mRNA_H-elongata_contig5486.12881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5486.12881.1
Unique NamemRNA_H-elongata_contig5486.12881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5486.12881.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.670e-24
Identity = 96/175 (54.86%), Postives = 106/175 (60.57%), Query Frame = 1 
Query:  385 FRGDAYFKDHGCTEGAAVQNGGRMRFYGKARFTDNRNYYSWGGGVVN-------DGGTLVFRAAVKFTNNQAEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFSVTVGAEYDSDPTPGSLTFEKPSVVRYIGNEA--------PVNACTLAYVE-NGTTLVGFDVDDVCLENT 861
            FR DA F DH C EGAAV N G+MRFYGKA F+DNRNY   GGGV+N         G LVF+AAV+F  N AE         XXXXXXXXXXXXXXXXXXXX    VT           GS+TFEKP VVR   N          P+  C+LAYVE N TT+VGFD DD+C E T
Sbjct:  230 FRDDAVFSDHDCDEGAAVSNTGKMRFYGKAYFSDNRNYRDTGGGVLNRAVYDSDQAGDLVFKAAVQFNRNTAEYGGGIAVTGXXXXXXXXXXXXXXXXXXXXXXXXVTGD---------GSVTFEKPEVVRISDNTLLANEYNPDPITGCSLAYVEGNETTVVGFDFDDICQEVT 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5486.12881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHY2_ECTSI3.670e-2454.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5486contigH-elongata_contig5486:79..5120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size2873
Cds size513
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.996775-UTR-H-elongata_contig5486:78..1531622930893.996775-UTR-H-elongata_contig5486:78..153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 79..153 +
1691679614.8599105-UTR-H-elongata_contig5486:78..1531691679614.8599105-UTR-H-elongata_contig5486:78..153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 79..153 +
1622930894.0172954-UTR-H-elongata_contig5486:639..6741622930894.0172954-UTR-H-elongata_contig5486:639..674Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 640..674 +
1691679614.8793035-UTR-H-elongata_contig5486:639..6741691679614.8793035-UTR-H-elongata_contig5486:639..674Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 640..674 +
1622930894.0365627-UTR-H-elongata_contig5486:930..9831622930894.0365627-UTR-H-elongata_contig5486:930..983Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 931..983 +
1691679614.8910136-UTR-H-elongata_contig5486:930..9831691679614.8910136-UTR-H-elongata_contig5486:930..983Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 931..983 +
1622930894.1105893-UTR-H-elongata_contig5486:1073..12641622930894.1105893-UTR-H-elongata_contig5486:1073..1264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 1074..1264 +
