mRNA_H-elongata_contig54774.12873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54774.12873.1
Unique NamemRNA_H-elongata_contig54774.12873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.200e-97
Identity = 175/278 (62.95%), Postives = 201/278 (72.30%), Query Frame = 1 
Query:    1 QSDAAARAAAKSKAVSLGRIKA-VAADGAGARERKFVPFPDQARPPPPRVTKRVKTWRDVEAMQAQVFSLKPQKESNVRKISVEKRAMEDFVGFLKETGFRNHRCALLFGRINAATKAIKVEAMFEPPQGAADSSIDGDRDNSGSYFDSSALLEXXXXXXXXAREHFMAARDVITAAAVQLMSMADKGRDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGLLAEKQPEPASDRVTTTAVVREDGTETRTPETLGLICNVAIVQHEGVLRTR 831
            +SD+AARAAAK+K+ +LGR+KA V  D  G    KFVPFP  ARPPPPR TKRVKTW+D+EAMQAQ FSLKPQK+SNV+KISVE+ AM+DFVG+LK+TG R HRCALLFGR++ +T  +K                                           REHFMAA DV TAAA+QLMSMADKG++EGVLVATVTVPVNAT GE+ATEAFSVSNQTVQMFSEG+L   QPEP + RV TTA V+E   ET TPETLGLICNVAIVQHEGVL+TR
Sbjct:  153 KSDSAARAAAKAKSDALGRMKAAVVGDKTGGS--KFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVGYLKQTGLRKHRCALLFGRVSPSTNGVK-------------------------------------------REHFMAAADVATAAALQLMSMADKGKEEGVLVATVTVPVNATTGEMATEAFSVSNQTVQMFSEGVLGHHQPEPTAGRVATTAAVKEGSKETTTPETLGLICNVAIVQHEGVLQTR 385
[Close]
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Match: H3GFY1_PHYRM (Uridine kinase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFY1_PHYRM)

HSP 1 Score: 87.4 bits (215), Expect = 1.050e-15
Identity = 66/217 (30.41%), Postives = 108/217 (49.77%), Query Frame = 1 
Query:  199 FSLKPQKESNVRKISVEKRAMEDFVGFLKETGFRNHRCALLFGRINAATKAIKVEAMFEPPQGAADSSI----DGDRDNSGSYFDSSALLEXXXXXXXXARE----HFMAARDVITAAAVQLMSMADKGRDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGLLAEKQPEPASDRVTTTAVVREDGTETRTPETLGLICNVAIVQHEGVLR 825
            F +  QKE  V K+ ++  +  DF  +L++  F+  RC  L+G ++A TK   VE ++EPPQ           D D D   +  ++    +         RE    HF +AR+V+ AA +Q    AD G  E + + T+ V ++  +G+ + EAF VS+Q V+MF+ G+LAE +  P +  V  T  V  +    +  +    +C V ++ HE  LR
Sbjct:  137 FKISAQKEPQVAKVHLDGASCNDFQAYLRQFAFQQSRCGWLYGSVDAETKEATVEFIYEPPQEGNPYGFEVLDDPDADKVDAVAEALGFEKVGWVFSHPPREDEDFHF-SAREVLLAAQLQ----ADAGGKESLFL-TLKVTLDK-EGQASFEAFQVSDQCVEMFAAGVLAENEQNPKACAVNDTFTVLVEAKPAKEVDNNFFLCVVPVLPHESTLR 346
[Close]
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Match: A0A5D6XRK4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRK4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.200e-13
Identity = 61/218 (27.98%), Postives = 105/218 (48.17%), Query Frame = 1 
Query:  199 FSLKPQKESNVRKISVEKRAMEDFVGFLKETGFRNHRCALLFGRINAATKAIKVEAMFEPPQGAADSSIDGDRDNSGSYFDSSALL----EXXXXXXXXARE----HFMAARDVITAAAVQLMSMADKGRDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGLLAEKQPEPASDRVTTTAVVREDGTETRTPETLGLICNVAIVQHEGVLRT 828
            + +  QK ++  K+ ++  +  DF  +L++  F+  RC  L+G ++A TK + V+ ++EPPQ       +   D      D+ A      +         RE    HF +A +V+ AA +Q    AD G  + + V T+ V ++  DG+ + EAF VS+Q V+MFS G L E + +P S  +  T     +     T +    +C V +  HE  L++
Sbjct:  137 YKISAQKSAHAAKVVLDAASCNDFQAYLRQFAFQQSRCGWLYGSVDAETKEVTVDFIYEPPQHGTPHGFEVLDDPHAERVDAVAEALGREKVGWVFSHPPREDDTFHF-SAHEVLLAAQLQ----ADAGGSDSLFV-TLKVTLDK-DGQASFEAFQVSDQCVEMFSAGALVEHEEDPKSCGIAATFTALVEAKPAPTVDNNFFLCVVPVATHESGLKS 347
[Close]
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Match: A0A329S327_9STRA (MPN domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=A0A329S327_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.790e-12
Identity = 61/216 (28.24%), Postives = 103/216 (47.69%), Query Frame = 1 
Query:  199 FSLKPQKESNVRKISVEKRAMEDFVGFLKETGFRNHRCALLFGRINAATKAIKVEAMFEPPQGAADSSI----DGDRDNSGSYFDSSALLEXXXXXXXXARE----HFMAARDVITAAAVQLMSMADKGRDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGLLAEKQPEPASDRVTTTAVVREDGTETRTPETLGLICNVAIVQHEGVL 822
            F +  QKE  V K+ ++  +  DF  +L++  F+  RC  L+G ++A TK + V+ ++EPPQ           D + D   +  ++    +         RE    HF +AR+++ AA +Q    AD G  +G L  T+ V ++   G+ + EAF +S+Q V+MF+ G L E +  P +  V  T     +       +    +C V +V HE  L
Sbjct:  137 FKISAQKEPQVAKVHLDGASCNDFQAYLRQFAFQQSRCGWLYGSVDAETKEVTVDFIYEPPQEGNPYGFEVLDDPNADKVDAVAEALGYEKVGWVFSHPPREDDDFHF-SAREILLAAQLQ----ADAG-GKGSLFLTLKVTLDK-QGQASFEAFQISDQCVEMFAAGALMENEQNPKACAVNDTFTALVEAKPATEVDNNFFLCVVPVVPHESPL 345
[Close]
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Match: B5Y563_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y563_PHATC)

