mRNA_H-elongata_contig54900.12886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54900.12886.1
Unique NamemRNA_H-elongata_contig54900.12886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54900.12886.1 vs. uniprot
Match: UPI001035699E (uncharacterized protein LOC114268089 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035699E)

HSP 1 Score: 58.2 bits (139), Expect = 3.330e-7
Identity = 44/164 (26.83%), Postives = 67/164 (40.85%), Query Frame = 1 
Query:   34 CMDCCHLKGIWNGILCLLTVKDADNKLVIVCMVVSVVENADVYDYTLLHAKKTPDMAGFVNHETTTYFVDGHKGSATGLPRRVPLSEGRRCLRHIVGNITPD----DCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYAW----RSNHI 501
            C+D CHLKG + G+L  +   D DN L ++   V   E    + + L H +   D       +  T   DG KG    L    P +  RRC RH+  N              +  AR   E  +N  M +++ +   +Y  +  L    WA + +    +SNHI
Sbjct:   48 CVDGCHLKGSYGGVLLAVVALDRDNGLFLLAYAVVECECKKNWRFFLYHLRTIIDNGP--QSKPRTIMSDGQKGIEPALKEVTPEATHRRCCRHLFNNFKSKFPGLKLRGSFWAVARAYTEKDYNIVMRQIEEMPKPAYKWLNDLKLEVWARHTFDPRVKSNHI 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54900.12886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001035699E3.330e-726.83uncharacterized protein LOC114268089 n=1 Tax=Camel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54900contigH-elongata_contig54900:2914..3834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.8
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog161934.XP_010696204.1
KEGG koko:K17086
EggNOG OGs2CN5X@1,2QU1T@2759,37T40@33090,3GGBN@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.6655452-CDS-H-elongata_contig54900:2913..30781622930894.6655452-CDS-H-elongata_contig54900:2913..3078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54900 2914..3078 -
1691679615.1505861-CDS-H-elongata_contig54900:2913..30781691679615.1505861-CDS-H-elongata_contig54900:2913..3078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54900 2914..3078 -
1622930894.6858494-CDS-H-elongata_contig54900:3495..38341622930894.6858494-CDS-H-elongata_contig54900:3495..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54900 3496..3834 -
1691679615.1629229-CDS-H-elongata_contig54900:3495..38341691679615.1629229-CDS-H-elongata_contig54900:3495..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54900 3496..3834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54900.12886.1prot_H-elongata_contig54900.12886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54900 2914..3834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54900.12886.1

>prot_H-elongata_contig54900.12886.1 ID=prot_H-elongata_contig54900.12886.1|Name=mRNA_H-elongata_contig54900.12886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
CYRGFLSTQVFCMDCCHLKGIWNGILCLLTVKDADNKLVIVCMVVSVVEN
ADVYDYTLLHAKKTPDMAGFVNHETTTYFVDGHKGSATGLPRRVPLSEGR
RCLRHIVGNITPDDCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIM
ALPRSSWANYAWRSNHI*
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mRNA from alignment at H-elongata_contig54900:2914..3834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54900.12886.1 ID=mRNA_H-elongata_contig54900.12886.1|Name=mRNA_H-elongata_contig54900.12886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=921bp|location=Sequence derived from alignment at H-elongata_contig54900:2914..3834- (Himanthalia elongata Himel1 dioecious)
TGCTACCGTGGATTTTTATCTACCCAGGTCTTCTGCATGGACTGCTGCCA
CCTCAAGGGAATCTGGAACGGTATTCTGTGCCTGTTGACGGTGAAAGACG
CTGACAACAAGCTCGTTATTGTCTGCATGGTTGTGTCAGTCGTGGAAAAT
GCTGATGTGTACGACTACACCCTACTACACGCCAAGAAAACCCCGGACAT
GGCGGGGTTTGTAAACCACGAGACAACCACGTACTTCGTCGACGGTCACA
AGGGCTCGGCGACAGGCCTTCCGCGGAGGGTCCCGCTCTCAGAGGGAAGG
AGGTGTCTGAGGCATATTGTCGGTAACATCACCCCTGACGTCGGCGCGGT
GACTGATTGTTAGTCTGGTGCACGGTATTAATGCCTGTATTTTTTCGGAG
GGGGGAGGGGTTAGATTGCAGTGTTTTCCAGCGGCTTGCAGTGTCTGGTT
CACACGCTTAAATCACATCCCTGTTTTTCGGCTACGCTCAACGTTCCTTT
GTTTCCTTTTTTCCGGTGTTGGACCTCGGCTAATTGTCGGTCCCTTTTAT
TGTTTCTGCATCCTTGGTATTTTCTTTGGTTGATTTCATTCTAATATTTT
TGTTGGGTTCTACCCATCTTGTTGACCGCGGCTGAGTTCGGAGCGGATTA
TTGTAAGTGAAATGAACAAGGGCCAATAAACAACAAACACGCGTGAGCAA
CTTGTAGGCAGCGAGAGCATGAAATTCTGATCCCACCATTCCCCTCCTTT
TCCTAGGACTGCAACAAACTCATATTTGAGGCCGCGAGGGAGCCCAATGA
GATGCTGTTCAACGAATGCATGGACAAGGTCAAGGTTCTGAAGCCCGCAA
GCTACGACAAGATCATGGCCCTCCCGCGATCGTCGTGGGCCAACTACGCG
TGGCGCTCCAACCACATCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig54900:2914..3834-

