prot_H-elongata_contig54826.12880.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54826.12880.1
Unique Nameprot_H-elongata_contig54826.12880.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length167
Homology
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.450e-69
Identity = 111/168 (66.07%), Postives = 134/168 (79.76%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+  +  LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F  + +Y +NT+ LH  GNR++S R KHI +R+FF++ELV EGKISIHY  TED  AD+ TKH +K
Sbjct:  255 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNK 422          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 3.790e-69
Identity = 107/165 (64.85%), Postives = 130/165 (78.79%), Query Frame = 0
Query:    4 AKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            AK  L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+  +  LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F  + +Y +NT+ LH  GNR++S R KHI +R+FF++ELV EGKISIHY  TED  A + TKH +K
Sbjct:   33 AKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNK 197          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 7.170e-67
Identity = 111/168 (66.07%), Postives = 134/168 (79.76%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+  +  LQGLTA STMEAELVA+AL MK AVFCSNM+ ELG  + F  + +Y +NT+ LH  GNR++S R KHI +R+FF++ELV EGKISIHYV TED  AD+ TKH +K
Sbjct:  476 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 643          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 5.320e-66
Identity = 111/167 (66.47%), Postives = 135/167 (80.84%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLS 166
            M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+  +  LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F  + +Y +NT+ LH  GNR++S R KHI +R+FF++ELV EGKISIHYV+TED  AD+ TKH +
Sbjct:  815 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFN 981          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 3.600e-63
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ +LANAP+  +  LQGLTA STMEAELVA+AL M  AVF SNM+ ELGF + F  + +Y +NT+ LH  GNR++S R KHI +R+FF++ELV EGKISIHYV TED  AD+ TKH +K
Sbjct: 1484 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 1651          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.970e-62
Identity = 104/167 (62.28%), Postives = 129/167 (77.25%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSVLYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            MGAAKHLL YL+GS DFSITYK+GGF L   SDANWGNNPDN +S SSYI+M++ AP+  K  LQ LTA ST+EAELVAAAL MK  +FC+NM+ ELGF   F S     NT+ LHV GN+T+S R KH+ +R+F+++E+V EG+ISIHY+ TED  AD+ TKHL+K
Sbjct:  509 MGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYINTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNK 675          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 3.030e-59
Identity = 100/168 (59.52%), Postives = 126/168 (75.00%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            MGAAK    YLAG+  F I YK+GGF+L  F+D+NWGNNPDNG+STSS++ ML +AP+  K  LQ LT QSTME ELVAAAL +K AVFCSN++ ELGF +    V LY +NT+ LH  GNR+YS   KHI +R+FF++ELV EG+I+IHYV  +  PAD+ TKHL+K
Sbjct:  538 MGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNK 705          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.640e-58
Identity = 111/241 (46.06%), Postives = 133/241 (55.19%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRY----------------------------------------------------------------------------FFVQELVGEGKISIHYVKTEDQPADLATKH 164
            M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+  +  LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F  + +Y +NT+ LH  GNR++S R KHI +R+                                                                            FF++ELV EGKISIHYV TED  AD+ TKH
Sbjct:    1 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 241          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 7.270e-56
Identity = 98/150 (65.33%), Postives = 116/150 (77.33%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIH 149
            MGAAKHLL    G+ DF ITYK+GGF+L  FSDANW +NPDN RSTSSY++M++ AP+  K  LQ LT  STMEAEL+AAALTMK AVFCSNM+ ELGF + FG V LYINNT+ LHV GN+ YS R KHI + +F V+ELV EG I+IH
Sbjct:  354 MGAAKHLL---RGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.570e-55
Identity = 97/168 (57.74%), Postives = 131/168 (77.98%), Query Frame = 0
Query:    1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 167
            MGAAKHLL YL+GS DFSITYK+GGF L   S+AN G+N DNG+S SSYI+M++ AP  LK  LQ LTA ST+EAELVA+AL MK  +FC+NM+ ELGF   F S  L+I++T+ L+V GN+T+S   KH+ +R+F+++++V EG+ISIHY+ TED  AD+ T++L+K
Sbjct:  596 MGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNK 763          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE2.450e-6966.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK0_9PHAE3.790e-6964.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE7.170e-6766.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE5.320e-6666.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE3.600e-6364.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE2.970e-6262.28CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG39_9PHAE3.030e-5959.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCX7_9PHAE4.640e-5846.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N1_9PHAE7.270e-5665.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE1.570e-5557.74Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..149
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 3..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54826contigH-elongata_contig54826:837..1337 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54826.12880.1mRNA_H-elongata_contig54826.12880.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54826 837..1337 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54826.12880.1 ID=prot_H-elongata_contig54826.12880.1|Name=mRNA_H-elongata_contig54826.12880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYI
VMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFD
ESFGSVLYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHY
VKTEDQPADLATKHLSK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like