1691679614.9095926-UTR-H-elongata_contig5486:1073..12641691679614.9095926-UTR-H-elongata_contig5486:1073..1264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 1074..1264 +
1622930894.2875652-UTR-H-elongata_contig5486:3114..51201622930894.2875652-UTR-H-elongata_contig5486:3114..5120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 3115..5120 +
1691679614.9910617-UTR-H-elongata_contig5486:3114..51201691679614.9910617-UTR-H-elongata_contig5486:3114..5120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5486 3115..5120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.1927352-CDS-H-elongata_contig5486:1264..13681622930894.1927352-CDS-H-elongata_contig5486:1264..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 1265..1368 +
1691679614.9315367-CDS-H-elongata_contig5486:1264..13681691679614.9315367-CDS-H-elongata_contig5486:1264..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 1265..1368 +
1622930894.2073011-CDS-H-elongata_contig5486:1536..16201622930894.2073011-CDS-H-elongata_contig5486:1536..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 1537..1620 +
1691679614.9424963-CDS-H-elongata_contig5486:1536..16201691679614.9424963-CDS-H-elongata_contig5486:1536..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 1537..1620 +
1622930894.228812-CDS-H-elongata_contig5486:1842..19201622930894.228812-CDS-H-elongata_contig5486:1842..1920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 1843..1920 +
1691679614.953558-CDS-H-elongata_contig5486:1842..19201691679614.953558-CDS-H-elongata_contig5486:1842..1920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 1843..1920 +
1622930894.2448528-CDS-H-elongata_contig5486:2196..22831622930894.2448528-CDS-H-elongata_contig5486:2196..2283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 2197..2283 +
1691679614.9648533-CDS-H-elongata_contig5486:2196..22831691679614.9648533-CDS-H-elongata_contig5486:2196..2283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 2197..2283 +
1622930894.2577007-CDS-H-elongata_contig5486:2599..26661622930894.2577007-CDS-H-elongata_contig5486:2599..2666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 2600..2666 +
1691679614.973785-CDS-H-elongata_contig5486:2599..26661691679614.973785-CDS-H-elongata_contig5486:2599..2666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 2600..2666 +
1622930894.2738886-CDS-H-elongata_contig5486:3021..31141622930894.2738886-CDS-H-elongata_contig5486:3021..3114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 3022..3114 +
