mRNA_H-elongata_contig54970.12897.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54970.12897.1
Unique NamemRNA_H-elongata_contig54970.12897.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54970.12897.1 vs. uniprot
Match: D7G949_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G949_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.550e-33
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    7 ESAEDEAAMEYLKWELHGKFMAFPGEHYHNLLSCLASEIYHNRYPVEHGVDVLHAVMREAGPGASQ 204
            E+ ED AAMEYLKWELHGKFMAFPGEHYHNLL+ LASEIYHNRYPVEHG+D+LH VMR+AGP A Q
Sbjct:   51 ETPEDLAAMEYLKWELHGKFMAFPGEHYHNLLANLASEIYHNRYPVEHGIDILHGVMRDAGPEALQ 116
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BLAST of mRNA_H-elongata_contig54970.12897.1 vs. uniprot
Match: A0A6H5JHB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.090e-30
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    7 ESAEDEAAMEYLKWELHGKFMAFPGEHYHNLLSCLASEIYHNRYPVEHGVDVLHAVMREAGPGASQ 204
            E+ ED AAMEYLKWELHGKFMAFPGEHYHNLL+ LASEIYHNRYPVEHG+D+LH VMR+AGP A Q
Sbjct:  419 ETPEDLAAMEYLKWELHGKFMAFPGEHYHNLLANLASEIYHNRYPVEHGIDILHGVMRDAGPEALQ 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54970.12897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G949_ECTSI3.550e-3383.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHB5_9PHAE4.090e-3083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54970contigH-elongata_contig54970:42..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011260.1
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.8392766-CDS-H-elongata_contig54970:41..1871622930895.8392766-CDS-H-elongata_contig54970:41..187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54970 42..187 -
1691679615.6972659-CDS-H-elongata_contig54970:41..1871691679615.6972659-CDS-H-elongata_contig54970:41..187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54970 42..187 -
1622930895.8655019-CDS-H-elongata_contig54970:595..6531622930895.8655019-CDS-H-elongata_contig54970:595..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54970 596..653 -
1691679615.711369-CDS-H-elongata_contig54970:595..6531691679615.711369-CDS-H-elongata_contig54970:595..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54970 596..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54970.12897.1prot_H-elongata_contig54970.12897.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54970 42..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54970.12897.1

>prot_H-elongata_contig54970.12897.1 ID=prot_H-elongata_contig54970.12897.1|Name=mRNA_H-elongata_contig54970.12897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MPESAEDEAAMEYLKWELHGKFMAFPGEHYHNLLSCLASEIYHNRYPVEH
GVDVLHAVMREAGPGASQ
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mRNA from alignment at H-elongata_contig54970:42..653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54970.12897.1 ID=mRNA_H-elongata_contig54970.12897.1|Name=mRNA_H-elongata_contig54970.12897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at H-elongata_contig54970:42..653- (Himanthalia elongata Himel1 dioecious)
ATGCCTGAATCGGCCGAGGATGAGGCCGCCATGGAGTACCTCAAGTGGGA
GCTGCATGGTGAGAAGAAGCCTGGTGACATCGAAGCCGCGGTTTGGCTTG
TCATTACGATGCGTGCCGCGCTTCACTGTTGTTTGTCAGCTCTCTATTCT
TCGATTGTGATGAAACCCAGGAGCAAAACATGTATATCGCTGTTTCGAAA
TACGTACTCTTGCTGGGTGTCCTGAGCAATAACCTTCGATCTTGGATGCC
TATGAACGAAAGCAATAACCTTCGGTCTCGGCTGGGCTCGACCATTCGCA
GCCAAATCCGAGCGCCCGTTTGTCTCATGATTATGACGCCATTAGCCTCA
AGTATCGAGAGCCATTGCTCTGGAACGATGTTTTGCGCCTTTGGTATGGA
TAGCTTCCAAGAGCGGCTGTATATTTCTTAAATATCGGTACCCTCTTCAA
CCCCATCCCGTCAAAGGCAAGTTCATGGCATTCCCGGGTGAGCACTACCA
CAATCTGCTTTCATGCCTCGCGTCCGAGATCTACCACAATCGTTATCCTG
TGGAGCACGGCGTGGACGTCCTCCACGCAGTGATGCGCGAAGCGGGGCCG
GGCGCGTCACAG
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Coding sequence (CDS) from alignment at H-elongata_contig54970:42..653-

>mRNA_H-elongata_contig54970.12897.1 ID=mRNA_H-elongata_contig54970.12897.1|Name=mRNA_H-elongata_contig54970.12897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig54970:42..653- (Himanthalia elongata Himel1 dioecious)
ATGCCTGAATCGGCCGAGGATGAGGCCGCCATGGAGTACCTCAAGTGGGA
GCTGCATGATGCCTGAATCGGCCGAGGATGAGGCCGCCATGGAGTACCTC
AAGTGGGAGCTGCATGGCAAGTTCATGGCATTCCCGGGTGAGCACTACCA
CAATCTGCTTTCATGCCTCGCGTCCGAGATCTACCACAATCGTTATCCTG
TGGAGCACGGCGTGGACGTCCTCCACGCAGTGATGCGCGAAGCGGGGCCG
GGCGCGTCACAGGCAAGTTCATGGCATTCCCGGGTGAGCACTACCACAAT
CTGCTTTCATGCCTCGCGTCCGAGATCTACCACAATCGTTATCCTGTGGA
GCACGGCGTGGACGTCCTCCACGCAGTGATGCGCGAAGCGGGGCCGGGCG
CGTCACAG
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