mRNA_H-elongata_contig54901.12887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54901.12887.1
Unique NamemRNA_H-elongata_contig54901.12887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: D8LMD3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.300e-28
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   10 LASVGGVCCWQAFHELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGNATP 306
            L  + GV   Q  HE+GH  MA +  ++MG P+FIPSLQ          GLFGAITPLLSFPKNRK YFDVA+AGPL+GT VSL VF+ GI  TG+ATP
Sbjct:  540 LPIMMGVLTLQFIHEIGHRVMAGNKDIEMGPPIFIPSLQT---------GLFGAITPLLSFPKNRKDYFDVASAGPLLGTFVSLAVFVVGIMMTGSATP 629          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: A0A835ZIQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIQ3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.620e-18
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   10 LASVGGVCCWQAFHELGHW--AMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGNAT 303
            L    G+   Q  HEL H   A+A+  K  +G PVFIPSLQ          G FG ITP  +FP++RKQ FDV+ AGP +G +VSLG  I G+  TG AT
Sbjct:  138 LPVAAGILGLQLVHELAHRLAALASGKKNLLGPPVFIPSLQV---------GTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGAT 228          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: W7TYH6_9STRA (Peptidase m50 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYH6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.930e-17
Identity = 44/102 (43.14%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 DDKLASVGGVCCWQAFHELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGNATP 306
            DD L    G+   Q  H+L H  MA +  VK+G P++IPSLQ          G FG++   +SFPK RK  FDVA AGPL G  +S   F AG+  T  A P
Sbjct:  571 DDALPVAAGILGIQLAHDLAHNLMARTKDVKLGVPIYIPSLQV---------GTFGSVLRFVSFPKRRKDMFDVALAGPLTGLALSFAAFAAGMAMTQGAAP 663          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: A0A2V3J2Y1_9FLOR (Putative zinc metalloprotease EGY2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Y1_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 4.590e-16
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   25 GVCCWQAFHELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGN 297
            G       H++GH   A+   +K+G P FIPSLQ         +G +G ITPL S+P+ R+  FD A AGP++GTLVSL   IAG+  TG+
Sbjct:  330 GAIAISLIHDIGHRVAASVRGIKLGLPFFIPSLQ---------IGTYGTITPLESYPRLRRDMFDFAVAGPIVGTLVSLAALIAGLVITGS 411          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: A0A7S0XJC7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJC7_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 1.160e-15
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   49 HELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFT 291
            HE+ H+A+A +  VK+G P+ IPSLQ          G +G+ITP+ SFP+NR   FD+AAAGP  G L SLG   AG++ T
Sbjct:  312 HEVAHFAVAKARNVKLGTPLIIPSLQV---------GSYGSITPMRSFPRNRSDLFDIAAAGPAAGFLCSLGSLFAGLSMT 383          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: M2WYG4_GALSU (Peptidase, M50 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WYG4_GALSU)

HSP 1 Score: 79.7 bits (195), Expect = 3.000e-15
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   49 HELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFT 291
            HE+GH  +A+   +K+G P+ +PSLQ         +G +G ITPL  FPKNR  +FDV  AGPL+G + S+ +F+ G+T +
Sbjct:  391 HEMGHRIVASMKNIKLGLPLTVPSLQ---------IGSYGTITPLKDFPKNRSDFFDVTVAGPLVGVVTSVTLFVVGLTLS 462          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: R7Q4W8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4W8_CHOCR)

HSP 1 Score: 77.8 bits (190), Expect = 1.400e-14
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   49 HELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGN 297
            HE GH   A+   VK+G P FIPSLQ         +G +G ITPL S+P  RK  FDVA AGPL+G++ S+   IAG+  T +
Sbjct:  318 HEAGHRVAASMRDVKIGLPYFIPSLQ---------IGTYGTITPLESYPNLRKDLFDVAVAGPLVGSVASISALIAGLLITSS 391          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: K0T8T0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8T0_THAOC)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-14
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   25 GVCCWQAFHELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGNAT 303
            GV    A HE  H   A  +KV+MG PV +PSL+          G FG+ITPL SFP +RK  FD+A +GPL+ TLVS  + ++G+  T  A+
Sbjct:  438 GVLAVSAIHECSHILAARVHKVEMGCPVPLPSLET---------GTFGSITPLRSFPSDRKAMFDIAISGPLVATLVSFLLIVSGLDLTVTAS 521          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: A0A5J4Z2W4_PORPP (Putative zinc metalloprotease EGY1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W4_PORPP)

