mRNA_H-elongata_contig54894.12885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54894.12885.1
Unique NamemRNA_H-elongata_contig54894.12885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.970e-9
Identity = 55/169 (32.54%), Postives = 82/169 (48.52%), Query Frame = 1 
Query:   31 LDTLIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLLGSTTSNEGQAR----TRVPRLQVKTVVWSLPIAALILETSL--LTDVRVMIL-------------------------NVLEEKVNAVVWPRKLERLTFGEDFIQVLEEVSF 444
            L+ LI+ L++T +  G  W+TSTK+LQL SL+ C ACR   +    L V+  IP  LL S  +     +    TRVPRL+ + V W++P AA  L T +  +TD+  +                           +  ++ +  V WP  L+ +TFG DF Q +E V F
Sbjct:   52 LEALIVALNETCD--GKSWYTSTKELQLASLDFCIACRNCQTVH--LNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAK-LRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKF 215
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.780e-7
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 1 
Query:   19 PSRFLDTLIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLL-GSTTSNEGQAR-----TRVPRLQVKTVVWSLPIAALILETS-LLTDVRVMILN--VLEEKVNAVVWPRKLERLTFGEDFIQVLEEVS 441
            PSR LD LI+ L+Q +   G  W+TST  LQL SLE CAACR      + L V H  P  L  G+ T+ E ++      TRVP ++ +TV W LP  AL   T    ++V    L     ++    + WP KL     G  F + +E +S
Sbjct:   40 PSRCLDALIIALNQAS---GGEWYTSTMQLQLTSLELCAACRS--MHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNRSVEHLS 184
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.560e-7
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1 
Query:   31 LDTLIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLLGSTTSNEGQAR----TRVPRLQVKTVVWSLPIAALILETSLLTDVRVMILN---VLEEKVNAVVWPRKLERLTFGE 411
            L TL + L++T +  G  W+TSTK+LQL SLE C ACR   +  + L V+   P  LL +  +     +    TRVPRL+ +   W++P A+  + TS+   + V  L         ++A+VWPR+L+ + F +
Sbjct:  137 LKTLTVALNETCD--GKSWYTSTKELQLASLELCMACRHYQT--LHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASG-MRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQ 265
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.190e-7
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:   31 LDTLIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLL----GSTTSNEGQARTRVPRLQVKTVVWSLPIAALILET--SLLTDVRVMILNVLEEKVNAVVWPRKLERLTF 405
            L+ + + L +T +  G  W+TSTK+LQL SLE C ACR   +  + + V   IP  LL    G     +  +R RVPRL+ + V W++P AA +     +L+    +   +  E  + AV WPR+LE + F
Sbjct:   37 LNAIYVALGETRD--GKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVR--IPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.270e-6
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 1 
Query:   19 PSRFLDTLIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLLGSTTSNEGQ------ARTRVPRLQVKTVVWSLPIAALILETSLLTDVRVMILNVLEEKV-NAVVWPRKLERLTFGEDF 417
            P R L+   + L+ + +  G+ W+TSTK+LQL SL+ C  CR+ PS  + +   H +P+ L     + E +      + T VP  + + V W  P  A +L    L   +V    V ++ V + VVWP +L++L FGE F
Sbjct:    4 PGRCLEAFAVALNTSCD--GNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAH-VPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRP--AWLLSDICLVFAKVERFLVRQDTVVDDVVWPCRLKKLFFGEGF 138
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.790e-6
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:   40 LIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLLGSTTS----NEGQARTRVPRLQVKTVVWSLPIAALILETSL-LTDVRVMILN-VLEEKVNAVVWPRKLERLTF 405
