mRNA_H-elongata_contig54974.12898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54974.12898.1
Unique NamemRNA_H-elongata_contig54974.12898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KQF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.080e-29
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:   76 DADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            DAD+   + DRRSVSG  V  G  A SW S TQKCVT +T EA+ VAL D  KE +F R +   + PQ+   C+ +F  N+GA+++A +P + S SKHIDV+ HF++GLV   EI  +HV + YQ
Sbjct:   20 DADFARKAADRRSVSGGIVTCGGDAVSWFSRTQKCVTLSTIEADCVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEGNQGAIQLAQNPISNSNSKHIDVRHHFLKGLVERKEISVIHVPSPYQ 144          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.430e-28
Identity = 62/147 (42.18%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   16 TKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            T ++ L+F RD  + +   V  DAD+ + + DRRSVSG  V +      W S TQKCV+ +T EAE++A+ D  KEA+F   +L  L+P +    +D+  DNEGA+ +A +P ++SRSKHIDV+ HF++ L   G I   HV +K Q
Sbjct:   86 TAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 232          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.100e-28
Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            K T ++ L++ +D  + +   V  DAD+ + + DRRSVSG  V +     SW + TQKCV+ +T EAE++A+ D  KEA+F   +L  L+P      +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L   G I   HV +K Q
Sbjct:  116 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQ 264          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.100e-28
Identity = 66/147 (44.90%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   16 TKYIDLRFVRDP--GLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            T +  + F R    G  L    DAD+ + + DRRSVSG  V  G  A SW SITQKCVT +T EAE+VAL D  KE +F R +   + PQ+   C+ IF DN+GA+++A +P + S SKHIDV+ HF++ LV   E   +HV +  Q
Sbjct:  121 TSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQ 267          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.610e-28
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            K T ++ L++ +D  + +   V  DAD+ + + DRRSVSG  V++     SW S TQKCV+ +T EAE++A+ D  KEA F   +L  L+P      +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L   G I   HV +K Q
Sbjct:  211 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 359          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.050e-27
Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = 1
Query:   10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            K T ++ L++ +D  + +   V  DAD+ + + DRRSVSG  V++     SW S TQKCV+ +T EAE++A+ D  KEA+F   +L  L+P      +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L   G I   HV +K Q
Sbjct:  551 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 699          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.150e-27
Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = 1
Query:   10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            K T ++ L++ +D  + +   V  DAD+ + + DRRSVSG  V++     SW S TQKCV+ +T EAE++A+ D  KEA+F   +L  L+P      +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L   G I   HV +K Q
Sbjct: 1106 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 1254          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.360e-27
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = 1
Query:   10 KCTKYIDLRFVRDPGLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            K T+ + + + R  GL L V  DA Y A + DRRSVSG+A  +G T  S  S TQ  V+ ++ EAE++A  +  KEA+F RAVL  + P+ +G  + +  DN+GAM +  +P +++RSKHIDV++HFI+GL  SGEI    V T  Q
Sbjct:  210 KETRDLGITYKRGSGLGLEVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQ 355          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5L6Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.840e-27
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   52 GLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            G  L    DAD+ + +  RRS+SG  V  G  A SW S TQKCVT +T EAE+VAL D  KE +F R +   + PQ+  +C+ IF DN+GA+++A +P + S SKHIDV+ HF++ LV   EI  +HV + YQ
Sbjct:  748 GFSLQGYADADFASKAAGRRSISGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMLCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQ 880          
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.250e-27
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   16 TKYIDLRFVRDPGLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