HSP 1 Score: 77.0 bits (188), Expect = 2.650e-14
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   49 HELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTG 294
            H++    +AA   +++G P+F+PSLQ         LG +GAITP +SFPK+R   FDVAA GPL+G ++SL   ++G+  +G
Sbjct:  394 HDIAQRIVAAQKNIELGLPLFVPSLQ---------LGTYGAITPFISFPKDRNDMFDVAAVGPLVGMILSLSSLVSGLYMSG 466          
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Match: A0A1Z5J7G1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7G1_FISSO)

HSP 1 Score: 77.0 bits (188), Expect = 2.660e-14
Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   19 VGGVCCWQAFHELGHWAMAASNKVKMGAPVFIPSLQARMELLQLRLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGNAT 303
            V G+   QA HE+ H  +A  N ++ G PV IPS         L  GLFG ITPL SFP+NR   FD A +GPL G +VSL + I G+  T NA+
Sbjct:  400 VAGIIAVQAAHEVAHLLVARRNGIRTGKPVPIPSPY-------LHAGLFGCITPLRSFPRNRCSLFDWALSGPLTGIIVSLVLMIFGLHHTVNAS 487          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54901.12887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD3_ECTSI1.300e-2859.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZIQ3_9STRA6.620e-1847.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TYH6_9STRA3.930e-1743.14Peptidase m50 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A2V3J2Y1_9FLOR4.590e-1643.96Putative zinc metalloprotease EGY2, chloroplastic ... [more]
A0A7S0XJC7_9RHOD1.160e-1548.15Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
M2WYG4_GALSU3.000e-1543.21Peptidase, M50 family protein n=1 Tax=Galdieria su... [more]
R7Q4W8_CHOCR1.400e-1446.99Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
K0T8T0_THAOC1.430e-1444.09Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A5J4Z2W4_PORPP2.650e-1442.68Putative zinc metalloprotease EGY1, chloroplastic ... [more]
A0A1Z5J7G1_FISSO2.660e-1446.32Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54901contigH-elongata_contig54901:207..1033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D8LMD3
Preferred nameEGY1
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009723,GO:0009725,GO:0009959,GO:0009987,GO:0010027,GO:0010033,GO:0010207,GO:0015979,GO:0016043,GO:0016787,GO:0019538,GO:0019684,GO:0022607,GO:0034622,GO:0042221,GO:0043157,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0050896,GO:0060359,GO:0061024,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901698
EggNOG free text desc.response to cation stress
EggNOG OGs2QUAP@2759,COG0750@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.7333148-CDS-H-elongata_contig54901:206..3591622930894.7333148-CDS-H-elongata_contig54901:206..359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54901 207..359 -
1691679615.1797113-CDS-H-elongata_contig54901:206..3591691679615.1797113-CDS-H-elongata_contig54901:206..359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54901 207..359 -
1622930894.7516446-CDS-H-elongata_contig54901:880..10331622930894.7516446-CDS-H-elongata_contig54901:880..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54901 881..1033 -
1691679615.1951149-CDS-H-elongata_contig54901:880..10331691679615.1951149-CDS-H-elongata_contig54901:880..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54901 881..1033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54901.12887.1prot_H-elongata_contig54901.12887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54901 207..1033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54901.12887.1

