mRNA_H-elongata_contig54945.12894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54945.12894.1
Unique NamemRNA_H-elongata_contig54945.12894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: D7FJV0_ECTSI (Ribosome production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.370e-40
Identity = 98/149 (65.77%), Postives = 111/149 (74.50%), Query Frame = 1 
Query:  457 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDGVEDGAADPGGDDIRNGDASTAGGATTDEGMEEGG--ATAAARAKRNTRRKNKERKIL 897
            ++P V L EMGP+LDL IRRTSFAA DLWKASVKKPRVAETRK KNVSAN+ GDK+GRIHLGRQDLSSMKVRRVKALRTV K  ++     G  +GA D GG D  +G  ++  G+T           ATAAARAKR TRRKNKERK+L
Sbjct:  208 KIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPRVAETRKTKNVSANQFGDKLGRIHLGRQDLSSMKVRRVKALRTVGKGAKE-----GEGEGAEDGGGGDPMDGITTSGTGSTXXXXXXXXXXXATAAARAKRGTRRKNKERKVL 351
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A7S2UZD7_9STRA (Ribosome production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.760e-20
Identity = 47/78 (60.26%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:  457 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR 690
            ++P+V L   GP+LDLV+RR+   + DLW+A+ K+P+    +KVKNV+ NE+GDK+GRIHLGRQDLSSMKV++VKALR
Sbjct:  211 KIPRVQLESTGPSLDLVLRRSKLPSPDLWRAACKQPKQLRPKKVKNVTKNEMGDKVGRIHLGRQDLSSMKVKKVKALR 288
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A835ZC15_9STRA (Ribosome production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.800e-20
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  457 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDGVEDGAA 750
            +VP + L  MGP  DLV+RR  FAATDLWK + +KP+  + +KVKNV++N   + +GRIHLGRQDLSSM VRRVKALR+  KR+R +   +G  +GAA
Sbjct:  209 KVPHIQLERMGPHADLVLRRVKFAATDLWKVATRKPKQLKPKKVKNVTSNTF-ETVGRIHLGRQDLSSMNVRRVKALRSGGKRKRGE---EGAGEGAA 302
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A367JKW8_RHIST (Ribosome production factor 2 homolog n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JKW8_RHIST)

HSP 1 Score: 91.7 bits (226), Expect = 9.140e-17
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:  457 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR---------TVSKRQRDDSD 723
            + P+V L EMGP+ DL IRRT+    DLWKA+ K P+  + +KVKN+  +E+GDK GRIHLG+QDLS ++ R++K L+         T+SK+Q+ D +
Sbjct:  206 KTPRVELEEMGPSYDLKIRRTTLPKPDLWKAACKVPKEVKPKKVKNIEVDEMGDKYGRIHLGKQDLSKIQTRKMKGLKKRSADDDEETLSKKQKVDQE 303
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A7S1CB60_9STRA (Ribosome production factor 2 homolog (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB60_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.970e-16
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:  466 KVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDG 732
            K +LS+MGP  DLV RRT  A+ DL+KA++K PR A+  KVKNV+ N LGDK+GRIH+  QDL +M+V+R+KALR+   R+R  S  DG
Sbjct:  212 KATLSDMGPHFDLVCRRTQEASADLFKAAMKMPREAKAHKVKNVTRNALGDKIGRIHMKTQDLDNMQVKRIKALRS---RKRASSAGDG 297
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A1V9ZW29_9STRA (Ribosome production factor 2 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW29_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.230e-16
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:  436 FTLSEMWQVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANEL-GDKMGRIHLGRQDLSSMKVRRVKALR-TVSKRQRDDSDVD 729
            FTLS     P+V L EMGP  DL  RR  FA+ DL KA++KKP+    +K+KNV+ +EL GDK+GRIH+ RQD+ SM VRRVKALR T ++ + DD +++
