mRNA_H-elongata_contig54903.12888.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI) HSP 1 Score: 177 bits (448), Expect = 3.640e-49 Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLT 318
SYWL M+RTNYETGQKEQMGKCL+GVQIWP+EKAE QP G GRNDPNS PFLPPP GRLRFSLNPFVMGSELFGPKIC +IAC +I+ VYFS FFN LLT
Sbjct: 2117 SYWLNMERTNYETGQKEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLT 2222
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A6H5L724_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L724_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.870e-41 Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1
Query: 43 QKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLT 318
++EQMGKCL+GVQIWP+EKAE QP G GRNDPNS PFLPPP GRLRFSLNPFVMGSELFGPKIC +IAC +I+ VYFS FFN LLT
Sbjct: 226 EEEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLT 317
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S2AZE1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZE1_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.210e-31 Identity = 54/109 (49.54%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLVT 327
S WL MD+ ++ TG + +MGK +G+ I P A PAG+GR DPN+NP+LPPP+GRL+FSLNPFVMGSEL GPK+C ++ C I+ ++ S FNF++ ++T
Sbjct: 35 SEWLPMDKLDHATGIRTKMGKLNIGIHIVPKTIASSIPAGLGRTDPNANPYLPPPSGRLKFSLNPFVMGSELCGPKLCAQLTCCLICTAIILLMIFCSPVFNFVIAILT 143
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S2G2Q7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q7_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.040e-30 Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 1
Query: 7 WLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIAC 249
WL MD+ ++E+G + QMGK +G+++ P A+++PAG GRNDPNSNP LPPP GR++FSLNPFVMG+EL GPK+C ++ C
Sbjct: 3 WLTMDKLDHESGVRNQMGKMCIGLKLLPKSIADKEPAGFGRNDPNSNPTLPPPVGRMKFSLNPFVMGAELCGPKLCAQLTC 83
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK) HSP 1 Score: 109 bits (273), Expect = 2.570e-28 Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
S W+ +++T++ TG K+QMGK + + I+P ++A QP G GR+ PN NP+ PPP GRL+FSLNPF M S+L GPKI C + C + ++Y S F N ++ LV
Sbjct: 47 SKWMTLEKTDHNTGTKQQMGKVCLSISIYPKDQANAQPVGFGRSAPNMNPYCPPPVGRLKFSLNPFSMLSQLLGPKITCYVICCLFLVLFALLSIYCSPFLNIVIALV 154
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A7S2D049_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D049_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.350e-27 Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
S WL MD+ N+ETG ++ MGK + +QI P+ AE PAG G+ DPNSNPFLPPP GR++FSLNPFVMGSEL GPK+C AC ++ ++ + N +L ++
Sbjct: 1740 SEWLNMDKFNHETGIRDAMGKVCIRLQIVPLIIAEVTPAGFGQTDPNSNPFLPPPQGRMKFSLNPFVMGSELCGPKLCAYFACCLLCIVIVLLLIFCNPLLNLVLAII 1847
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A067CD61_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD61_SAPPC) HSP 1 Score: 110 bits (276), Expect = 5.610e-26 Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIAC 249
S W+KM+R N ETGQKE MG + +++ P++KA+ Q G GR+DPN++PFLPPP GRL+FS+NPF + +EL GPKIC R+ C
Sbjct: 1652 STWIKMERLNRETGQKEAMGALCISMELVPIDKAKVQTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMC 1734
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A1V9ZTL2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTL2_9STRA) HSP 1 Score: 110 bits (275), Expect = 7.780e-26 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIAC 249
S W+KM+R N ETGQKE MG + +++ PVEKA+ G GR+DPN++PFLPPP GRL+FS+NPF + +EL GPKIC R+ C
Sbjct: 3446 STWIKMERLNRETGQKEAMGAVCISMELVPVEKAKVMTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMC 3528
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A482S6F5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6F5_9ARCH) HSP 1 Score: 100 bits (248), Expect = 2.760e-25 Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 55 MGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
MG VQIWP EKA P G R PN+NPFLPPP GR++FSLNPFVMGSEL GP +C +I C + ++F FFN ++ L+
Sbjct: 1 MGSICYSVQIWPKEKALAMPVGAARTSPNTNPFLPPPVGRMQFSLNPFVMGSELCGPVLCAKIFCCMMCVVFCLLMIFFQPFFNIVINLI 90
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Match: A0A6G0WJX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJX2_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.620e-25 Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 1 SYWLKMDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPTGRLRFSLNPFVMGSELFGPKICCRIACXXXXXFTIVFAVYFSSFFNFLLTLV 324
S W+KM+R N TG KE MG + +++ P+EKA+ Q G GR+DPN+NPFLPPP+GRL+FS+NPF + ++L GPKIC R C +V + F N L+ ++
Sbjct: 1679 STWIKMERLNRATGVKEPMGAVCISMELVPIEKAKIQSVGFGRSDPNNNPFLPPPSGRLKFSMNPFYVFNQLLGPKICRRFMCCLCCVAVMVAMYFLGPFINILIVML 1786 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54903.12888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54903.12888.1 >prot_H-elongata_contig54903.12888.1 ID=prot_H-elongata_contig54903.12888.1|Name=mRNA_H-elongata_contig54903.12888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp MDRTNYETGQKEQMGKCLVGVQIWPVEKAEQQPAGIGRNDPNSNPFLPPPback to top mRNA from alignment at H-elongata_contig54903:54..896+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54903.12888.1 ID=mRNA_H-elongata_contig54903.12888.1|Name=mRNA_H-elongata_contig54903.12888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig54903:54..896+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54903:54..896+ >mRNA_H-elongata_contig54903.12888.1 ID=mRNA_H-elongata_contig54903.12888.1|Name=mRNA_H-elongata_contig54903.12888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig54903:54..896+ (Himanthalia elongata Himel1 dioecious)back to top |