mRNA_H-elongata_contig54990.12902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54990.12902.1
Unique NamemRNA_H-elongata_contig54990.12902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54990.12902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54990contigH-elongata_contig54990:1296..2795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930896.6227238-CDS-H-elongata_contig54990:1295..14201622930896.6227238-CDS-H-elongata_contig54990:1295..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54990 1296..1420 +
1691679615.9719043-CDS-H-elongata_contig54990:1295..14201691679615.9719043-CDS-H-elongata_contig54990:1295..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54990 1296..1420 +
1622930896.6392927-CDS-H-elongata_contig54990:2680..27951622930896.6392927-CDS-H-elongata_contig54990:2680..2795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54990 2681..2795 +
1691679615.9813461-CDS-H-elongata_contig54990:2680..27951691679615.9813461-CDS-H-elongata_contig54990:2680..2795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54990 2681..2795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54990.12902.1prot_H-elongata_contig54990.12902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54990 1296..2795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54990.12902.1

>prot_H-elongata_contig54990.12902.1 ID=prot_H-elongata_contig54990.12902.1|Name=mRNA_H-elongata_contig54990.12902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
STERRLYTRKHLRRSHRSTTSPDLKPVHCWTKTRYSDGDGISAKVRNEEP
TQWAAATCHGRDHGQEQGGGLESRHGAGRV
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mRNA from alignment at H-elongata_contig54990:1296..2795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54990.12902.1 ID=mRNA_H-elongata_contig54990.12902.1|Name=mRNA_H-elongata_contig54990.12902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-elongata_contig54990:1296..2795+ (Himanthalia elongata Himel1 dioecious)
TCGACGGAGAGGCGATTGTACACACGCAAACATCTTAGGCGATCGCACCG
GTCTACCACTTCTCCGGACCTGAAACCCGTTCATTGCTGGACAAAAACTC
GTTACTCGGACGGTGACGGCATAAGGTGGGCCTCGGCACTGATGCGACCC
GGGTGTGAAGGAGTCGAGCGCTTGGAGCTCCACCGCGATTTTCCATCAGA
TCGAACATTGAAGGCAGCGTTGTTTGCTGCCTACTCGGCAGTCTCCGAGA
TCCGCTCTGCCGGCCCTTGTAGACGACTAAGCGTGGTTCACATTGTACTT
GTGGGATTCGCTTGTAGAAGCTCTTGCGAACCGTGGCAGTGTCTTACACG
AGATGGCGATCGTCTGAACGACTAGGCTCAGACCGAAAGTCAAGTACGAG
TAGCGACCTTGCTTCCCGCTGACGTACCGACAGCAGGGCTTGACCCGGCT
GCCGTACGAGAAACACCCCAGCCATCGTTGAGCTCAAACAGTGTTCAGTT
TTGCGAGGATCCTTAAAACTTGAGAGGAAATTAGTTCCTTTGATCTTGCG
TATCGTGGGCCTCGTGTTCTTGCCGTCCCAGCCGAGGTCTCATTCTGTCC
CACCGTCGAAATGCGGCACCCAATTCAGCAGGAGCAAATTTGTCTGCCCT
ACCCACGCTGAGGACAGACCGTCCGTTGCTCGATCCGTAACATTCCTTGA
GTGCAAGCCCGCAGCGCTCCCTAGCGTAAACCGGAAAGGCAGTCCGAGAA
AAAGCTTCTTCGGCTCAGCCAGACGCGTGGTCAATTTGCTGCGGCCCGCT
GGACTACCCTATGGGGTGATCGCAGTCCTTGAACCTTTTGTGGGATAAGC
GGCTCGCCCGCTCTTCACCCCAAGGCCTCTTCTGAACTCGAGTTCTCACG
AACGGACCACCGAGGCTCACCCCGAAAAACGAAGAAGGGCCTCACGGGAT
CGACAGCGAGGCTGACAAGCAGCACAACCATGGTTCCCGCTTGCCTAGGC
TTTCGTCGCAAAGGCGTCCATCGCCCGAGCCTACGCGGTGTGCGCTTTAC
GAAAAGAATGTCGGAGGACCGCACGATCATCAAACCTCCGAAACACCCAA
ACATCAACCAACTCAACTCCAGTATCTGTCTGCTGCCCGTAAACTACGAT
TTTTTCGAGGTAAACTTTTCTTCTCAGAACTCGTCTGAAAGCATTAAATC
AAGACAGAAGGAAGTCGTGCAGAACGCTCAACGTTACCACCCATCAACCG
CAGAGAGGCTATTATTAATAGTTCAGTTTTGAATTAAAAACTAATCAATA
ATCCAGCTCTCGAAAATAAGCACAGGTGCATCTCCGTCCGTCCTCCTTTT
CAATTCGTTCGTCCCTCGTCACTTTTCGAATACAGCGCGAAGGTACGCAA
CGAGGAGCCAACACAGTGGGCAGCAGCTACCTGTCATGGTAGAGATCATG
GACAGGAGCAGGGAGGTGGATTGGAGTCCCGACATGGAGCTGGAAGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig54990:1296..2795+

>mRNA_H-elongata_contig54990.12902.1 ID=mRNA_H-elongata_contig54990.12902.1|Name=mRNA_H-elongata_contig54990.12902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig54990:1296..2795+ (Himanthalia elongata Himel1 dioecious)
TCGACGGAGAGGCGATTGTACACACGCAAACATCTTAGGCGATCGCACCG
GTCTACCACTTCTCCGGACCTGAAACCCGTTCATTGCTGGACAAAAACTC
GTTACTCGGACGGTGACGGCATAAGTCGACGGAGAGGCGATTGTACACAC
GCAAACATCTTAGGCGATCGCACCGGTCTACCACTTCTCCGGACCTGAAA
CCCGTTCATTGCTGGACAAAAACTCGTTACTCGGACGGTGACGGCATAAG
CGCGAAGGTACGCAACGAGGAGCCAACACAGTGGGCAGCAGCTACCTGTC
ATGGTAGAGATCATGGACAGGAGCAGGGAGGTGGATTGGAGTCCCGACAT
GGAGCTGGAAGGGTGCGCGAAGGTACGCAACGAGGAGCCAACACAGTGGG
CAGCAGCTACCTGTCATGGTAGAGATCATGGACAGGAGCAGGGAGGTGGA
TTGGAGTCCCGACATGGAGCTGGAAGGGTG
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