mRNA_H-elongata_contig116388.1289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116388.1289.1
Unique NamemRNA_H-elongata_contig116388.1289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.520e-34
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 VPDPHPSVLHDLARRCVVSGLQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            +PDPHPSVLHDLARRC+VSGLQRK    ACNPLALC+G+LPSWC+ LP EFP+LFSLETRL+L +K+AFGMARAVAHVQ
Sbjct: 1446 LPDPHPSVLHDLARRCIVSGLQRK----ACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ 1520
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: D7FHF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.750e-24
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   67 RKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            R  S+QACNPLALC+G+LPSWC+ LP EFP+LFSLETRL+L +K+AFGMARAVAHVQ
Sbjct:    3 RGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ 59
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A5K1H120_9MAGN (HECT domain-containing protein (Fragment) n=16 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1H120_9MAGN)

HSP 1 Score: 63.2 bits (152), Expect = 8.130e-10
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   55 SGLQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            S L  K++RQ  +PLALCSG+LPSWC +L +  P LF  ETR   +  +AFG++RA+  +Q
Sbjct:  283 SKLTPKLARQIQDPLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQ 343
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A6I9RAC6_ELAGV (HECT-type E3 ubiquitin transferase n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RAC6_ELAGV)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-9
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   49 VVSGLQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            + S L  K++RQ  +PLALCSG+LPSWC ++ +  P LF  ETR   +  +AFG++RA+  +Q
Sbjct: 1385 ISSKLTPKLARQIQDPLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGLSRALHRLQ 1447
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A6A3C850_HIBSY (HECT-type E3 ubiquitin transferase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C850_HIBSY)

HSP 1 Score: 62.4 bits (150), Expect = 1.580e-9
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   61 LQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            L  K++RQ  + LALCSG+LPSWC +L +  P LF  ETR   +  +AFG++RA+ H+Q
Sbjct: 1396 LTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYHLQ 1454
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: UPI0009E5ADF2 (E3 ubiquitin-protein ligase UPL3 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E5ADF2)

HSP 1 Score: 61.6 bits (148), Expect = 2.950e-9
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   34 LARRCVVSGLQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            L +  + + L  K+ RQ  +PLALCSG+LPSWC +L +  P LF  ETR   +  +AFG++RA+  +Q
Sbjct: 1332 LPQEYINNKLTPKLVRQIRDPLALCSGSLPSWCYQLTKACPFLFPFETRRQFFYSTAFGISRALHRLQ 1399
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BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: UPI0009F3690D (E3 ubiquitin-protein ligase UPL3-like isoform X1 n=5 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F3690D)

HSP 1 Score: 61.6 bits (148), Expect = 2.950e-9
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   55 SGLQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            S L  K+ RQ  + LALCSG+LPSWC +L +  P LF  ETR   +  +AFG++RA+ H+Q
Sbjct: 1371 SKLTPKLVRQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRHFFYTTAFGLSRALHHLQ 1431
[Close]
BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A2G9GHT1_9LAMI (HECT-type E3 ubiquitin transferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GHT1_9LAMI)

HSP 1 Score: 60.5 bits (145), Expect = 7.530e-9
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   61 LQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            L  K++RQ  + LALCSGALPSWC +L +  P LF  ETR   +  +AFG++RA+  +Q
Sbjct: 1377 LTPKLARQIQDALALCSGALPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQ 1435
[Close]
BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A022RNE4_ERYGU (HECT-type E3 ubiquitin transferase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RNE4_ERYGU)

HSP 1 Score: 60.5 bits (145), Expect = 7.530e-9
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   61 LQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            L  K++RQ  + LALCSGALPSWC +L +  P LF  ETR   +  +AFG++RA+  +Q
Sbjct: 1385 LTPKLARQIQDALALCSGALPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALNRLQ 1443
[Close]
BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Match: A0A7J9G223_9ROSI (HECT domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9G223_9ROSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-8
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   61 LQRKVSRQACNPLALCSGALPSWCLRLPEEFPTLFSLETRLALYKKSAFGMARAVAHVQ 237
            L  K++RQ  + L LCSG LPSWC +L +  P LF  ETR   +  +AFG++RA+ H+Q
Sbjct:  642 LTPKLARQMQDALVLCSGNLPSWCYQLTKSCPFLFPFETRRQYFYSTAFGLSRALYHLQ 700
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116388.1289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K2P5_9PHAE1.520e-3479.75HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHF2_ECTSI2.750e-2477.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5K1H120_9MAGN8.130e-1049.18HECT domain-containing protein (Fragment) n=16 Tax... [more]
A0A6I9RAC6_ELAGV1.160e-946.03HECT-type E3 ubiquitin transferase n=3 Tax=Arecace... [more]
A0A6A3C850_HIBSY1.580e-949.15HECT-type E3 ubiquitin transferase n=1 Tax=Hibiscu... [more]
UPI0009E5ADF22.950e-944.12E3 ubiquitin-protein ligase UPL3 n=1 Tax=Phalaenop... [more]
UPI0009F3690D2.950e-949.18E3 ubiquitin-protein ligase UPL3-like isoform X1 n... [more]
A0A2G9GHT1_9LAMI7.530e-949.15HECT-type E3 ubiquitin transferase n=1 Tax=Handroa... [more]
A0A022RNE4_ERYGU7.530e-949.15HECT-type E3 ubiquitin transferase n=1 Tax=Erythra... [more]
A0A7J9G223_9ROSI1.020e-847.46HECT domain-containing protein n=2 Tax=Gossypium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116388contigH-elongata_contig116388:684..1767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size237
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116388.1289.1prot_H-elongata_contig116388.1289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116388 712..1702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.4339054-UTR-H-elongata_contig116388:683..7111622929676.4339054-UTR-H-elongata_contig116388:683..711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116388 684..711 +
1691679115.5819225-UTR-H-elongata_contig116388:683..7111691679115.5819225-UTR-H-elongata_contig116388:683..711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116388 684..711 +
1622929676.484872-UTR-H-elongata_contig116388:1702..17671622929676.484872-UTR-H-elongata_contig116388:1702..1767Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116388 1703..1767 +
1691679115.6102757-UTR-H-elongata_contig116388:1702..17671691679115.6102757-UTR-H-elongata_contig116388:1702..1767Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116388 1703..1767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.4506345-CDS-H-elongata_contig116388:711..7671622929676.4506345-CDS-H-elongata_contig116388:711..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116388 712..767 +
1691679115.591858-CDS-H-elongata_contig116388:711..7671691679115.591858-CDS-H-elongata_contig116388:711..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116388 712..767 +
1622929676.4686875-CDS-H-elongata_contig116388:1614..17021622929676.4686875-CDS-H-elongata_contig116388:1614..1702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116388 1615..1702 +
1691679115.6030698-CDS-H-elongata_contig116388:1614..17021691679115.6030698-CDS-H-elongata_contig116388:1614..1702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116388 1615..1702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116388.1289.1