1691679614.982231-CDS-H-elongata_contig5486:3021..31141691679614.982231-CDS-H-elongata_contig5486:3021..3114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5486 3022..3114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5486.12881.1prot_H-elongata_contig5486.12881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5486 1265..3114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5486.12881.1

>prot_H-elongata_contig5486.12881.1 ID=prot_H-elongata_contig5486.12881.1|Name=mRNA_H-elongata_contig5486.12881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MHPMRNVLSSFRGDAYFKDHGCTEGAAVQNGGRMRFYGKARFTDNRNYYS
WGGGVVNDGGTLVFRAAVKFTNNQAEIGGGIAVTGGEVTFKKAVKFDSNI
ADENGGAFSVTVGAEYDSDPTPGSLTFEKPSVVRYIGNEAPVNACTLAYV
ENGTTLVGFDVDDVCLENTE*
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mRNA from alignment at H-elongata_contig5486:79..5120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5486.12881.1 ID=mRNA_H-elongata_contig5486.12881.1|Name=mRNA_H-elongata_contig5486.12881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5042bp|location=Sequence derived from alignment at H-elongata_contig5486:79..5120+ (Himanthalia elongata Himel1 dioecious)
ATTCCGCGGGGAGACCTGGTTTACGAACAACTACTACCTCGCCATTGACA
ACGAAGGCCCGGATGCCTTCGTCAGGTGGGATCACACATATCTCGGATCA
TTTTGAGGTCTCTTCTTTCGATCTGTGTAAGAATAATTACCAGGCTCTCC
ATATAATGTTATAATGTTCCCGACGAGCGACCTCCAGAATGGTATCAGAG
TTACACAGGGAGTGGCTTATTGCCTTGAGGTTGTTACGCGGTAGCGGCGT
CGTGCCTTCTCTTCAGCGTTGAGTTCCATTGTCTTGATATAGTTAAGTGA
TAGCGGCATCATGTTTTCCCTTCAGCGTTGAGTCGCACTTCTTGTTAAAC
AAGACGAAGCTATCTGACTCGTTGTTGTATAATTGCTGCCGCTAAAACGT
GCTTCCAACGATTACATTTTAATTTTTCCCCTCGATGTATTTATGCAACA
GTTTGCACCGGGAGGTTGATTTATGGAATTAATTGTAAGATGTAGTCATA
ATGACTTGCTTCTGATTAAGTTTGCGGATGACGTGCATACATGACTCTAA
CATAATGGCAGGTTCTCAAAGACGGTTACTTTCCAAGACAACGGCGGTAA
GCTGCGACACGATGTTTTCCAATGCCAATATCTACGTTGGATTATTATTA
AGTTTGCGTTAGGTAAAAGAAAGCCGCGCGTTCGCAGTTGCAGGGGGTTC
CAGTCTATGCAAATATGTGCATATTTACATCCTTAGCAATCGATAAATGC
ATGCCTGGAATTGCTAATGATGATATCTGAAGCCTTAGGCCTTTGGGCGC
ATTCAAAATTGAGGTGTCCATTACATACCGTCTCCTTTTGATCATTTTGC
AGGCGCCTTTGACGGTGGCGACGGTTGCTCCGTTTGGAACAGCGAGGGGA
ACGTGGTGTGAGTACGAAGCTTGCGGCGGCAATTAAAAGGCGACCGCTTT
ATTAGAGGTCGCGATAGGTCTTGGTATATGTGTAGTTAATAAGAGCGGCA
GCATGTATTTCTCGAAATTCCGCTAAATAGAGAATGTGCCCATATATTCG
CAGTAAATTTACGTTTTTGTTGAAAGAAAAGATCTGTGAAGGTGTTAAAA
GTGTCACGAGCAAGGAATCACGCGCGAGATTTCTGAAAGTCTCATAGTTG
GTTTGAATTTTGACCACCACGCCCTCCTCGCCCTCGATGCACCCGATGCG
TAACGTCTTGAGTAGCTTCCGTGGTGACGCCTACTTCAAAGACCACGGCT
GCACCGAGGGCGCCGCTGTGCAGAACGGAGGAAGAATGAGGCAAGCTCTG
CCAAGACTCCCTTTGCTTACATATTCGTATCTAGTTCGATCGAAACGGGA
TTATGAATTAGATTTGAGAGGTAATCTAGCTCTGCGTGGGTAAAATCTAC
CTCAAATTTCCAAAAACTCCACATTTACCCATACACTGAATATCGTGATT
