mRNA_H-elongata_contig54819.12879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54819.12879.1
Unique NamemRNA_H-elongata_contig54819.12879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: G3G4F3_ASCNO (T-complex protein 1 delta subunit (Fragment) n=18 Tax=Fucaceae TaxID=3010 RepID=G3G4F3_ASCNO)

HSP 1 Score: 123 bits (309), Expect = 1.220e-35
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:   10 ISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            ISIVTELRSEHAKGRVGAGINVRKGTISDMYA+HVIQPVLVNSSALKLATECVGMILKIDDVVAV
Sbjct:    3 ISIVTELRSEHAKGRVGAGINVRKGTISDMYADHVIQPVLVNSSALKLATECVGMILKIDDVVAV 67
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: D7FKS7_ECTSI (T-complex protein 1 subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 8.540e-35
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAVM 207
            MNPISIVTELRSEHAKG+VGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAVM
Sbjct:  462 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAVM 530
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: A0A6S9KYX5_HETAK (T-complex protein 1 subunit delta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KYX5_HETAK)

HSP 1 Score: 101 bits (252), Expect = 1.390e-23
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            MNPI++VTELRS H++G  GAGINVR+G +SDMY E V+QP+LV+SSAL LATECV MILKIDDVV+V
Sbjct:  464 MNPIALVTELRSRHSEGEGGAGINVRRGVVSDMYRERVVQPLLVSSSALGLATECVTMILKIDDVVSV 531
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: A0A8K0I3Z2_COCNU (Putative T-complex protein 1 subunit delta n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0I3Z2_COCNU)

HSP 1 Score: 94.4 bits (233), Expect = 3.230e-23
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            +NPI+IVTELR+ HA+G + AGINVRKG I+D+  E+V+QP+LV++SA+ LATECV MILKIDD++ V
Sbjct:   69 LNPIAIVTELRNRHAQGEINAGINVRKGQITDILEENVVQPLLVSTSAITLATECVRMILKIDDIITV 136
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: A0A699PHT6_TANCI (T-complex protein 1 subunit delta (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699PHT6_TANCI)

HSP 1 Score: 93.6 bits (231), Expect = 5.830e-23
Identity = 43/68 (63.24%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            +NPI+IVTELR+ HA+G + AGINVRKG I++++ E+V+QP+LV++SA+ LATECV M+LKIDD+V V
Sbjct:   18 LNPITIVTELRNRHAQGEINAGINVRKGQITNIWEENVVQPLLVSTSAITLATECVRMVLKIDDIVTV 85
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: D5A9J5_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A9J5_PICSI)

HSP 1 Score: 91.3 bits (225), Expect = 9.070e-22
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            +NPI+IVTELR+ HA G +  GINVRKG I+++  E+V+QP+LV++SA+ LATECV MILKIDD+V V
Sbjct:   90 LNPIAIVTELRNRHANGEINTGINVRKGQITNILEENVVQPLLVSTSAISLATECVRMILKIDDIVTV 157
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: A0A0A9YB85_LYGHE (T-complex protein 1 subunit delta n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YB85_LYGHE)

HSP 1 Score: 90.9 bits (224), Expect = 9.210e-22
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVV 198
            + PISIVTELR+ HA   V AG+NVRKG ++DM  E+V+QP+LV++SA++LATECV MILKIDDV+
Sbjct:   76 LQPISIVTELRNAHASNNVNAGVNVRKGCVTDMVEENVVQPLLVSTSAVRLATECVMMILKIDDVI 141
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: A0A835YW20_9STRA (T-complex protein 1 subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW20_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.580e-21
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVA 201
            +NPI  VTELR++H  G  GAGINVR G I+DMY   V+QP+LV+SSA+KLATECVGMILKIDDVVA
Sbjct:  460 LNPIQKVTELRAKHGAGVSGAGINVRSGEITDMYESGVVQPMLVSSSAIKLATECVGMILKIDDVVA 526
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BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: UPI0009E4460C (T-complex protein 1 subunit delta-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4460C)