>mRNA_H-elongata_contig54900.12886.1 ID=mRNA_H-elongata_contig54900.12886.1|Name=mRNA_H-elongata_contig54900.12886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig54900:2914..3834- (Himanthalia elongata Himel1 dioecious)
TGCTACCGTGGATTTTTATCTACCCAGGTCTTCTGCATGGACTGCTGCCA
CCTCAAGGGAATCTGGAACGGTATTCTGTGCCTGTTGACGGTGAAAGACG
CTGACAACAAGCTCGTTATTGTCTGCATGGTTGTGTCAGTCGTGGAAAAT
GCTGATGTGTACGACTACACCCTACTACACGCCAAGAAAACCCCGGACAT
GGCGGGGTTTGTAAACCACGAGACAACCACGTACTTCGTCGACGGTCACA
AGGGCTCGGCGACAGGCCTTCCGCGGAGGGTCCCGCTCTCAGAGGGAAGG
AGGTGTCTGAGGCATATTGTCGGTAACATCACCCCTGACTGCTACCGTGG
ATTTTTATCTACCCAGGTCTTCTGCATGGACTGCTGCCACCTCAAGGGAA
TCTGGAACGGTATTCTGTGCCTGTTGACGGTGAAAGACGCTGACAACAAG
CTCGTTATTGTCTGCATGGTTGTGTCAGTCGTGGAAAATGCTGATGTGTA
CGACTACACCCTACTACACGCCAAGAAAACCCCGGACATGGCGGGGTTTG
TAAACCACGAGACAACCACGTACTTCGTCGACGGTCACAAGGGCTCGGCG
ACAGGCCTTCCGCGGAGGGTCCCGCTCTCAGAGGGAAGGAGGTGTCTGAG
GCATATTGTCGGTAACATCACCCCTGACGACTGCAACAAACTCATATTTG
AGGCCGCGAGGGAGCCCAATGAGATGCTGTTCAACGAATGCATGGACAAG
GTCAAGGTTCTGAAGCCCGCAAGCTACGACAAGATCATGGCCCTCCCGCG
ATCGTCGTGGGCCAACTACGCGTGGCGCTCCAACCACATCTAGGACTGCA
ACAAACTCATATTTGAGGCCGCGAGGGAGCCCAATGAGATGCTGTTCAAC
GAATGCATGGACAAGGTCAAGGTTCTGAAGCCCGCAAGCTACGACAAGAT
CATGGCCCTCCCGCGATCGTCGTGGGCCAACTACGCGTGGCGCTCCAACC
ACATCTAG
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