mRNA_H-elongata_contig54947.12895.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI) HSP 1 Score: 299 bits (765), Expect = 1.080e-98 Identity = 141/227 (62.11%), Postives = 177/227 (77.97%), Query Frame = 1
Query: 1 SGLYFGVWIIQRLWCNLGLPDNCQLASAPLDVLTDLVILFTFSLAQAWWCELLEKNRWEDSLKKPLFIAIIPLTAIIVSAMGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTLEGTLLISGPKSDMPKPENNLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSNRLRFAGC 681
+ LYF WI+QRLWC+LGLPD+C LA PLDVLTDLV+LFTFSLAQA+WCE+L +R+E+ K P +I +T II+SA+G I GLE WD + G+DFEFS +RSTI++ GLIA V V+WHFARA++TL G L+SG P P+ +LH Y+ SR+V++ W ILFT F+I++D+GFDYRGALLAW+LSL+AVFP PVS WL V TGIFLQGIG+NRLRF GC
Sbjct: 15 AALYFLAWILQRLWCHLGLPDHCDLAMRPLDVLTDLVVLFTFSLAQAYWCEILLDDRFEELKKAPWIFGVILITPIIISALGRIGGLERWDKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVEP-PKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGANRLRFLGC 240
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI) HSP 1 Score: 155 bits (391), Expect = 6.030e-42 Identity = 86/218 (39.45%), Postives = 126/218 (57.80%), Query Frame = 1
Query: 7 LYFGVWIIQRLWCNLGLPDNCQLASAPLDVLTDLVILFTFSLAQAWWCELLEKNRWEDSLKKPLFIAIIPLTAIIVSAMGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTLEGTLLISGPKSDMPKPENNLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSN 660
+Y W++ RL C GLP +C L PL+VLT L++L FSLAQAW+CE++E+ R+ D K F ++ A+ +S + L E + + + I+I+ LI V + HFA A+ L G LISG + +L + Y SRM+++ + IL+ F + D+G+ Y+ LLAWVLSL A F +S+FWLAVTTG+FLQGIG+
Sbjct: 48 MYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRN---SLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQ 262
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI) HSP 1 Score: 152 bits (383), Expect = 2.680e-40 Identity = 85/223 (38.12%), Postives = 126/223 (56.50%), Query Frame = 1
Query: 4 GLYFGVWIIQRLWCNLGLPDNCQLASAPLDVLTDLVILFTFSLAQAWWCELLEKNRWEDSLKKPLFIAIIPLTAIIVSAMGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTLEGTLLISGPKSDMPKPENNLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSNRLRF 672
GL W+ QRL C+ LP +C L S L+VLTDL+ L F L QAW+CE+LE+ R+ ++ F +I + +IVSA+ + + + D+ S + + ++ + V+ V++HFA A+ TL G +SG + E NLH Y SR ++V +A+L+ F + +G LLAWVLSL A F S+ WLA+ TG+F+QG GS RLRF
Sbjct: 44 GLLLLCWLFQRLMCHFNLPPHCDLPSDALEVLTDLLALLVFGLTQAWFCEVLEERRFRHLTREAYFGIVIIVIGLIVSAIETTDWFQDMRF-NDNSDWRDSHIVMAVVLITFVLVI--VAYHFAEAWRTLPGAYYVSGNINLDIVIEENLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFGSYRLRF 263
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE) HSP 1 Score: 122 bits (305), Expect = 3.260e-29 Identity = 74/228 (32.46%), Postives = 124/228 (54.39%), Query Frame = 1
Query: 4 GLYFGVWIIQRLWCNLGLPDNCQLASAPLDVLTDLVILFTFSLAQAWWCELLEKNRWEDSLKKPLFIAIIPLTAIIVSAMGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTLEGTLL----ISGPKSDMPKPEN--NLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSNRLR 669
G Y ++ + C +G+P+NC A+ +DVLT+L LF F+ A+ C +L R+ KK F ++ + + SA+ + G E PG D + +I +L L+A+VF ++H+ A+ L G L +SG ++ P P N + Y S V++++ +LF+ F + + +DY LLAW++SL+A F +S+ WL +TTG+FLQG+G+ R
Sbjct: 52 GFYIFLYALMAASCEVGVPENCTRATDAMDVLTELPFLFVFA---AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFE--GLHDPGGDLSPAEAALSIILLILVALVF--AYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFR 272
