prot_H-elongata_contig54786.12876.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54786.12876.1
Unique Nameprot_H-elongata_contig54786.12876.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
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BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.530e-41
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 0 
Query:    6 LRLVALCISISVLFPWIDAKRRGRMRIFFLHWASGVMYVLTQFIMSVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQA 99
            LRLVAL ISISVLFPW+ ++RRGRMRIFFLHWASGVMYV++QFIMSVMVLNCW S + +GP I+ LKFWEL VLNLWSISSLAIA+LIA IVQ+
Sbjct:    2 LRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQS 95
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BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.460e-39
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 0 
Query:    6 LRLVALCISISVLFPWIDAKRRGRMRIFFLHWASGVMYVLTQFIMSVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQA 99
            LRLVAL ISISVLFPW+ ++RRGRMRIFFLHWASGVMYV++QFIMSVMVLNCW S + +GP I+ LKF EL  LNLWSISSLAIA+LIA IVQ+
Sbjct:    2 LRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQS 95
[Close]
BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.570e-20
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:   30 MRIFFLHWASGVMYVLTQFIMSVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQA 99
            M IF LHWAS V YV++Q +MSVMV+NCW S   AGPVI++LKF EL  +NLW+ISS+AI++LIA IVQA
Sbjct:    1 MNIFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQA 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRD9_9PHAE2.530e-4179.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI5.460e-3977.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL8_ECTSI1.570e-2065.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 23..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..101
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..97
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..22
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 4..21
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54786contigH-elongata_contig54786:257..1438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54786.12876.1mRNA_H-elongata_contig54786.12876.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54786 257..1438 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54786.12876.1 ID=prot_H-elongata_contig54786.12876.1|Name=mRNA_H-elongata_contig54786.12876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
QVATTLRLVALCISISVLFPWIDAKRRGRMRIFFLHWASGVMYVLTQFIM
SVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQAR
G*
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