>prot_H-elongata_contig116388.1289.1 ID=prot_H-elongata_contig116388.1289.1|Name=mRNA_H-elongata_contig116388.1289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MTLRGGAWFRGCSGRCPVRRATLWRCARGHFPLGAFGFPRSSLPFFR*
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mRNA from alignment at H-elongata_contig116388:684..1767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116388.1289.1 ID=mRNA_H-elongata_contig116388.1289.1|Name=mRNA_H-elongata_contig116388.1289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1084bp|location=Sequence derived from alignment at H-elongata_contig116388:684..1767+ (Himanthalia elongata Himel1 dioecious)
GTTCCAGACCCGCATCCCTCGGTTTTGCATGACCTTGCGAGGCGGTGCGT
GGTTTCGGGGCTGCAGCGGAAGGTGTCCCGTCAGGTGAGGACCGACCAGG
GCTTACTAGCTCATCTTACCTCGCGAGACGAAAATTTCTTTTTGCCTCTC
AGGATTCTATGCCTTGGCCTCTTCGCCTCCCCCTGCGGTGTACCCTATCC
GTGTATTTTTTGTAGAGCCAAATAACGTCTAGCCTTTGTCCAATCAGAGC
CTGATTTAAATTTAAATCGTCTGGAATTAAATTTGTTGTAACCCCGTTAA
TACCCGCCCTTATATGTTCGTTCCTCTTCAGTGTATCCTAATCGGGTTTT
TTTAGAGAGATGATGGCACTTCTTCGTTCGATCCCCTGCGGTGTACCCCA
TCAGTGTCTTTTTTGTAGAGTTATTTTGGCACTTTCTTCGCTCGTTCCCC
TGTGGTGTACCCTATCCGTATATTTTTTTAAGATATATTGGGCACTTCTC
CGTTGCCCGTTTATTCGGCGCGATCTTTCTACTTTTATCGCTTCATTGCC
ACAACTCGCTGTACCTTATAGCAGATGTCATGTCAGTTAACATGAGAACG
CTGTATCTTATCAAGATATATATTTTTACGGGTACCTTTTTCTTGCTACA
AAACACTTTTTAGCAGTTCTTGCCTTTTTTCGGTAGGCCCGCCAAACTTT
CCATCACTCATTGTAGTATAATAGCTACTATGGCAGCACTTTACCTTATT
TAGTAAATTCGTGACCCTTTTCCTTCAAAACACAACCCGAGACACATATT
TTGAGGGAGATGGGAACCGCCCTCTCCCGACCACTTTAACCAACTTACCT
TTTGTGTGTACTTAAACCAACTTTGTACCTTTTGTGTGTACTTAAACCAA
CTTTGTACCTTTTGTGTGTATGTGTGTCCAGGCGTGCAACCCTCTGGCGC
TGTGCTCGGGGGCACTTCCCTCTTGGTGCCTTCGGCTTCCCGAGGAGTTC
CCTACCCTTTTTTCGCTAGAAACGCGGCTCGCGCTCTACAAGAAGAGTGC
GTTTGGGATGGCCAGGGCCGTGGCGCATGTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig116388:684..1767+

>mRNA_H-elongata_contig116388.1289.1 ID=mRNA_H-elongata_contig116388.1289.1|Name=mRNA_H-elongata_contig116388.1289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig116388:684..1767+ (Himanthalia elongata Himel1 dioecious)
ATGACCTTGCGAGGCGGTGCGTGGTTTCGGGGCTGCAGCGGAAGGTGTCC
CGTCAGATGACCTTGCGAGGCGGTGCGTGGTTTCGGGGCTGCAGCGGAAG
GTGTCCCGTCAGGCGTGCAACCCTCTGGCGCTGTGCTCGGGGGCACTTCC
CTCTTGGTGCCTTCGGCTTCCCGAGGAGTTCCCTACCCTTTTTTCGCTAG
GCGTGCAACCCTCTGGCGCTGTGCTCGGGGGCACTTCCCTCTTGGTGCCT
TCGGCTTCCCGAGGAGTTCCCTACCCTTTTTTCGCTAG
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