HSP 1 Score: 89.4 bits (220), Expect = 2.570e-21
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            +NPI IVTELR+ HAKG   AGINVRKG I+++  E+V+QP+LV++SA+ LA ECV MILKIDD+V V
Sbjct:   63 LNPIFIVTELRNRHAKGETNAGINVRKGQITNILEENVVQPLLVSTSAVTLAIECVRMILKIDDIVTV 130
[Close]
BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Match: A0A7S0TCK7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0TCK7_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 3.400e-21
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
            +NPI IVTELR+ H  G    GINVRKGTISDM  E+V+QP+LV SSAL LATECV M+LKIDD++ V
Sbjct:  144 LNPIEIVTELRNVHTAGNAYHGINVRKGTISDMKDENVLQPMLVTSSALSLATECVRMVLKIDDIIPV 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54819.12879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3G4F3_ASCNO1.220e-3598.46T-complex protein 1 delta subunit (Fragment) n=18 ... [more]
D7FKS7_ECTSI8.540e-3598.55T-complex protein 1 subunit delta n=2 Tax=Ectocarp... [more]
A0A6S9KYX5_HETAK1.390e-2373.53T-complex protein 1 subunit delta n=1 Tax=Heterosi... [more]
A0A8K0I3Z2_COCNU3.230e-2364.71Putative T-complex protein 1 subunit delta n=1 Tax... [more]
A0A699PHT6_TANCI5.830e-2363.24T-complex protein 1 subunit delta (Fragment) n=1 T... [more]
D5A9J5_PICSI9.070e-2263.24Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A0A9YB85_LYGHE9.210e-2265.15T-complex protein 1 subunit delta n=1 Tax=Lygus he... [more]
A0A835YW20_9STRA1.580e-2171.64T-complex protein 1 subunit delta n=1 Tax=Tribonem... [more]
UPI0009E4460C2.570e-2164.71T-complex protein 1 subunit delta-like n=1 Tax=Pha... [more]
A0A7S0TCK7_9CHLO3.400e-2167.65Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54819contigH-elongata_contig54819:607..1036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FKS7
Preferred nameCCT4
KEGG koko:K09496,ko:K09500
GOsGO:0000003,GO:0000166,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0007275,GO:0007338,GO:0007339,GO:0008037,GO:0008144,GO:0008150,GO:0009566,GO:0009653,GO:0009791,GO:0009886,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010171,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0017076,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0035036,GO:0035639,GO:0036094,GO:0040032,GO:0042221,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0060341,GO:0061077,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901265,GO:1901363,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0358@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChaperonin Cpn60/TCP-1
Ec32 orthologEc-21_001980.1
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.8723133-CDS-H-elongata_contig54819:606..7521622930893.8723133-CDS-H-elongata_contig54819:606..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54819 607..752 -
1691679614.8248441-CDS-H-elongata_contig54819:606..7521691679614.8248441-CDS-H-elongata_contig54819:606..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54819 607..752 -
1622930893.8882773-CDS-H-elongata_contig54819:972..10361622930893.8882773-CDS-H-elongata_contig54819:972..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54819 973..1036 -
1691679614.8374882-CDS-H-elongata_contig54819:972..10361691679614.8374882-CDS-H-elongata_contig54819:972..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54819 973..1036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54819.12879.1prot_H-elongata_contig54819.12879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54819 607..1036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54819.12879.1

>prot_H-elongata_contig54819.12879.1 ID=prot_H-elongata_contig54819.12879.1|Name=mRNA_H-elongata_contig54819.12879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MNPISIVTELRSEHAKGRVGAGINVRKGTISDMYAEHVIQPVLVNSSALK
LATECVGMILKIDDVVAVM*
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mRNA from alignment at H-elongata_contig54819:607..1036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54819.12879.1 ID=mRNA_H-elongata_contig54819.12879.1|Name=mRNA_H-elongata_contig54819.12879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=430bp|location=Sequence derived from alignment at H-elongata_contig54819:607..1036- (Himanthalia elongata Himel1 dioecious)
ATGAATCCGATCAGCATCGTAACAGAGCTGCGCTCGGAGCATGCCAAGGG
CAGAGTTGGAGCAGGTGAATGCCTTGTGCCAGCCAACGCCGTGTTTCGAA
TCTTAATATTTTTATTTATTTGTATGTACAGAAGCTCTCTCTATAGAGCC
TACTTCCAATATATGGTAACAGCTATCTCTATATACTAATGTAATGTTTT
ATTTAGTTTAGTTTAGTTTAGTTTAGTTTTGCCTTCCTTTTTCACGGTAT
CGGTATTTTTTTTCTTCTTTTTGCGCCCGTTCAGGCATCAACGTGCGCAA
GGGCACAATCAGCGACATGTATGCGGAGCACGTGATTCAACCCGTGCTCG
TGAACTCCAGCGCGCTCAAGCTTGCCACCGAGTGCGTGGGGATGATCCTC
AAGATCGACGACGTAGTAGCCGTCATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig54819:607..1036-

>mRNA_H-elongata_contig54819.12879.1 ID=mRNA_H-elongata_contig54819.12879.1|Name=mRNA_H-elongata_contig54819.12879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig54819:607..1036- (Himanthalia elongata Himel1 dioecious)
ATGAATCCGATCAGCATCGTAACAGAGCTGCGCTCGGAGCATGCCAAGGG
CAGAGTTGGAGCAGATGAATCCGATCAGCATCGTAACAGAGCTGCGCTCG
GAGCATGCCAAGGGCAGAGTTGGAGCAGGCATCAACGTGCGCAAGGGCAC
AATCAGCGACATGTATGCGGAGCACGTGATTCAACCCGTGCTCGTGAACT
CCAGCGCGCTCAAGCTTGCCACCGAGTGCGTGGGGATGATCCTCAAGATC
GACGACGTAGTAGCCGTCATGTAGGCATCAACGTGCGCAAGGGCACAATC
AGCGACATGTATGCGGAGCACGTGATTCAACCCGTGCTCGTGAACTCCAG
CGCGCTCAAGCTTGCCACCGAGTGCGTGGGGATGATCCTCAAGATCGACG
ACGTAGTAGCCGTCATGTAG
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