mRNA_H-elongata_contig54776.12874.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54776.12874.1
Unique NamemRNA_H-elongata_contig54776.12874.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54776.12874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54776contigH-elongata_contig54776:1076..2425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002270.1
Exons2
Model size585
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54776.12874.1prot_H-elongata_contig54776.12874.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54776 1156..2217 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.2453449-UTR-H-elongata_contig54776:1075..11551622930893.2453449-UTR-H-elongata_contig54776:1075..1155Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54776 1076..1155 +
1691679614.6068249-UTR-H-elongata_contig54776:1075..11551691679614.6068249-UTR-H-elongata_contig54776:1075..1155Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54776 1076..1155 +
1622930893.2945478-UTR-H-elongata_contig54776:2217..24251622930893.2945478-UTR-H-elongata_contig54776:2217..2425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54776 2218..2425 +
1691679614.637072-UTR-H-elongata_contig54776:2217..24251691679614.637072-UTR-H-elongata_contig54776:2217..2425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54776 2218..2425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.2650437-CDS-H-elongata_contig54776:1155..12771622930893.2650437-CDS-H-elongata_contig54776:1155..1277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54776 1156..1277 +
1691679614.6175413-CDS-H-elongata_contig54776:1155..12771691679614.6175413-CDS-H-elongata_contig54776:1155..1277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54776 1156..1277 +
1622930893.2794137-CDS-H-elongata_contig54776:2042..22171622930893.2794137-CDS-H-elongata_contig54776:2042..2217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54776 2043..2217 +
1691679614.627249-CDS-H-elongata_contig54776:2042..22171691679614.627249-CDS-H-elongata_contig54776:2042..2217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54776 2043..2217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54776.12874.1

>prot_H-elongata_contig54776.12874.1 ID=prot_H-elongata_contig54776.12874.1|Name=mRNA_H-elongata_contig54776.12874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MIARRLTLPPGHPRWNSYEERQAEQEGSFKPEDSRRANSINVRRTDAPKF
AVGNETAEIWGRPKKYQTETDLYAQQSKPRIGSRVRFTTDGRSTRRFR*
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mRNA from alignment at H-elongata_contig54776:1076..2425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54776.12874.1 ID=mRNA_H-elongata_contig54776.12874.1|Name=mRNA_H-elongata_contig54776.12874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig54776:1076..2425+ (Himanthalia elongata Himel1 dioecious)
CCACAGCTGCAGTGATCAGGGTGCGCAGATCAAAACGAGGGATCGACGGA
CTGCAGGAACTCCGGGATCAAAGGGAACTCATGATAGCCAGGCGACTAAC
GCTTCCCCCCGGACATCCACGGTGGAACTCGTACGAGGAGAGACAGGCGG
AGCAGGAGGGGTCGTTCAAACCGGAGGACAGCCGTCGTGCGAACAGTATC
AAGTGAGCACACGCTTCGTGATAATATATGTACCGGTATGTTATAAACAT
TTCAATGACATGTGTACAGTACAACAATGGATCATTTTAAAATACTGGAC
AGGATTTTTAAAATATTAGTAGTTTTTGTGTGTTTGTTTTCGTTTTTGGT
TAAAAAACATTTGTTTTTGAAAAGAGTGTCGCGTACAAACTACCGTACCG
ACATCGTATGTATGTATAAAATCGCCCAATAACCCGAGCCGCATACATAC
GTACGTACGCCAGCACGCGACCAGAACGAGCGAGAATTGCTCGAAACATT
TCTGCCCATGCACGCCTCCTCTGTAAGCTGACACCAGGAGTACCATGAGC
TCGTTGCTGGCCACAGCGTCCCTGTTTGCTTTGGCCCATGCCATCGGATG
ATAGAACCCCTCCTTGATACTTGATACTTGATACTACTGGTGTTACTAAA
CGTTCCGACTTTATTTCTGAATAATACAACTGTGTTACAGTACACACGAC
CAGTCAATATTATTATTGCACACCCACACCGTCACTGTCCGTCGTTTACG
TTATATCTTCACTTTAATTATATAATGCCTGTTGTGTATTCAAGAGTGCC
AGTGCCTACAAAAAACTTTCGCACAACAACGAACAGGTCTGGAAGTAATG
GGCGTGCGTTGCACAAGCAAGCGCGAAACGTCTAAATCGCCGTCTCCGCT
TCCCCCGCCCCTCGCCCCCGCCCCCGCCCCCCACCTCTGCTGATCCGTTA
ATTCGTCGCATTACTAGCGTGCGACGAACGGACGCCCCGAAGTTCGCCGT
CGGAAACGAAACCGCGGAGATCTGGGGTCGACCCAAGAAGTACCAAACGG
AAACCGACCTATACGCACAACAGTCGAAGCCACGGATTGGCTCTAGGGTG
AGGTTTACGACAGACGGCAGGAGCACAAGGCGATTCCGCTAATAATAAAG
CAGCGTGCCTCTTCGCCATTTAGGGATCGCGTGATGCATTTCACATTCAT
TCGAAGAGAGAAGATAAACCATTAACAAGCGCCCGCGTGGGGTGAGTACG
TTGATGCGTCCTCAAACCCCAAAAAATAACGGGTCGGGAGAAACAATAGG
TACACACAGGACTACTGTGTATGATGTATTTTGCGGTGAAAGTTTGGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig54776:1076..2425+

>mRNA_H-elongata_contig54776.12874.1 ID=mRNA_H-elongata_contig54776.12874.1|Name=mRNA_H-elongata_contig54776.12874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig54776:1076..2425+ (Himanthalia elongata Himel1 dioecious)
ATGATAGCCAGGCGACTAACGCTTCCCCCCGGACATCCACGGTGGAACTC
GTACGAGGAGAGACAGGCGGAGCAGGAGGGGTCGTTCAAACCGGAGGACA
GCCGTCGTGCGAACAGTATCAAATGATAGCCAGGCGACTAACGCTTCCCC
CCGGACATCCACGGTGGAACTCGTACGAGGAGAGACAGGCGGAGCAGGAG
GGGTCGTTCAAACCGGAGGACAGCCGTCGTGCGAACAGTATCAACGTGCG
ACGAACGGACGCCCCGAAGTTCGCCGTCGGAAACGAAACCGCGGAGATCT
GGGGTCGACCCAAGAAGTACCAAACGGAAACCGACCTATACGCACAACAG
TCGAAGCCACGGATTGGCTCTAGGGTGAGGTTTACGACAGACGGCAGGAG
CACAAGGCGATTCCGCTAACGTGCGACGAACGGACGCCCCGAAGTTCGCC
GTCGGAAACGAAACCGCGGAGATCTGGGGTCGACCCAAGAAGTACCAAAC
GGAAACCGACCTATACGCACAACAGTCGAAGCCACGGATTGGCTCTAGGG
TGAGGTTTACGACAGACGGCAGGAGCACAAGGCGATTCCGCTAA
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