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.210e-25 Identity = 75/229 (32.75%), Postives = 114/229 (49.78%), Query Frame = 1
Query: 10 YFGVWIIQRLWCNLGLPDNCQLASAPLDVLTDLVILFTFSLAQA---WWCELLEKNRWEDSLKKPLFIAIIPLTAIIVSAMGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTLEGTLLISGPKSD-----MPKPENNLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSNRLRF 672
Y W++ ++ C L P N + A PLDVLT+L L F+L QA + C+ L+ R+ K+ ++ + I SA+ G H ED + V +L +IAV +HF A+ TL G ++ISG S P N A Y + +++ + L F+ + ++Y LLAWV+SL+A+F P S+ WL VTTG FLQG+G+ +F
Sbjct: 20 YVLCWLLMQVSCELEPPGNYRWACQPLDVLTELPFLLAFALGQATTAFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVD---THEIEDGMTTAVNVVSTLL-VIAVGLAFVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQF 244
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 4.720e-15 Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 283 PGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTLEGTLL----ISGPKSDMPKPEN--NLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSNRLR 669
PG + + +I +L L+A+VF ++H+ A+ L G L +SG ++ P P N + Y S V++V+ +LF+ F + + +DY LLAW++SL+A F +S+ WL +TTG+FLQG+G+ R
Sbjct: 12 PGGELSPAEAALSIILLVLVALVF--AYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFR 144
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Match: A0A7S3XT19_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT19_HETAK) HSP 1 Score: 73.2 bits (178), Expect = 2.430e-11 Identity = 54/222 (24.32%), Postives = 99/222 (44.59%), Query Frame = 1
Query: 19 VWIIQRLWCNLGLPDNCQLASAPLDVLTDLVILFTFSLAQAWWCELLEKNR-WED-SLKKPLFIAIIPLTAIIVSAMGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWH--FARAYMTLEGTLLISGPKSDMPKPENNLHATYTGSRMVLVVWAILFTCFLITDDNGFDYRGALLAWVLSLLAVFPVPVSLFWLAVTTGIFLQGIGSNRLRF 672
+WII R+ C G P++C S+P + D+ IL + QAW+ E+LE+ R W SL++ F ++ T + S + + +E F SG + + ++++H +A+ ++ L+ Y R+ ++++ +++ + LAW +SL A F P SL LAV+TG+ +QG+G+ F
Sbjct: 61 LWIITRVTCACGAPNDCVSESSPSTTMNDIQILLLYGFTQAWFVEILERRRFWHVFSLQRWYFWVVLAGTPPVFSVISDLPVME----FSISSSFSLSGGMVAVLVAAGTGFSLWLAFHILYAKHVYAMDNFLV------------------YVLGRVGVLLFFLVYMMVAYNEXXXXXXXXXWLAWAVSLFASFNHPASLLLLAVSTGVMVQGLGAYHTDF 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54947.12895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54947.12895.1 >prot_H-elongata_contig54947.12895.1 ID=prot_H-elongata_contig54947.12895.1|Name=mRNA_H-elongata_contig54947.12895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MGHIRGLEPWDYRHPGEDFEFSGVRSTIYILGLIAVVFFVSWHFARAYMTback to top mRNA from alignment at H-elongata_contig54947:277..2421+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54947.12895.1 ID=mRNA_H-elongata_contig54947.12895.1|Name=mRNA_H-elongata_contig54947.12895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2145bp|location=Sequence derived from alignment at H-elongata_contig54947:277..2421+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54947:277..2421+ >mRNA_H-elongata_contig54947.12895.1 ID=mRNA_H-elongata_contig54947.12895.1|Name=mRNA_H-elongata_contig54947.12895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig54947:277..2421+ (Himanthalia elongata Himel1 dioecious)back to top |