Sbjct:  228 FTLSNDTH-PRVELDEMGPRFDLSFRRHKFASADLMKAALKKPKELAPKKIKNVTRDELTGDKIGRIHVDRQDIYSMNVRRVKALRKTPAQLKTDDEEME 326
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A8K1FC18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC18_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 4.940e-16
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:  463 PKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANEL-GDKMGRIHLGRQDLSSMKVRRVKALRTV-SKRQRDDSDVDGVED 741
            P+V L EMGP  DL  RR   A+ DL KA+ KKP+    +K+KN+S +EL GDK+GRIHLG+QD+ SM+ RRVKALR   S+ + D +DVD  +D
Sbjct:  243 PRVELEEMGPRFDLHFRRQKLASADLMKAATKKPKGLAPKKIKNISRDELTGDKLGRIHLGKQDIYSMQSRRVKALRKAPSELKNDAADVDMEDD 337
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A7S1T9P2_9RHOD (Ribosome production factor 2 homolog n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9P2_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 5.410e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:  460 VPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPR-VAETRKVKNVSANE-LGDKMGRIHLGRQDLSSMKVRRVKALR 690
            +P+V LSE GP+ DLV+RRT FA+ DLWKA+ +KPR  A  RK KNV+ +  LGD  GRIH+G+QDL+ + +RR++ALR
Sbjct:   60 LPRVELSECGPSFDLVLRRTQFASEDLWKAATRKPRDPAVPRKTKNVTWDSPLGDTQGRIHVGKQDLTVLALRRIRALR 138
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A0L0HLF0_SPIPD (Ribosome production factor 2 homolog n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HLF0_SPIPD)

HSP 1 Score: 89.4 bits (220), Expect = 5.820e-16
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  457 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR 690
            ++P+V L EMGPA DLVIRR   A TDLWKA+ + P+  + +K KN+  NELGDKMGRIH+ +QDL  ++ R++K L+
Sbjct:  207 RLPRVELEEMGPACDLVIRRCRTADTDLWKAATRVPKELKPQKEKNIERNELGDKMGRIHMHKQDLGKLQTRKMKGLK 284
[Close]
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A507EKT6_9FUNG (Ribosome production factor 2 homolog n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EKT6_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 2.010e-15
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  457 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR 690
            ++P+V L EMGPA DLVIRR   A TDLWKAS + P+  + +K KNV  NELGDKMGRIH+ +QDL  ++ R++K L+
Sbjct:  845 RLPRVELEEMGPACDLVIRRCRTADTDLWKASTRVPKELKPQKEKNVERNELGDKMGRIHMHKQDLGKLQTRKMKGLK 922
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJV0_ECTSI1.370e-4065.77Ribosome production factor 2 homolog n=2 Tax=Ectoc... [more]
A0A7S2UZD7_9STRA4.760e-2060.26Ribosome production factor 2 homolog n=1 Tax=Fibro... [more]
A0A835ZC15_9STRA6.800e-2056.12Ribosome production factor 2 homolog n=1 Tax=Tribo... [more]
A0A367JKW8_RHIST9.140e-1746.94Ribosome production factor 2 homolog n=1 Tax=Rhizo... [more]
A0A7S1CB60_9STRA2.970e-1656.18Ribosome production factor 2 homolog (Fragment) n=... [more]
A0A1V9ZW29_9STRA4.230e-1653.00Ribosome production factor 2 homolog n=1 Tax=Thrau... [more]
A0A8K1FC18_PYTOL4.940e-1653.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1T9P2_9RHOD5.410e-1656.96Ribosome production factor 2 homolog n=1 Tax=Comps... [more]
A0A0L0HLF0_SPIPD5.820e-1653.85Ribosome production factor 2 homolog n=1 Tax=Spize... [more]
A0A507EKT6_9FUNG2.010e-1556.41Ribosome production factor 2 homolog n=1 Tax=Spize... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54945contigH-elongata_contig54945:1475..3777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue8.7e-38
Seed eggNOG ortholog2880.D7FJV0