            TK + + +VR  GL L V  D+ Y  ++ DRRS +G+AV +G T     + TQ     +T EAE++A  +  KEA+F R VL  + P+ +G  + +  DNEGA+ +  +P +++RSKHIDV+FHFI+ L  +G+I A +V T+ Q
Sbjct:   42 TKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQ 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQF2_9PHAE3.080e-2948.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE1.430e-2842.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTP8_9PHAE2.100e-2841.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ5_9PHAE2.100e-2844.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE7.610e-2842.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE1.050e-2742.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JH25_9PHAE1.150e-2742.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.360e-2744.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Y3_9PHAE3.840e-2746.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KR64_9PHAE4.250e-2740.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54974contigH-elongata_contig54974:1964..2413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score91.7
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog5111.M1W6X0
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs21T6K@147550,38V3R@33154,3G6JD@34397,3Q0A2@4751,3RQRT@4890,3TV77@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelClavicipitaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.9262953-CDS-H-elongata_contig54974:1963..24131622930895.9262953-CDS-H-elongata_contig54974:1963..2413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54974 1964..2413 +
1691679615.7221324-CDS-H-elongata_contig54974:1963..24131691679615.7221324-CDS-H-elongata_contig54974:1963..2413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54974 1964..2413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54974.12898.1prot_H-elongata_contig54974.12898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54974 1964..2413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54974.12898.1

>prot_H-elongata_contig54974.12898.1 ID=prot_H-elongata_contig54974.12898.1|Name=mRNA_H-elongata_contig54974.12898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
RVRKCTKYIDLRFVRDPGLRLFVLPDADYTAASNDRRSVSGVAVVLGDTA
RSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVD
IFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ
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mRNA from alignment at H-elongata_contig54974:1964..2413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54974.12898.1 ID=mRNA_H-elongata_contig54974.12898.1|Name=mRNA_H-elongata_contig54974.12898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig54974:1964..2413+ (Himanthalia elongata Himel1 dioecious)
CGCGTACGTAAATGCACGAAATATATAGATTTAAGGTTCGTGCGTGATCC TGGTCTGAGACTTTTTGTGCTTCCAGATGCTGATTACACGGCGGCATCGA ATGATCGAAGGTCCGTGTCAGGTGTAGCAGTAGTTCTGGGTGACACAGCA AGAAGCTGGAAAAGTATTACGCAGAAATGTGTGACGACTGCAACCTGTGA GGCTGAGTGGGTCGCCCTTTGTGATGCAACAAAAGAGGCGATATTTGAGA GAGCGGTTTTGGTTTCTCTGCAGCCGCAACTGGCCGGGATGTGCGTTGAT ATCTTTGGTGACAATGAGGGTGCGATGGAGATCGCAAACAGTCCAAGCAA TGCGTCGAGAAGCAAGCATATTGATGTGAAATTCCACTTCATTCAAGGAC TCGTGTGTTCAGGAGAAATTCGAGCCCTTCATGTAGGAACGAAATATCAA
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Coding sequence (CDS) from alignment at H-elongata_contig54974:1964..2413+

>mRNA_H-elongata_contig54974.12898.1 ID=mRNA_H-elongata_contig54974.12898.1|Name=mRNA_H-elongata_contig54974.12898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig54974:1964..2413+ (Himanthalia elongata Himel1 dioecious)
CGCGTACGTAAATGCACGAAATATATAGATTTAAGGTTCGTGCGTGATCC
TGGTCTGAGACTTTTTGTGCTTCCAGATGCTGATTACACGGCGGCATCGA
ATGATCGAAGGTCCGTGTCAGGTGTAGCAGTAGTTCTGGGTGACACAGCA
AGAAGCTGGAAAAGTATTACGCAGAAATGTGTGACGACTGCAACCTGTGA
GGCTGAGTGGGTCGCCCTTTGTGATGCAACAAAAGAGGCGATATTTGAGA
GAGCGGTTTTGGTTTCTCTGCAGCCGCAACTGGCCGGGATGTGCGTTGAT
ATCTTTGGTGACAATGAGGGTGCGATGGAGATCGCAAACAGTCCAAGCAA
TGCGTCGAGAAGCAAGCATATTGATGTGAAATTCCACTTCATTCAAGGAC
TCGTGTGTTCAGGAGAAATTCGAGCCCTTCATGTAGGAACGAAATATCAA
CGCGTACGTAAATGCACGAAATATATAGATTTAAGGTTCGTGCGTGATCC
TGGTCTGAGACTTTTTGTGCTTCCAGATGCTGATTACACGGCGGCATCGA
ATGATCGAAGGTCCGTGTCAGGTGTAGCAGTAGTTCTGGGTGACACAGCA
AGAAGCTGGAAAAGTATTACGCAGAAATGTGTGACGACTGCAACCTGTGA
GGCTGAGTGGGTCGCCCTTTGTGATGCAACAAAAGAGGCGATATTTGAGA
GAGCGGTTTTGGTTTCTCTGCAGCCGCAACTGGCCGGGATGTGCGTTGAT
ATCTTTGGTGACAATGAGGGTGCGATGGAGATCGCAAACAGTCCAAGCAA
TGCGTCGAGAAGCAAGCATATTGATGTGAAATTCCACTTCATTCAAGGAC
TCGTGTGTTCAGGAGAAATTCGAGCCCTTCATGTAGGAACGAAATATCAA
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