mRNA_H-elongata_contig54903.12888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54903.12888.1
Unique NamemRNA_H-elongata_contig54903.12888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.640e-49
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLT 318
            SYWL M+RTNYETGQKEQMGKCL+GVQIWP+EKAE QP G GRNDPNS PFLPPP GRLRFSLNPFVMGSELFGPKIC +IAC      +I+  VYFS FFN LLT
Sbjct: 2117 SYWLNMERTNYETGQKEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLT 2222          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A6H5L724_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L724_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.870e-41
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   43 QKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLT 318
            ++EQMGKCL+GVQIWP+EKAE QP G GRNDPNS PFLPPP GRLRFSLNPFVMGSELFGPKIC +IAC      +I+  VYFS FFN LLT
Sbjct:  226 EEEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLT 317          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S2AZE1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZE1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.210e-31
Identity = 54/109 (49.54%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLVT 327
            S WL MD+ ++ TG + +MGK  +G+ I P   A   PAG+GR DPN+NP+LPPP+GRL+FSLNPFVMGSEL GPK+C ++ C       I+  ++ S  FNF++ ++T
Sbjct:   35 SEWLPMDKLDHATGIRTKMGKLNIGIHIVPKTIASSIPAGLGRTDPNANPYLPPPSGRLKFSLNPFVMGSELCGPKLCAQLTCCLICTAIILLMIFCSPVFNFVIAILT 143          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S2G2Q7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.040e-30
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    7 WLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIAC 249
            WL MD+ ++E+G + QMGK  +G+++ P   A+++PAG GRNDPNSNP LPPP GR++FSLNPFVMG+EL GPK+C ++ C
Sbjct:    3 WLTMDKLDHESGVRNQMGKMCIGLKLLPKSIADKEPAGFGRNDPNSNPTLPPPVGRMKFSLNPFVMGAELCGPKLCAQLTC 83          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK)

HSP 1 Score: 109 bits (273), Expect = 2.570e-28
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
            S W+ +++T++ TG K+QMGK  + + I+P ++A  QP G GR+ PN NP+ PPP GRL+FSLNPF M S+L GPKI C + C        + ++Y S F N ++ LV
Sbjct:   47 SKWMTLEKTDHNTGTKQQMGKVCLSISIYPKDQANAQPVGFGRSAPNMNPYCPPPVGRLKFSLNPFSMLSQLLGPKITCYVICCLFLVLFALLSIYCSPFLNIVIALV 154          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S2D049_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D049_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.350e-27
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
            S WL MD+ N+ETG ++ MGK  + +QI P+  AE  PAG G+ DPNSNPFLPPP GR++FSLNPFVMGSEL GPK+C   AC       ++  ++ +   N +L ++
Sbjct: 1740 SEWLNMDKFNHETGIRDAMGKVCIRLQIVPLIIAEVTPAGFGQTDPNSNPFLPPPQGRMKFSLNPFVMGSELCGPKLCAYFACCLLCIVIVLLLIFCNPLLNLVLAII 1847          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A067CD61_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD61_SAPPC)

HSP 1 Score: 110 bits (276), Expect = 5.610e-26
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIAC 249
            S W+KM+R N ETGQKE MG   + +++ P++KA+ Q  G GR+DPN++PFLPPP GRL+FS+NPF + +EL GPKIC R+ C
Sbjct: 1652 STWIKMERLNRETGQKEAMGALCISMELVPIDKAKVQTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMC 1734          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A1V9ZTL2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTL2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.780e-26
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIAC 249
            S W+KM+R N ETGQKE MG   + +++ PVEKA+    G GR+DPN++PFLPPP GRL+FS+NPF + +EL GPKIC R+ C
Sbjct: 3446 STWIKMERLNRETGQKEAMGAVCISMELVPVEKAKVMTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMC 3528          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A482S6F5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6F5_9ARCH)

HSP 1 Score: 100 bits (248), Expect = 2.760e-25
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   55 MGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
            MG     VQIWP EKA   P G  R  PN+NPFLPPP GR++FSLNPFVMGSEL GP +C +I C        +  ++F  FFN ++ L+
Sbjct:    1 MGSICYSVQIWPKEKALAMPVGAARTSPNTNPFLPPPVGRMQFSLNPFVMGSELCGPVLCAKIFCCMMCVVFCLLMIFFQPFFNIVINLI 90          
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A6G0WJX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJX2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.620e-25
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
            S W+KM+R N  TG KE MG   + +++ P+EKA+ Q  G GR+DPN+NPFLPPP+GRL+FS+NPF + ++L GPKIC R  C       +V   +   F N L+ ++
Sbjct: 1679 STWIKMERLNRATGVKEPMGAVCISMELVPIEKAKIQSVGFGRSDPNNNPFLPPPSGRLKFSMNPFYVFNQLLGPKICRRFMCCLCCVAVMVAMYFLGPFINILIVML 1786          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF87_ECTSI3.640e-4978.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L724_9PHAE6.870e-4175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AZE1_9STRA2.210e-3149.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2G2Q7_9STRA1.040e-3058.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3XX73_HETAK2.570e-2845.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2D049_9STRA1.350e-2750.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067CD61_SAPPC5.610e-2656.63Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZTL2_9STRA7.780e-2657.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A482S6F5_9ARCH2.760e-2551.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0WJX2_9STRA3.620e-2546.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54903contigH-elongata_contig54903:54..896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.7e-39
Seed eggNOG ortholog2880.D8LF87
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1030@1,KOG1030@2759,KOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54903.12888.1prot_H-elongata_contig54903.12888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54903 69..896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.8082492-UTR-H-elongata_contig54903:53..681622930894.8082492-UTR-H-elongata_contig54903:53..68Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54903 54..68 +
1691679615.2047224-UTR-H-elongata_contig54903:53..681691679615.2047224-UTR-H-elongata_contig54903:53..68Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54903 54..68 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.8218877-CDS-H-elongata_contig54903:68..1011622930894.8218877-CDS-H-elongata_contig54903:68..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54903 69..101 +
1691679615.2169054-CDS-H-elongata_contig54903:68..1011691679615.2169054-CDS-H-elongata_contig54903:68..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54903 69..101 +
1622930894.8376703-CDS-H-elongata_contig54903:605..8961622930894.8376703-CDS-H-elongata_contig54903:605..896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54903 606..896 +
1691679615.225705-CDS-H-elongata_contig54903:605..8961691679615.225705-CDS-H-elongata_contig54903:605..896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54903 606..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54903.12888.1

