mRNA_H-elongata_contig55070.12908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55070.12908.1
Unique NamemRNA_H-elongata_contig55070.12908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 RSKMVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE 144
            RSK+VA AYPD RDGV TPAH LGDDSLLIKYINPRL AFA L  EE
Sbjct:  750 RSKVVATAYPDGRDGVQTPAHTLGDDSLLIKYINPRLFAFATLCPEE 796
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BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: A0A835YVX9_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   13 MVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE 144
            +VA AYP  R+ + +PA  LGDDSLL+KY+NP L A A + K++
Sbjct:  724 VVATAYPLRREAIQSPAQVLGDDSLLLKYLNPHLAAVATMPKQQ 767
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BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: B5Y4Q1_PHATC (ER membrane protein complex subunit 1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4Q1_PHATC)

HSP 1 Score: 50.1 bits (118), Expect = 9.380e-6
Identity = 20/48 (41.67%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 PRSKMVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE 144
            P  +++++AYP   + + +P++ALGD SLL+KY+NP L+A    +KE+
Sbjct:  536 PGEEILSVAYPSREEAIQSPSNALGDFSLLLKYVNPHLMAVVTKTKED 583
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BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: A0A7S3LAD7_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAD7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 PRSKMVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRL 114
            P  K+V +AYPD  + + +P  ALGD SLL+KYINP L
Sbjct:  451 PEEKIVTVAYPDREEVIQSPCSALGDQSLLLKYINPHL 488
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJ92_ECTSI5.470e-1580.85ER membrane protein complex subunit 1 n=2 Tax=Ecto... [more]
A0A835YVX9_9STRA2.680e-652.27ER membrane protein complex subunit 1 n=1 Tax=Trib... [more]
B5Y4Q1_PHATC9.380e-641.67ER membrane protein complex subunit 1 n=1 Tax=Phae... [more]
A0A7S3LAD7_9STRA1.750e-555.26ER membrane protein complex subunit 1 n=1 Tax=Amph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55070contigH-elongata_contig55070:3542..3685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue5.9e-11
Seed eggNOG ortholog2880.D7FJ92
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130
KEGG ModuleM00135
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG2103@1,KOG2103@2759
EC1.2.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.2114089-UTR-H-elongata_contig55070:3541..35531622930897.2114089-UTR-H-elongata_contig55070:3541..3553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55070 3542..3553 +
1691679616.1608407-UTR-H-elongata_contig55070:3541..35531691679616.1608407-UTR-H-elongata_contig55070:3541..3553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55070 3542..3553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.2810922-CDS-H-elongata_contig55070:3553..36851622930897.2810922-CDS-H-elongata_contig55070:3553..3685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55070 3554..3685 +
1691679616.173866-CDS-H-elongata_contig55070:3553..36851691679616.173866-CDS-H-elongata_contig55070:3553..3685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55070 3554..3685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55070.12908.1prot_H-elongata_contig55070.12908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55070 3554..3685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55070.12908.1

>prot_H-elongata_contig55070.12908.1 ID=prot_H-elongata_contig55070.12908.1|Name=mRNA_H-elongata_contig55070.12908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE
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mRNA from alignment at H-elongata_contig55070:3542..3685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55070.12908.1 ID=mRNA_H-elongata_contig55070.12908.1|Name=mRNA_H-elongata_contig55070.12908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig55070:3542..3685+ (Himanthalia elongata Himel1 dioecious)
CCTAGGTCCAAGATGGTAGCGATTGCATATCCCGACATGAGAGACGGGGT
GCCCACGCCGGCCCACGCGCTAGGAGACGATTCGCTGCTCATCAAGTACA
TCAACCCGAGGCTGCTCGCGTTCGCGATGCTCTCCAAAGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig55070:3542..3685+

>mRNA_H-elongata_contig55070.12908.1 ID=mRNA_H-elongata_contig55070.12908.1|Name=mRNA_H-elongata_contig55070.12908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig55070:3542..3685+ (Himanthalia elongata Himel1 dioecious)
ATGGTAGCGATTGCATATCCCGACATGAGAGACGGGGTGCCCACGCCGGC
CCACGCGCTAGGAGACGATTCGCTGCTCATCAAGTACATCAACCCGAGGC
TGCTCGCGTTCGCGATGCTCTCCAAAGAGGAGATGGTAGCGATTGCATAT
CCCGACATGAGAGACGGGGTGCCCACGCCGGCCCACGCGCTAGGAGACGA
TTCGCTGCTCATCAAGTACATCAACCCGAGGCTGCTCGCGTTCGCGATGC
TCTCCAAAGAGGAG
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