig55085:1980..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 1981..2206 -
1622930897.4853432-CDS-H-elongata_contig55085:2749..28381622930897.4853432-CDS-H-elongata_contig55085:2749..2838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 2750..2838 -
1691679616.2385027-CDS-H-elongata_contig55085:2749..28381691679616.2385027-CDS-H-elongata_contig55085:2749..2838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55085 2750..2838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55085.12910.1

>prot_H-elongata_contig55085.12910.1 ID=prot_H-elongata_contig55085.12910.1|Name=mRNA_H-elongata_contig55085.12910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp
ADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPHLSLLTFRGQMAVRGLF
EFLLEACGSSATGGAGSGMVTRGSARSGVGGARAGDVPLLLSRQPFLNAS
LKALKVRQKGTMHRSRANTGAKEATDVQVLELVGHVLPSAIADLAHSMAS
ACTSSPTDSAGSGPDSARAASQLGGVNNSGDQGREGEEKIEERGETPALA
TEAPTQGPVCSTGQGSRVPQVEIAGGIAGDTTKKEEWLFRAIGTVDGETK
YLNAGFHAVEAGV
back to top

mRNA from alignment at H-elongata_contig55085:719..2838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55085.12910.1 ID=mRNA_H-elongata_contig55085.12910.1|Name=mRNA_H-elongata_contig55085.12910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2120bp|location=Sequence derived from alignment at H-elongata_contig55085:719..2838- (Himanthalia elongata Himel1 dioecious)
GCCGACGAGGATGTGCTAGAGGAGTGGAAGGCGATGGACGCAACGGGGAA
TGCGAAGCCAGGGGCGGTGTACGCCAACGAGGAGGATAGGTGTGAAGTGC
CCCTGTGGTCGCGCACGTTCACATTAAAAGTTTGAATGTAATTTCGTTCG
CTTGTACTAATTGCCCGCCAATCGCGCGCGCCTTCCGCCGAGGAGCATAC
TTGGGGGACTTGACCCCTCAGATCACATGCCACGGTCTCGATTTAGCGTG
TGTGGGATCGTGTGTCGAATCTATGGAGCAAGGCGTTAAACGCCATGTTT
TTGTCTCTACGCACACATAAAAATCCAACCCTTCCTCTTGCGGTGTCGAT
AGGTTAGTCGCATGCGTCTTTTCTCCAAGCGCAGACCTCGTTGCAACGAG
ACCCTTCAGGTCCCATGGTACGGTCTGAATCTTGCGCCTAAAACCAGCAA
TCAGCAACCTGAAGCTCTACAAAGTCATCGCAACTCCAACCGCTGTTTGT
GAATATCGGCGGATGTTGCCATCTTCCGGAAGCAATCCGGAGACAAGCAC
CATCTCGTGGAGCCCTTGGCTATCTCCGGCGACCCTTTCTTTGTTCTGCT
GCCCTGCTTCCGCATTGTTTTGCGTCCTCCAGGAGCCGACCACATCTCTC
CCTACTCACGTTCCGCGGACAAATGGCGGTACGCGGTCTGTTTGAATTTC
TTCTTGAGGCGTGCGGGTCATCCGCCACCGGCGGGGCGGGGTCGGGAATG
GTGACGCGAGGTAGCGCGAGGAGCGGCGTAGGTGGGGCAAGGGCAGGGGA
CGTCCCTCTGCTGCTTTCTCGACAGCCATTCCTCAACGCATCGCTTAAAG
CTCTCAAGGTACGGTTGCTTGTTGAATGGTACTGAAGGCGCTCCATCCAC
TTAGTGCCCGGCATGCCTGATAAACGTTACGATAAGAGTGTGTATCGCTG
ACCGGGTGTGGTTTACGGTGTTTTCGTGATTATTTGCACCCAAACCCGCT
CCCACTAAACTTGAAAGCGTCCCCGGCGTGTCGCTTCTTACGTTGTCCCT
GATGTCTTACGCGTGCACCGTTACCGACGGTGCGGCGTTGTACCAGGTGC
GGCAAAAGGGGACCATGCACCGGTCAAGGGCCAACACGGGTGCCAAGGAG
GCTACGGACGTCCAGGTGAACCTTAGGATTTCGTGGTTGATCGATCGACT
CTCACGTCATATTTTTGGCAGATGCCTCCAACGTTGTGTACCGCAGTGTA
CTTACGCAAAAAATCTCTAAATGATTTGGACGCAAGATAGTCAACGGGTT
GACGATCAATTAATGCGTGTAAAAGTGTGTGTGTATGTGTGTGTGTGTGT
GTGTGTTTGCGTACCGTAAACGATAGTGGCCCCGACGCGCGGTTGCCCGC
ACGCCTAAAGCTCGGGGTCTCCACCGGGTTGACGACGATGAAGATATTCG
TAACTTTTTCTGGTGGAGGGGTGCCAGGGTATAGCGCATTCATGAACTCT
GTACTAAGAAATCATGTGCCCTTATATAGAAAATGATCGTTCGAAATATA
GGATATATTCGCCTGACAGGTCCGCATCACGTGATATTGACCCTCCCGAA
GGCTCTGGCCTTGTTATCAGCATAGCTTTGTTGGGGGGAGGGTATCCTCC
CCCCCTCCCCCGGTCGTCATGCCTCATCCCCATACAACGAAATGCTGCAT
ACACATAAAACGCAGGTTCTAGAATTGGTCGGTCACGTCCTACCGTCGGC
TATCGCAGACCTCGCGCATTCCATGGCTTCGGCTTGCACGTCCTCTCCGA
CCGATTCGGCGGGAAGTGGCCCGGACAGTGCCCGGGCAGCAAGCCAGCTC
GGTGGCGTCAACAACAGCGGCGATCAAGGGCGAGAGGGGGAAGAAAAAAT
CGAAGAACGCGGAGAAACCCCGGCCTTGGCAACGGAAGCACCGACGCAAG
GACCAGTGTGTAGTACGGGGCAGGGTTCACGGGTGCCGCAAGTAGAAATC
GCGGGAGGGATCGCCGGGGATACCACGAAAAAAGAGGAGTGGCTATTTAG
AGCAATCGGTACCGTGGACGGCGAAACGAAATATTTAAATGCTGGCTTTC
ACGCCGTGGAAGCGGGGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig55085:719..2838-