>prot_H-elongata_contig54903.12888.1 ID=prot_H-elongata_contig54903.12888.1|Name=mRNA_H-elongata_contig54903.12888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPP
TGRLRFSLNPFVMGSELFGPKICCRIACCCCCIFTIVFAVYFSSFFNFLL
TLVTTFF*
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mRNA from alignment at H-elongata_contig54903:54..896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54903.12888.1 ID=mRNA_H-elongata_contig54903.12888.1|Name=mRNA_H-elongata_contig54903.12888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig54903:54..896+ (Himanthalia elongata Himel1 dioecious)
TCTTACTGGCTCAAGATGGATCGCACGAATTACGAAACGGGACAGAAGGT GAGCTGTTTTTTTTAGTTTTAAGTTTAATTGAGATTTCAGTCGCCGCGAA TTGTACGAGTTTTAAGTTTAATTAAGTTTTTTGTTTACTTGTTTTTTTTT TCGTCGCCGCGAACAGGGAGTACATAATACATATTACGGAATACATTATA CATAATGGTATTACATAATACCGTACATACTAGAATTATTTTCTCTGTTC AGCTGACCACGAGCAGAAGGCAACCAAATTCGGATGATCTTACTATACTG TTAAATGTGTGACCAACAACTATTACATGAGTGATGTACTTAGTAAATAT TGTGAGCCTCTCAGCACAGGGCGCGTAGCCATTTCCAGGAGGAGACGGCG ACGACGCGTAACACCTTCCCAAACACGATGTAAGACACTTTAAAGTCCTA AAGCCGTGCTCGGAGCTCGCTCGGGGCGCGACCAGCAACGGCCGTTGGTC CTTACACCGATACACCGTTATGAACAAACCACCAACTGCCTCGATACCGC AGGAGCAAATGGGAAAGTGCCTGGTGGGCGTCCAGATCTGGCCGGTCGAG AAGGCCGAGCAGCAGCCCGCGGGGATCGGCCGGAACGACCCGAACAGCAA CCCTTTCCTGCCTCCGCCCACGGGCCGCCTGCGGTTCAGCCTCAACCCTT TCGTGATGGGGTCAGAGCTGTTCGGGCCCAAGATCTGCTGTCGCATCGCC TGCTGCTGCTGCTGCATCTTCACGATCGTGTTCGCGGTGTACTTTAGCAG TTTCTTCAACTTCCTCCTCACCCTAGTGACAACCTTCTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54903:54..896+

>mRNA_H-elongata_contig54903.12888.1 ID=mRNA_H-elongata_contig54903.12888.1|Name=mRNA_H-elongata_contig54903.12888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig54903:54..896+ (Himanthalia elongata Himel1 dioecious)
ATGGATCGCACGAATTACGAAACGGGACAGAAGATGGATCGCACGAATTA
CGAAACGGGACAGAAGGAGCAAATGGGAAAGTGCCTGGTGGGCGTCCAGA
TCTGGCCGGTCGAGAAGGCCGAGCAGCAGCCCGCGGGGATCGGCCGGAAC
GACCCGAACAGCAACCCTTTCCTGCCTCCGCCCACGGGCCGCCTGCGGTT
CAGCCTCAACCCTTTCGTGATGGGGTCAGAGCTGTTCGGGCCCAAGATCT
GCTGTCGCATCGCCTGCTGCTGCTGCTGCATCTTCACGATCGTGTTCGCG
GTGTACTTTAGCAGTTTCTTCAACTTCCTCCTCACCCTAGTGACAACCTT
CTTTTGAGAGCAAATGGGAAAGTGCCTGGTGGGCGTCCAGATCTGGCCGG
TCGAGAAGGCCGAGCAGCAGCCCGCGGGGATCGGCCGGAACGACCCGAAC
AGCAACCCTTTCCTGCCTCCGCCCACGGGCCGCCTGCGGTTCAGCCTCAA
CCCTTTCGTGATGGGGTCAGAGCTGTTCGGGCCCAAGATCTGCTGTCGCA
TCGCCTGCTGCTGCTGCTGCATCTTCACGATCGTGTTCGCGGTGTACTTT
AGCAGTTTCTTCAACTTCCTCCTCACCCTAGTGACAACCTTCTTTTGA
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