CCTTGCAGGTTCTACGGAAAGGCTAGGTTCACGGACAATAGGAATTACTA
CTCATGGGGTGGAGGGGTGGTCAACGATGGTGGAACCCTTGTGTGAGTAC
GATATAGAAACGGGCGTCGCTTACGGCCAATGGAAGACTGTGGAAAAGCA
TAACGGTACCAATGGAAGACTGTGGAAAACCGTTCCCCTACACACATACA
GACGTAGTTTAGGGTCTCCTGTCTAGCTATGACTTCTACAATGCCACATT
CGACCATCCCACTTACCATCTTGTGTCGTGGCTCCATATGATGGCTTGTG
CTATACATCTCCAGCTTCAGGGCGGCGGTGAAGTTCACCAACAACCAGGC
TGAAATTGGGGGAGGTATTGCAGTAACCGGCGGAGAAGTCACGTGAGCTG
AAACATGGAGCAGGGTTATCTATCGCAAAGGCTTCCTGCTGCTCAAGAAG
TCGATTTTTGTTTTTTCTGTGAGCCAACTTGCAGAGTTCATCATTTGTTT
CCTGTGTTGTGTGTTATGGTTCTGGGAGGGTCAATACGGATCGGGCGGAA
TTACCGTCGATTAAAACATGTTATTACAGCGGAATGGAAACTCTGGCGTC
ATTTTGAGGTGGGTTCTAAGCCAATCACCGATGTTGTTAAATGCCATGTT
GCTGCTTCCCAACGACAGGTTCAAGAAGGCGGTCAAGTTCGACAGTAATA
TCGCGGACGAAAATGGTGGCGCATTCTCGGTCACAGTCGGCGCGGAATAC
GACAGGTATAAATAAATTTGTCGGTGGTGTTTGAAATGTTATCAGCTACA
TCCTTTCTCAGTCGACGCCAGAGCGTGACACTGGGGCGTCTATGTTTTTC
GTCGTTGACAGCTTCTTAGATGTAGGGGTTATGTCCAAGCGTTTTCTTAC
AAGCGTCATTTTCTGCTGCCGATGTGCTCTTCAGGAATGTAGCGCCGAGG
GCAAGTTCCCGTTGCCCGTCGAGGGAAACAAAAACAAGATAGTTTTACAC
TAGGAGTATATACGGCTTCTTCCTGTCTTTTCGTTAAAAAGCCCCATTCG
CCTTCCCCTTTTGTTCTCCAGCGACCCAACACCCGGGTCTCTTACATTCG
AGAAGCCCTCGGTCGTGCGCTACATTGGTAATGAGGCGGTAAGAGCGAGA
TAACATGCTGATCTTGTACACTACTGCGCAAGCGATCCCAACAGTCATAA
TTGCTAGACTTGAAAAGTTCTCCCTCGCTGCTAGTACTCATGGTACGTTA
AGGTCTTGATCACGCTTGTGCTCGAACTATATGTTGTACATTGAAAGAGG
TTGACCTATCCGTCGGACCAATTATTAGTCGTGCACACATGTTTTGAGCT
GACGAGTATTCACAAAAACTGAGACGCCGAGTTTTATTGTGTGCTTTGTG
TTTCAATTGGCTTGTGGCAAACCCCTGGACCATCTACGCTACGTTCGCGT
TCGTCTTCGTGTTTCTTTCCCTTGTACAACCGATTATATGCAGCCCGTCA
ACGCCTGCACTCTAGCCTACGTCGAGAATGGCACCACTCTAGTGGGCTTT
GATGTCGATGACGTGTGTCTCGAAAATACTGAGTGAGGCTGACTCTCTGT
ACCATTTTGGCTCCTCTTCTGGCTTGAGAACGGCCACTCATTGTTTGTAT
TAAACTCGATGCGGTGTTGGGATATTTCAGAAATATTGTTTCAAGATATT
CCTGATGAAGGATGGCCCTTAGGGATGAACCAATATGGACTCCGTATGCT
CGCTATCTAAGAGGTTGAGTGTTTAAATGGGTTGTAACCCTAAGGGCTTA
GACGTAGATATCACAAGGAAGTCTTTAGTTAGATTATTATGACCAGAAGG
AAGGTTGGGGTAAGATCATTGCAGGATCTTCTCTAGACTGTGGAAGGTAT
CCTGGGATTATGACATATTTTTGGTAGATTTTGGGAGAGTTGGACGATAT
TTTCACGAGAGCGAAGGGGTTAGAACATGTGTCAACCAGCCTCGCACCTT
TTCTCAGTCCAAATCACCAGCTCATCAGATCCTCTTCAAGCTTGCTCCTC
TATCGAGGGTATTCTCCTGTCACCCTCTTGGGGCCCTGAAAGTGTGCTTT
ATCGCCACATGCACTACCTGCTGCACGCGTACGTACTGCTGCTGTACGGT
GTTCACTTCCAGAGGTGTACGTTAAAATCGCTGTATCGTAGTACTCTCAG
TAACTAACTGTGAGGGGGGTATTCATGACGAGCCTACGGATTACTTATCT
GGATGCGTGTTTGCTCTTTTGCTAAGGTCAACGTCGTGTGATTTTCCAAT
CCTCACGGTGGGTATGCGCGAGAAAGTATGAAAGGTGGACTGCATTGTGA
TCGTTTTAAAAATGGTACTTTTTGCTTATGATGTCGTTGCGGGTGGGGGC
TTGGATATCGACGAGGCGCAAAACGCATCGACCGGCTTATCGGTTTGCAT