            LI+ L++  +  G  W+TSTK+LQL SLE C ACR+     + L+V+   P +LL +  +     +   RTRVPRL+ + V W++P A  +      L DV  +    V    + AVVWP  L+++ F
Sbjct:   21 LILALNEMCD--GKRWYTSTKELQLASLEFCLACRK--YQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF 144
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BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.310e-5
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    7 TAAAPSRF--LDTLIMTLSQTNEDTGSGWFTSTKDLQLLSLECCAACRRGPSTAMCLRVNHDIPSSLLGSTTSN----EGQARTRVPRLQVKTVVWSLPIAA 294
            T   PSR   L+ L++ L++T    G  W+TSTK+LQL SLE C ACR   +  + L+V+  IP  LL    +     E   RTRVPRL+ + V W +  AA
Sbjct:  104 TMPGPSRSSCLNALVIALNETCN--GESWYTSTKELQLASLEFCVACRNYQT--LHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAA 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54894.12885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE4.970e-932.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA08_9PHAE2.780e-736.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE3.560e-734.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE5.190e-735.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS2_ECTSI1.270e-632.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRK5_9PHAE1.790e-635.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI2.310e-541.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54894contigH-elongata_contig54894:402..1820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1419
Cds size729
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.5939064-CDS-H-elongata_contig54894:401..11301622930894.5939064-CDS-H-elongata_contig54894:401..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54894 402..1130 -
1691679615.1178393-CDS-H-elongata_contig54894:401..11301691679615.1178393-CDS-H-elongata_contig54894:401..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54894 402..1130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.6094174-UTR-H-elongata_contig54894:1130..18201622930894.6094174-UTR-H-elongata_contig54894:1130..1820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54894 1131..1820 -
1691679615.1387181-UTR-H-elongata_contig54894:1130..18201691679615.1387181-UTR-H-elongata_contig54894:1130..1820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54894 1131..1820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54894.12885.1prot_H-elongata_contig54894.12885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54894 402..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54894.12885.1

>prot_H-elongata_contig54894.12885.1 ID=prot_H-elongata_contig54894.12885.1|Name=mRNA_H-elongata_contig54894.12885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MFRHHRSGFNQDIRDVAWPSCLHSLSLGDCFNQETEGIVWPVLLKQLYFK
GSFNQPIRKITWPTSLNHLTFGRDFDQLINGVSLPASLERLTFGRFFNQP
NDKVSWPESLNHLTFGREFDQPIHGVSWPPSLQWVAFRRNFNQPIDRVSW
PASLNHLTFGRNFNQPISGVSWPASLNQIDFGNSFNQPIDGASWPASLQR
LTLGVSFTQPINGVSWPQSLQYVNLRCVFNGLTDEVSSPISLQ
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mRNA from alignment at H-elongata_contig54894:402..1820-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54894.12885.1 ID=mRNA_H-elongata_contig54894.12885.1|Name=mRNA_H-elongata_contig54894.12885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1419bp|location=Sequence derived from alignment at H-elongata_contig54894:402..1820- (Himanthalia elongata Himel1 dioecious)