>prot_H-elongata_contig54901.12887.1 ID=prot_H-elongata_contig54901.12887.1|Name=mRNA_H-elongata_contig54901.12887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
DDKLASVGGVCCWQAFHELGHWAMAASNKVKMGAPVFIPSLQARMELLQL
RLGLFGAITPLLSFPKNRKQYFDVAAAGPLIGTLVSLGVFIAGITFTGNA
TP
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mRNA from alignment at H-elongata_contig54901:207..1033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54901.12887.1 ID=mRNA_H-elongata_contig54901.12887.1|Name=mRNA_H-elongata_contig54901.12887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=827bp|location=Sequence derived from alignment at H-elongata_contig54901:207..1033- (Himanthalia elongata Himel1 dioecious)
GATGACAAACTTGCGTCGGTTGGGGGCGTTTGTTGTTGGCAGGCGTTTCA CGAGCTGGGACACTGGGCGATGGCGGCATCAAACAAGGTCAAGATGGGGG CACCGGTCTTCATCCCGTCGCTCCAGGCGAGAATGGAACTCCTTCAGCTG CGTGTTTCCTGCGGGGGGAGTGTAGGATGTTCTTCCTGCCTGTATATTAA GCGGTTCAACCTGCCGCAACGCGAACTGTTCCGCCTGTGCGTGATCCTAA GGATTCTCATGTCTCCATCTAGTCCGAGTTCTCACGCATACGAAAAGTTA TCGCGGTGCCCGTCCAGCACTCCTACAGTACGTCCTCAGTTGACGATGGT TGAAATTTGACAGCGAAGCGAGCCCATGGTGCTAAGCCCCGGGAAACGGT TACGGTAAAAGCAATGATCCACATTGTGTGCAAAATAAACTAACATGGTT TCCGCGAAGGGTTTTTAAAGTTCGAGCCTCTTAGCGCACCCATGAACCGT GCTCCGGAAGACAATGAAAAAATCGCCCGTTGGTCGCTGTTTTCTTGGTT AAACATGCGCAACACACCTTTACAAAACCTCAGAACCAAGTCTTGAAGTC CTCGAAAATATTTTGATTTTCTTTTTTCCATTTGCTGACTGGACCTCTCC CACCCAAAACACCTCTTGGAACAGCTCGGGCTGTTCGGTGCGATTACACC GCTGCTGTCGTTTCCGAAGAACCGCAAGCAGTACTTCGACGTGGCAGCGG CGGGGCCGCTGATTGGGACTCTGGTGTCCCTGGGGGTGTTCATCGCCGGG ATCACATTTACGGGGAACGCCACTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig54901:207..1033-

>mRNA_H-elongata_contig54901.12887.1 ID=mRNA_H-elongata_contig54901.12887.1|Name=mRNA_H-elongata_contig54901.12887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig54901:207..1033- (Himanthalia elongata Himel1 dioecious)
GATGACAAACTTGCGTCGGTTGGGGGCGTTTGTTGTTGGCAGGCGTTTCA
CGAGCTGGGACACTGGGCGATGGCGGCATCAAACAAGGTCAAGATGGGGG
CACCGGTCTTCATCCCGTCGCTCCAGGCGAGAATGGAACTCCTTCAGCTG
CGTGATGACAAACTTGCGTCGGTTGGGGGCGTTTGTTGTTGGCAGGCGTT
TCACGAGCTGGGACACTGGGCGATGGCGGCATCAAACAAGGTCAAGATGG
GGGCACCGGTCTTCATCCCGTCGCTCCAGGCGAGAATGGAACTCCTTCAG
CTGCGTCTCGGGCTGTTCGGTGCGATTACACCGCTGCTGTCGTTTCCGAA
GAACCGCAAGCAGTACTTCGACGTGGCAGCGGCGGGGCCGCTGATTGGGA
CTCTGGTGTCCCTGGGGGTGTTCATCGCCGGGATCACATTTACGGGGAAC
GCCACTCCGCTCGGGCTGTTCGGTGCGATTACACCGCTGCTGTCGTTTCC
GAAGAACCGCAAGCAGTACTTCGACGTGGCAGCGGCGGGGCCGCTGATTG
GGACTCTGGTGTCCCTGGGGGTGTTCATCGCCGGGATCACATTTACGGGG
AACGCCACTCCG
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