KEGG koko:K14847
GOsGO:0000027,GO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004611,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008964,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016829,GO:0016830,GO:0016831,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0099402,GO:1901360,GO:1901363
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG5106@1,KOG3031@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size1611
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54945.12894.1prot_H-elongata_contig54945.12894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54945 1925..3066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.3151042-UTR-H-elongata_contig54945:1474..19241622930895.3151042-UTR-H-elongata_contig54945:1474..1924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54945 1475..1924 +
1691679615.3891175-UTR-H-elongata_contig54945:1474..19241691679615.3891175-UTR-H-elongata_contig54945:1474..1924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54945 1475..1924 +
1622930895.3796744-UTR-H-elongata_contig54945:3066..37771622930895.3796744-UTR-H-elongata_contig54945:3066..3777Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54945 3067..3777 +
1691679615.4433079-UTR-H-elongata_contig54945:3066..37771691679615.4433079-UTR-H-elongata_contig54945:3066..3777Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54945 3067..3777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.328183-CDS-H-elongata_contig54945:1924..20431622930895.328183-CDS-H-elongata_contig54945:1924..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54945 1925..2043 +
1691679615.4078293-CDS-H-elongata_contig54945:1924..20431691679615.4078293-CDS-H-elongata_contig54945:1924..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54945 1925..2043 +
1622930895.3409817-CDS-H-elongata_contig54945:2414..25111622930895.3409817-CDS-H-elongata_contig54945:2414..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54945 2415..2511 +
1691679615.417679-CDS-H-elongata_contig54945:2414..25111691679615.417679-CDS-H-elongata_contig54945:2414..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54945 2415..2511 +
1622930895.3608897-CDS-H-elongata_contig54945:2832..30661622930895.3608897-CDS-H-elongata_contig54945:2832..3066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54945 2833..3066 +
1691679615.4273715-CDS-H-elongata_contig54945:2832..30661691679615.4273715-CDS-H-elongata_contig54945:2832..3066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54945 2833..3066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54945.12894.1

>prot_H-elongata_contig54945.12894.1 ID=prot_H-elongata_contig54945.12894.1|Name=mRNA_H-elongata_contig54945.12894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MWQVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVS
ANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDGVEDGAA
DPGGDDIRNGDASTAGGATTDEGMEEGGATAAARAKRNTRRKNKERKIL*
back to top

mRNA from alignment at H-elongata_contig54945:1475..3777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54945.12894.1 ID=mRNA_H-elongata_contig54945.12894.1|Name=mRNA_H-elongata_contig54945.12894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2303bp|location=Sequence derived from alignment at H-elongata_contig54945:1475..3777+ (Himanthalia elongata Himel1 dioecious)
TGCTAAAACGCCCCCGGTTTGTAGAGGGGACATGTTAACTTTTCCCCCTC
CTTGGGATAAAACCTATCCGTCCCTTTTTTGTTGTAATCAGATATCATGT