GAGCGCACAGCTGCTGCGCCTAGTCGCTTCCTGGACACATTGATCATGAC
CCTCAGCCAAACAAACGAGGACACCGGAAGTGGATGGTTCACGTCGACGA
AGGATCTTCAGTTGTTGTCTCTGGAGTGCTGCGCAGCGTGCCGGCGTGGC
CCCAGCACTGCTATGTGCCTGAGAGTGAACCACGACATACCGAGTAGCCT
GCTCGGATCTACTACGAGCAACGAGGGACAAGCTCGTACGCGCGTGCCGC
GACTTCAAGTAAAAACGGTTGTGTGGTCGCTTCCCATCGCTGCGTTGATT
CTTGAGACAAGCCTCCTCACAGATGTACGAGTCATGATTTTGAACGTGTT
GGAGGAAAAGGTGAACGCTGTGGTATGGCCTCGGAAGCTCGAAAGACTGA
CGTTCGGGGAAGATTTTATCCAGGTGCTTGAAGAAGTGTCTTTCCCAACT
TCATTGCGGCAGCTTTCATTCGGTTCCTCCTTCAACCAGTCGATTGATCG
AGTTGTATGACCTCCCGCGCTTGAGACGTTGGTGTTGGGTTTTGACTTTG
ACCAAGTCATTGATCACGTGAAGTGGCCCAGTTCCCTTCAGCAGCTCACG
TTTGGCGAGGGGTTTAACAAGCCAATAAAGAAGGTGAAGTGGCCCGCGTC
GCTACAGCAACTGACCTTTGGTAAGGGCTGTGGTCGCGTTATGTTTAGGC
ATCACAGGAGCGGCTTCAACCAAGATATTCGGGACGTGGCCTGGCCATCC
TGCCTCCACAGCCTATCGCTTGGGGATTGTTTCAATCAAGAAACTGAAGG
CATCGTGTGGCCGGTATTGTTAAAGCAGTTGTACTTTAAAGGTTCCTTTA
ATCAGCCGATCCGAAAAATAACATGGCCGACGTCACTTAATCATCTAACG
TTTGGGCGGGACTTCGATCAATTGATCAATGGAGTCTCGTTGCCGGCATC
CTTGGAGCGGTTGACGTTCGGGCGTTTTTTTAACCAGCCGAACGATAAAG
TCTCGTGGCCTGAGTCGCTAAATCATCTGACATTTGGACGGGAGTTCGAC
CAGCCAATCCATGGAGTATCCTGGCCACCGTCGCTACAGTGGGTCGCGTT
CAGGAGAAACTTCAACCAACCGATCGATAGAGTCTCCTGGCCCGCGTCAC
TAAACCATCTCACGTTTGGGCGGAACTTCAACCAACCGATAAGCGGAGTC
TCGTGGCCTGCGTCGCTGAATCAAATCGACTTTGGAAATAGCTTCAACCA
GCCAATTGATGGAGCATCATGGCCAGCGTCGCTGCAGCGGTTGACGCTTG
GGGTGTCGTTTACTCAGCCTATCAATGGAGTGTCGTGGCCGCAATCCCTG
CAGTATGTGAATTTACGATGTGTCTTCAATGGGCTGACCGACGAAGTCTC
GTCGCCTATATCGCTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig54894:402..1820-

>mRNA_H-elongata_contig54894.12885.1 ID=mRNA_H-elongata_contig54894.12885.1|Name=mRNA_H-elongata_contig54894.12885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig54894:402..1820- (Himanthalia elongata Himel1 dioecious)
ATGTTTAGGCATCACAGGAGCGGCTTCAACCAAGATATTCGGGACGTGGC
CTGGCCATCCTGCCTCCACAGCCTATCGCTTGGGGATTGTTTCAATCAAG
AAACTGAAGGCATCGTGTGGCCGGTATTGTTAAAGCAGTTGTACTTTAAA
GGTTCCTTTAATCAGCCGATCCGAAAAATAACATGGCCGACGTCACTTAA
TCATCTAACGTTTGGGCGGGACTTCGATCAATTGATCAATGGAGTCTCGT
TGCCGGCATCCTTGGAGCGGTTGACGTTCGGGCGTTTTTTTAACCAGCCG
AACGATAAAGTCTCGTGGCCTGAGTCGCTAAATCATCTGACATTTGGACG
GGAGTTCGACCAGCCAATCCATGGAGTATCCTGGCCACCGTCGCTACAGT
GGGTCGCGTTCAGGAGAAACTTCAACCAACCGATCGATAGAGTCTCCTGG
CCCGCGTCACTAAACCATCTCACGTTTGGGCGGAACTTCAACCAACCGAT
AAGCGGAGTCTCGTGGCCTGCGTCGCTGAATCAAATCGACTTTGGAAATA
GCTTCAACCAGCCAATTGATGGAGCATCATGGCCAGCGTCGCTGCAGCGG
TTGACGCTTGGGGTGTCGTTTACTCAGCCTATCAATGGAGTGTCGTGGCC
GCAATCCCTGCAGTATGTGAATTTACGATGTGTCTTCAATGGGCTGACCG
ACGAAGTCTCGTCGCCTATATCGCTGCAGATGTTTAGGCATCACAGGAGC
GGCTTCAACCAAGATATTCGGGACGTGGCCTGGCCATCCTGCCTCCACAG
CCTATCGCTTGGGGATTGTTTCAATCAAGAAACTGAAGGCATCGTGTGGC
CGGTATTGTTAAAGCAGTTGTACTTTAAAGGTTCCTTTAATCAGCCGATC
CGAAAAATAACATGGCCGACGTCACTTAATCATCTAACGTTTGGGCGGGA
CTTCGATCAATTGATCAATGGAGTCTCGTTGCCGGCATCCTTGGAGCGGT
TGACGTTCGGGCGTTTTTTTAACCAGCCGAACGATAAAGTCTCGTGGCCT
GAGTCGCTAAATCATCTGACATTTGGACGGGAGTTCGACCAGCCAATCCA
TGGAGTATCCTGGCCACCGTCGCTACAGTGGGTCGCGTTCAGGAGAAACT
TCAACCAACCGATCGATAGAGTCTCCTGGCCCGCGTCACTAAACCATCTC
ACGTTTGGGCGGAACTTCAACCAACCGATAAGCGGAGTCTCGTGGCCTGC
GTCGCTGAATCAAATCGACTTTGGAAATAGCTTCAACCAGCCAATTGATG
GAGCATCATGGCCAGCGTCGCTGCAGCGGTTGACGCTTGGGGTGTCGTTT
ACTCAGCCTATCAATGGAGTGTCGTGGCCGCAATCCCTGCAGTATGTGAA
TTTACGATGTGTCTTCAATGGGCTGACCGACGAAGTCTCGTCGCCTATAT
CGCTGCAG
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