mRNA_H-elongata_contig54786.12876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54786.12876.1
Unique NamemRNA_H-elongata_contig54786.12876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.530e-41
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:   16 LRLVALCISISVLFPWIDAKRRGRMRIFFLHWASGVMYVLTQFIMSVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQA 297
            LRLVAL ISISVLFPW+ ++RRGRMRIFFLHWASGVMYV++QFIMSVMVLNCW S + +GP I+ LKFWEL VLNLWSISSLAIA+LIA IVQ+
Sbjct:    2 LRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQS 95
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BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.460e-39
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:   16 LRLVALCISISVLFPWIDAKRRGRMRIFFLHWASGVMYVLTQFIMSVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQA 297
            LRLVAL ISISVLFPW+ ++RRGRMRIFFLHWASGVMYV++QFIMSVMVLNCW S + +GP I+ LKF EL  LNLWSISSLAIA+LIA IVQ+
Sbjct:    2 LRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQS 95
[Close]
BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.570e-20
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   88 MRIFFLHWASGVMYVLTQFIMSVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQA 297
            M IF LHWAS V YV++Q +MSVMV+NCW S   AGPVI++LKF EL  +NLW+ISS+AI++LIA IVQA
Sbjct:    1 MNIFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQA 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54786.12876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRD9_9PHAE2.530e-4179.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI5.460e-3977.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL8_ECTSI1.570e-2065.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54786contigH-elongata_contig54786:257..1438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004170.1
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.4671504-CDS-H-elongata_contig54786:256..4461622930893.4671504-CDS-H-elongata_contig54786:256..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54786 257..446 -
1691679614.668479-CDS-H-elongata_contig54786:256..4461691679614.668479-CDS-H-elongata_contig54786:256..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54786 257..446 -
1622930893.4855552-CDS-H-elongata_contig54786:1322..14381622930893.4855552-CDS-H-elongata_contig54786:1322..1438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54786 1323..1438 -
1691679614.6770368-CDS-H-elongata_contig54786:1322..14381691679614.6770368-CDS-H-elongata_contig54786:1322..1438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54786 1323..1438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54786.12876.1prot_H-elongata_contig54786.12876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54786 257..1438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54786.12876.1

>prot_H-elongata_contig54786.12876.1 ID=prot_H-elongata_contig54786.12876.1|Name=mRNA_H-elongata_contig54786.12876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
QVATTLRLVALCISISVLFPWIDAKRRGRMRIFFLHWASGVMYVLTQFIM
SVMVLNCWISANTAGPVIFMLKFWELAVLNLWSISSLAIAVLIAIIVQAR
G*
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mRNA from alignment at H-elongata_contig54786:257..1438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54786.12876.1 ID=mRNA_H-elongata_contig54786.12876.1|Name=mRNA_H-elongata_contig54786.12876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-elongata_contig54786:257..1438- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGACTACCCTGCGACTAGTGGCGCTTTGCATCAGCATCTCGGT
GCTTTTCCCGTGGATTGACGCGAAGCGACGAGGACGCATGCGCATTTTTT
TTCTCCATTGGGCTAGGTAAGACTAAGACTACTATTAATATTAGTAGTAT
TAGTAGTGTGCTTCTGATAGCATGCTGCAGTGTAGTCTCTTGTGTAGTAG
TAATGGTAATGATAAAGACATTTACTACTATAGTACTAACTTTCTCTTAC
CTATGCAGTATATATATATTAACGACTATAATTAGTAGCAGGGTATAAGG
GATGATAGGCCAAGGAAAACATGTAGGACACATGAAAAGCACAGGGAATG
TCAACCCCAAATCGAGATCGATCTCGATCTGACGGAGCCCGAAATAGAGG
AACTCGCACACACATACACATGCACAGGCAGACAGTCTCCAGGCCGAAGG
CCACAGCTCTTGTCGAGCATCAGCTCCGAGAGAAGGAAGACTCAAGACTA
TAGAGGGCATGGGCTGACGCTTTCAGGGGCAACACTTATTTTACGTCGAG
TGTAAGGCTCGACTAAAGCGCAGAGGCCCCTCACTGGCACCCTGTTGTGT
GTGCCCTCTCGAACCCCGATCGCCACTACCCATTTTTCAGATTCTTCTTG
CCCCTTTTCGATTTCCGCTTCTCCCGTTCTTCAACTCTCTTAAATGCTCT
TAAATGGCATCCTTCAACTCTCTTAAATGGCATCCGCGAAGAATGCACAC
ACTCGCGCACTATCTCGTTAACAGCAATGGTTTCGTCTTAACTGTCCGGT
GCCCCAGTGGACAAGTATGCTTTTGTAGAGAGCGTTTCGCAGCCCTATTA
ACATCATCGTTCGCGCTCTCCCCCCCAATCCCTAAGGCATTTTCTCTCTA
CAAAATCCTTGGATGTTAAACTTTCTTCGTACACGCACGACGGATACATC
CGATCGCCGCTGCTTGCGTTGTTTTGTTTGTTTTTTGTGAAGTGGTGTGA
TGTACGTGTTGACCCAATTCATCATGTCGGTGATGGTGCTGAACTGCTGG
ATCTCCGCGAACACGGCTGGTCCAGTGATCTTCATGCTTAAGTTTTGGGA
GCTGGCGGTGCTTAACCTGTGGTCTATATCGAGCCTGGCGATCGCTGTGC
TCATCGCCATCATAGTCCAGGCGAGGGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig54786:257..1438-

>mRNA_H-elongata_contig54786.12876.1 ID=mRNA_H-elongata_contig54786.12876.1|Name=mRNA_H-elongata_contig54786.12876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig54786:257..1438- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGACTACCCTGCGACTAGTGGCGCTTTGCATCAGCATCTCGGT
GCTTTTCCCGTGGATTGACGCGAAGCGACGAGGACGCATGCGCATTTTTT
TTCTCCATTGGGCTAGCAGGTGGCGACTACCCTGCGACTAGTGGCGCTTT
GCATCAGCATCTCGGTGCTTTTCCCGTGGATTGACGCGAAGCGACGAGGA
CGCATGCGCATTTTTTTTCTCCATTGGGCTAGTGGTGTGATGTACGTGTT
GACCCAATTCATCATGTCGGTGATGGTGCTGAACTGCTGGATCTCCGCGA
ACACGGCTGGTCCAGTGATCTTCATGCTTAAGTTTTGGGAGCTGGCGGTG
CTTAACCTGTGGTCTATATCGAGCCTGGCGATCGCTGTGCTCATCGCCAT
CATAGTCCAGGCGAGGGGATAATGGTGTGATGTACGTGTTGACCCAATTC
ATCATGTCGGTGATGGTGCTGAACTGCTGGATCTCCGCGAACACGGCTGG
TCCAGTGATCTTCATGCTTAAGTTTTGGGAGCTGGCGGTGCTTAACCTGT
GGTCTATATCGAGCCTGGCGATCGCTGTGCTCATCGCCATCATAGTCCAG
GCGAGGGGATAA
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