ATGAAGCGCTAAGACCGGGGATACTACGATTGCATTCCCGGACCCCGGAA
AGGGACGAAAAAAAAAAAAAAAAGCGGGGACAATGATGTTCCATCTCCTC
CCCAAAATATTTGGATTGGTCGCCTAGCAGCCAAAATGAGGGTAAAACCT
GCCGAGGCGTTTTCCTCTCTCTCTCTCTCTCCTAGTTAGCCCGCTCCCCG
TGTGGTGCCATCATCATAATGAAATAGAGAGATCACTATAGTAAAAATAG
AGAGATAACCCAAATACTCAACAAGCCCCAGACGCGCAATTCAAGAGCGG
TAGACATACGCATCTCAGAGCACTCGCGTGGGTACTTTACCCTGTCTGAG
ATGTGGCAGGTTCCCAAGGTATCGCTGTCTGAGATGGGGCCGGCGCTGGA
TCTCGTGATCCGCCGCACAAGCTTCGCCGCCACCGACCTGTGGAAGGCGT
CTGTCAAGAAACCCCGAGTGTGAGTCGAATGGAGAATGGAGAATCGAATA
GACACGTTCGTGAAGAAAAGAAAAGACTGTGATACTTACTTAACACGACC
CGAAGCGCTGGGTTGACGATTTGATTAGTGGGACTCCTCGCGGAAGGAAT
CTACGAACATGATCGATCAAAACCCCCCCCTCTTCGCCCTCGCGAGGTTA
TGACGGAATAGGGTAGAGCGACGGCGACGAGTTGAGCCGCCGTGGGCCAG
GCAGCGTCGCTAGTTTCGATTTAACCGAGGGATGTTTTTATTATTTGAAA
ACCGCGAGAACCCCGAAATTGTGTTGCCGAGCGAATCATGTCCCCCGATC
CCGTCCGAAATGCGTCCACCCACCCCGTGCGTTGGGGCAGGGCGGAGACG
AGGAAGGTCAAGAATGTCTCCGCGAATGAGCTGGGAGACAAGATGGGACG
GATCCACTTGGGCCGGCAAGACCTCTCCAGCATGAAGGTGAGCGGATGGG
GGCTCTTCTATTAAAATGGGAGCTTGCCGTTTCGCCGCCTAAAGAGGCTT
TCCCCATAAAACAGCGGCGTGTGTGCCGGGCACGCTTTGAGCCGAGCCGG
TTGGATGACGACCCGAAATGTACCCGTAGTGTTCGTTTGGAGAGAGTCGT
GTTAGCTGCCCACGATCTCTGCCGACGCCTTTCTACCTTTGCCTGAACTG
TTCTGCCTCACAAGCTCGGAACATTCATCGATTGATCCTTCGCCCCCTCC
CGTTTTTTTTGGCGCCATATCGACGTCCCTGGGGGGAAAACGCCTCCTGA
TCGAGCAGGTCCGCCGTGTGAAAGCCCTCCGCACCGTTTCGAAGCGACAA
CGCGACGATAGTGATGTTGATGGGGTGGAGGATGGGGCGGCGGACCCGGG
CGGGGATGATATTCGGAACGGCGATGCCTCCACAGCAGGGGGGGCGACAA
CAGACGAAGGGATGGAGGAAGGGGGTGCGACGGCAGCCGCGAGGGCCAAG
CGTAACACTAGGAGAAAAAATAAGGAGAGAAAGATCCTGTGAATGCACTG
CGCGCCGTTTTCTCTTTGGCATGCGTCGGGGATTCTCGGGATGGGGATTG
GACCTCTGCAGGTCGTAGCTTGTGCCACGTTCGTTCGCTTTTGAGGAAGG
GGAGGGGAGGATAGCGCATCCGCCCCGCGGGGAAATGGAGTTGAAAATGT
CTTTAGCCGGACGTGTGCTCACGGTTTGTGGTTGGGTGCGAGGGATGCCT
CAATAATATGAAGGATTTTTGGGGGCAGAGCAATGCAGCCAGTCGCAGCC
GACGAGTCCCTGCGGCGGCTAAAATTGGTCATTCTCCATAGTTCTCCCTC
GTCCGAGGCTTTCTCTGCATTAAACGTTGTCCCCGATTAGAGGTCATGCG
GAGGCATCGTGTTAAAGTCCTCTACCGATGACCCCCGCTCGCCGAATGCG
ATAATTTCTTCCTTGAGACGATTACATTTTTTTTCCCAAGCGTGTTTTTT
TTGTTTGTTAAAATTGTTTCAAATGTCTTTTTACTCAAAATATTCCTAAG
AAAGTTTGGATGTTCGGAGGGTTGGAATAAATAAGTTCAAGGTTTTTGAA
ATAAAAATGACGGGAAAATTATTTTTCCCTGTTCAGCTGACCACGAGCAG
AAGGCAACTAAATCTGGTTGATCTTATTCTGCTAAATGTGTGGCCAACAA
CACCAACAACAACCCTCCATTCCGTTGGCAAACGTGTGAGGGTCATCGAT
CAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54945:1475..3777+

>mRNA_H-elongata_contig54945.12894.1 ID=mRNA_H-elongata_contig54945.12894.1|Name=mRNA_H-elongata_contig54945.12894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig54945:1475..3777+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCAGGTTCCCAAGGTATCGCTGTCTGAGATGGGGCCGGCGCTGGA
TCTCGTGATCCGCCGCACAAGCTTCGCCGCCACCGACCTGTGGAAGGCGT
CTGTCAAGAAACCCCGAGTATGTGGCAGGTTCCCAAGGTATCGCTGTCTG
AGATGGGGCCGGCGCTGGATCTCGTGATCCGCCGCACAAGCTTCGCCGCC
ACCGACCTGTGGAAGGCGTCTGTCAAGAAACCCCGAGTGGCGGAGACGAG
GAAGGTCAAGAATGTCTCCGCGAATGAGCTGGGAGACAAGATGGGACGGA
TCCACTTGGGCCGGCAAGACCTCTCCAGCATGAAGGGCGGAGACGAGGAA
GGTCAAGAATGTCTCCGCGAATGAGCTGGGAGACAAGATGGGACGGATCC
ACTTGGGCCGGCAAGACCTCTCCAGCATGAAGGTCCGCCGTGTGAAAGCC
CTCCGCACCGTTTCGAAGCGACAACGCGACGATAGTGATGTTGATGGGGT
GGAGGATGGGGCGGCGGACCCGGGCGGGGATGATATTCGGAACGGCGATG
CCTCCACAGCAGGGGGGGCGACAACAGACGAAGGGATGGAGGAAGGGGGT
GCGACGGCAGCCGCGAGGGCCAAGCGTAACACTAGGAGAAAAAATAAGGA
GAGAAAGATCCTGTGAGTCCGCCGTGTGAAAGCCCTCCGCACCGTTTCGA
AGCGACAACGCGACGATAGTGATGTTGATGGGGTGGAGGATGGGGCGGCG
GACCCGGGCGGGGATGATATTCGGAACGGCGATGCCTCCACAGCAGGGGG
GGCGACAACAGACGAAGGGATGGAGGAAGGGGGTGCGACGGCAGCCGCGA
GGGCCAAGCGTAACACTAGGAGAAAAAATAAGGAGAGAAAGATCCTGTGA
back to top