TTAGGAGGGAATTATTTGACACGATTTCATGCGCATAACATGTGCTTCTG
AATTCCCTACTTCGTCTTGGGTTTGAAAAGGCACAGTGTTTGGACGCATT
GTGCATTGTTCACGACGTCTTCCTCGAGGAAGCAGTGATAATACATCTGG
TGTGCCCTCCGGAGGGGGCTTCATGGTAACGGCTCACTTGATTGTCAAAT
TATTATGCTTTGTCATTCGTTTTGTATTTTGCGTAGTAATGCGAACTCCA
AATGGCTGCTGTGTTCTCGTGTGGCATATGAAATAACTTGCGCTAGCTGG
TACAAAAATGTGGAGAAGGTTTGCGCCGTGGGGGCTGTCTTTGAAGTGAA
GTGGGCAATGTGCGGGTTAACCGGGAGCCCTTTCCGATTGGTACCTTGAA
GTTTGGTTTATTTTAAGCAATTTGTTTCCGGCCATCATCAAGCAACTCGG
CGTTGTTCATCACCGCAACGTTGATGACTCTGAACGTACGTGAGTACTCT
TTGCACTCAGGCGCTATCCGCGGGATACATTTATCGGTAGCTAACATGAT
GCTTTAAAAAAACTCTTACATAAAACTCTCATGCCGTAATGCTGGCATCG
AAGTTATTCTGGGGCGACGAAAATAATCAGAGCTATGCCAGACTGGTGGC
ATTGTATCCTATGAACGTCAACTGGGTTCGAAATCGGCACATACAATTGA
AGATGAATACATCTTCTTTGTACTCTTTGTGTGGTCATGACAAATAGTAA
GATCAACCGGATTTGGTTGCCTTCTGCTTGTGGTCAGCTGAACAGGGAAA
ATAATGTTCCCCTCTCCCCGTTCGCGCCTGAGAGTTTGATGAGGGAAAGA
GACGGAGGCGAAGATATGAGGGAAAAAAAGGAGGAGGAAAAAGCAGTGAC
TCAGTGTGGGATTATGTGTACTAGACATATGGAGACCCCGAGTCAGTCCC
GACGATGATGAGTTATTTATGCCGCTGACTGTTCGGGGTAGTTTCTCGAA
ACTTCCCACAAATAAAACGCATAACGGTCAAAGCCTTGGCTGGGACTGTG
TTTCCACAACTTACGCCTGGTACCCACATCACCCTCCTCCAGCTTTTGTT
GTGGGTGAACCCTATTGTTAAATCGACGAAAAGGAAATGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig5486:79..5120+

>mRNA_H-elongata_contig5486.12881.1 ID=mRNA_H-elongata_contig5486.12881.1|Name=mRNA_H-elongata_contig5486.12881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig5486:79..5120+ (Himanthalia elongata Himel1 dioecious)
ATGCACCCGATGCGTAACGTCTTGAGTAGCTTCCGTGGTGACGCCTACTT
CAAAGACCACGGCTGCACCGAGGGCGCCGCTGTGCAGAACGGAGGAAGAA
TGAGATGCACCCGATGCGTAACGTCTTGAGTAGCTTCCGTGGTGACGCCT
ACTTCAAAGACCACGGCTGCACCGAGGGCGCCGCTGTGCAGAACGGAGGA
AGAATGAGGTTCTACGGAAAGGCTAGGTTCACGGACAATAGGAATTACTA
CTCATGGGGTGGAGGGGTGGTCAACGATGGTGGAACCCTTGTGTTCTACG
GAAAGGCTAGGTTCACGGACAATAGGAATTACTACTCATGGGGTGGAGGG
GTGGTCAACGATGGTGGAACCCTTGTCTTCAGGGCGGCGGTGAAGTTCAC
CAACAACCAGGCTGAAATTGGGGGAGGTATTGCAGTAACCGGCGGAGAAG
TCACCTTCAGGGCGGCGGTGAAGTTCACCAACAACCAGGCTGAAATTGGG
GGAGGTATTGCAGTAACCGGCGGAGAAGTCACGTTCAAGAAGGCGGTCAA
GTTCGACAGTAATATCGCGGACGAAAATGGTGGCGCATTCTCGGTCACAG
TCGGCGCGGAATACGACAGGTTCAAGAAGGCGGTCAAGTTCGACAGTAAT
ATCGCGGACGAAAATGGTGGCGCATTCTCGGTCACAGTCGGCGCGGAATA
CGACAGCGACCCAACACCCGGGTCTCTTACATTCGAGAAGCCCTCGGTCG
TGCGCTACATTGGTAATGAGGCGCGACCCAACACCCGGGTCTCTTACATT
CGAGAAGCCCTCGGTCGTGCGCTACATTGGTAATGAGGCGCCCGTCAACG
CCTGCACTCTAGCCTACGTCGAGAATGGCACCACTCTAGTGGGCTTTGAT
GTCGATGACGTGTGTCTCGAAAATACTGAGTGACCCGTCAACGCCTGCAC
TCTAGCCTACGTCGAGAATGGCACCACTCTAGTGGGCTTTGATGTCGATG
ACGTGTGTCTCGAAAATACTGAGTGA
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