prot_H-elongata_contig54889.12884.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54889.12884.1
Unique Nameprot_H-elongata_contig54889.12884.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length163
Homology
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BLAST of mRNA_H-elongata_contig54889.12884.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.660e-45
Identity = 91/156 (58.33%), Postives = 112/156 (71.79%), Query Frame = 0 
Query:    8 QEIYKEPDFRSMGQSVVRTAMALNESIAFVLAQMTLEGQRAAESDMQLKADLVKQRHENGRLTMQLRNQNASMEQKLSEADHKLRLREKELVDLQARLYSAKSQEAYKEKSRKCQAWEKAYGNLRSQTNRGSRGGGGFTPPESPRAGVLRGSNTSF 163
            +E  KEP+  S  Q+ +RTA   NE++ F+ +QM LE QR AE+   LK ++ K +HE GR+TMQ+RNQNA+ +QK  E +HKLR+R KELVDLQ         EAYKEK+RKCQAWEKAY NLRSQT   SRGGG FTPPESPRAG +RG + SF
Sbjct:   89 EEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLENQRGAEATSVLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQ---------EAYKEKNRKCQAWEKAYANLRSQTTDPSRGGG-FTPPESPRAGAMRGPSGSF 234
[Close]
BLAST of mRNA_H-elongata_contig54889.12884.1 vs. uniprot
Match: A0A6H5JFE1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.550e-33
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 0 
Query:    8 QEIYKEPDFRSMGQSVVRTAMALNESIAFVLAQMTLEGQRAAESDMQLKADLVKQRHENGRLTMQLRNQNASMEQKLSEADHKLRLREKELVDLQARLYSAKSQEAYKEKSRKCQAWEKAYGNLRSQTNR 137
            QE  KEP++ S  Q+ +RTA   NE++ F+ +QM LE QR AE+   LK ++ K +HE GR+TMQ+RNQNA+ +QK  E +HKLR+R KELVDLQ         EAYKEK+RKCQAWEKAY NLRSQ  R
Sbjct:  152 QEALKEPNYHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKQREMEHKLRVRTKELVDLQ---------EAYKEKNRKCQAWEKAYANLRSQGRR 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54889.12884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDC0_ECTSI8.660e-4558.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFE1_9PHAE1.550e-3356.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54889contigH-elongata_contig54889:267..2168 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54889.12884.1mRNA_H-elongata_contig54889.12884.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54889 267..2168 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54889.12884.1 ID=prot_H-elongata_contig54889.12884.1|Name=mRNA_H-elongata_contig54889.12884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MYDNNDPQEIYKEPDFRSMGQSVVRTAMALNESIAFVLAQMTLEGQRAAE
SDMQLKADLVKQRHENGRLTMQLRNQNASMEQKLSEADHKLRLREKELVD
LQARLYSAKSQEAYKEKSRKCQAWEKAYGNLRSQTNRGSRGGGGFTPPES
PRAGVLRGSNTSF
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