>mRNA_H-elongata_contig55085.12910.1 ID=mRNA_H-elongata_contig55085.12910.1|Name=mRNA_H-elongata_contig55085.12910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at H-elongata_contig55085:719..2838- (Himanthalia elongata Himel1 dioecious)
GCCGACGAGGATGTGCTAGAGGAGTGGAAGGCGATGGACGCAACGGGGAA
TGCGAAGCCAGGGGCGGTGTACGCCAACGAGGAGGATAGGCCGACGAGGA
TGTGCTAGAGGAGTGGAAGGCGATGGACGCAACGGGGAATGCGAAGCCAG
GGGCGGTGTACGCCAACGAGGAGGATAGGAGCCGACCACATCTCTCCCTA
CTCACGTTCCGCGGACAAATGGCGGTACGCGGTCTGTTTGAATTTCTTCT
TGAGGCGTGCGGGTCATCCGCCACCGGCGGGGCGGGGTCGGGAATGGTGA
CGCGAGGTAGCGCGAGGAGCGGCGTAGGTGGGGCAAGGGCAGGGGACGTC
CCTCTGCTGCTTTCTCGACAGCCATTCCTCAACGCATCGCTTAAAGCTCT
CAAGGAGCCGACCACATCTCTCCCTACTCACGTTCCGCGGACAAATGGCG
GTACGCGGTCTGTTTGAATTTCTTCTTGAGGCGTGCGGGTCATCCGCCAC
CGGCGGGGCGGGGTCGGGAATGGTGACGCGAGGTAGCGCGAGGAGCGGCG
TAGGTGGGGCAAGGGCAGGGGACGTCCCTCTGCTGCTTTCTCGACAGCCA
TTCCTCAACGCATCGCTTAAAGCTCTCAAGGTGCGGCAAAAGGGGACCAT
GCACCGGTCAAGGGCCAACACGGGTGCCAAGGAGGCTACGGACGTCCAGG
TGCGGCAAAAGGGGACCATGCACCGGTCAAGGGCCAACACGGGTGCCAAG
GAGGCTACGGACGTCCAGGTTCTAGAATTGGTCGGTCACGTCCTACCGTC
GGCTATCGCAGACCTCGCGCATTCCATGGCTTCGGCTTGCACGTCCTCTC
CGACCGATTCGGCGGGAAGTGGCCCGGACAGTGCCCGGGCAGCAAGCCAG
CTCGGTGGCGTCAACAACAGCGGCGATCAAGGGCGAGAGGGGGAAGAAAA
AATCGAAGAACGCGGAGAAACCCCGGCCTTGGCAACGGAAGCACCGACGC
AAGGACCAGTGTGTAGTACGGGGCAGGGTTCACGGGTGCCGCAAGTAGAA
ATCGCGGGAGGGATCGCCGGGGATACCACGAAAAAAGAGGAGTGGCTATT
TAGAGCAATCGGTACCGTGGACGGCGAAACGAAATATTTAAATGCTGGCT
TTCACGCCGTGGAAGCGGGGGTGGTTCTAGAATTGGTCGGTCACGTCCTA
CCGTCGGCTATCGCAGACCTCGCGCATTCCATGGCTTCGGCTTGCACGTC
CTCTCCGACCGATTCGGCGGGAAGTGGCCCGGACAGTGCCCGGGCAGCAA
GCCAGCTCGGTGGCGTCAACAACAGCGGCGATCAAGGGCGAGAGGGGGAA
GAAAAAATCGAAGAACGCGGAGAAACCCCGGCCTTGGCAACGGAAGCACC
GACGCAAGGACCAGTGTGTAGTACGGGGCAGGGTTCACGGGTGCCGCAAG
TAGAAATCGCGGGAGGGATCGCCGGGGATACCACGAAAAAAGAGGAGTGG
CTATTTAGAGCAATCGGTACCGTGGACGGCGAAACGAAATATTTAAATGC
TGGCTTTCACGCCGTGGAAGCGGGGGTG
back to top