HSP 1 Score: 61.6 bits (148), Expect = 3.900e-7
Identity = 65/232 (28.02%), Postives = 103/232 (44.40%), Query Frame = 1 
Query:  163 TWRDVEAMQAQV-FSLKPQKESNVRKISVEKRAMEDFVGFLKETGFRNHRCALLFGRI-------NAATKAIKVEAMFEPPQGAADSSIDG-------DRDNSGSYFDSSALLEXXXXXXXXAREHF-MAARDVITAAAVQLMSMADKGRDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGLLAEKQPEPASDRVTTTAVVREDGTETRTPETLGLICNVAIVQH 810
            T  D  A+ +Q  F ++ Q+++   K+S++  ++ +F  +L+   F+  RC  L+G+           TK + VEA++EPPQ     S +G         +      +   L           R+ + ++A + I AA  QL +    G  E     TVTV     DG+VA EAF VS Q + M +E  L      P   +V  T    ++G  + T ET   +  V IVQH
Sbjct:  152 TLNDFIALDSQFEFKIQRQEKATTSKVSLDVPSISNFQTYLQRFQFQRKRCGFLYGKFVKEDESDEKPTKVL-VEAIYEPPQEINPDSAEGFTLEDDPQEEEVNQLAEWLGLQRVGWVFGHAPRQGYVLSAAETILAAEFQLEAA---GGVEETPFCTVTVAPKL-DGQVAVEAFQVSQQCMAMVAEEALQVDPDNPQLCKVNETFTAIQEGKASPTVETAFFLTVVPIVQH 378
[Close]
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Match: A0A662YIT1_9STRA (Ubiquitin-like domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIT1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.760e-6
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  199 FSLKPQKESNVRKISVEKRAMEDFVGFLKETGFRNHRCALLFGRINAATKAIKVEAMFEPPQ 384
            F L  QKE +V K+ ++  +  DF G+L++  F+  RC  L+G ++A +K + V+ ++EPPQ
Sbjct:  137 FKLSAQKEPHVTKVYLDNASCNDFQGYLRQFAFQQSRCGWLYGTVDAESKEVTVDFIYEPPQ 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54774.12873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LMW6_ECTSI1.200e-9762.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3GFY1_PHYRM1.050e-1530.41Uridine kinase n=1 Tax=Phytophthora ramorum TaxID=... [more]
A0A5D6XRK4_9STRA7.200e-1327.98Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A329S327_9STRA1.790e-1228.24MPN domain-containing protein n=19 Tax=Phytophthor... [more]
B5Y563_PHATC3.900e-728.02Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A662YIT1_9STRA9.760e-637.10Ubiquitin-like domain-containing protein (Fragment... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54774contigH-elongata_contig54774:923..3854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue3e-15
Seed eggNOG ortholog164328.Phyra74664
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K14015
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,ko04141,map00240,map00983,map01100,map04141
KEGG ModuleM00400,M00403
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031625,GO:0032182,GO:0033554,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.Nuclear pore localisation protein NPL4
EggNOG OGs3QAE2@4776,COG0572@1,COG5100@1,KOG2834@2759,KOG4203@2759
EC2.7.1.48
COG Functional cat.UY
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNuclear pore localisation protein NPL4
Ec32 orthologEc-02_003900.1
Exons6
Model size834
Cds size834
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54774.12873.1prot_H-elongata_contig54774.12873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54774 923..3854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.0847619-CDS-H-elongata_contig54774:922..10501622930893.0847619-CDS-H-elongata_contig54774:922..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 923..1050 +
1691679614.5348473-CDS-H-elongata_contig54774:922..10501691679614.5348473-CDS-H-elongata_contig54774:922..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 923..1050 +
1622930893.1047006-CDS-H-elongata_contig54774:1437..15841622930893.1047006-CDS-H-elongata_contig54774:1437..1584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 1438..1584 +
1691679614.5485651-CDS-H-elongata_contig54774:1437..15841691679614.5485651-CDS-H-elongata_contig54774:1437..1584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 1438..1584 +
1622930893.1234653-CDS-H-elongata_contig54774:2197..24081622930893.1234653-CDS-H-elongata_contig54774:2197..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 2198..2408 +
1691679614.5588763-CDS-H-elongata_contig54774:2197..24081691679614.5588763-CDS-H-elongata_contig54774:2197..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 2198..2408 +
1622930893.152066-CDS-H-elongata_contig54774:2979..31141622930893.152066-CDS-H-elongata_contig54774:2979..3114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 2980..3114 +
1691679614.5695484-CDS-H-elongata_contig54774:2979..31141691679614.5695484-CDS-H-elongata_contig54774:2979..3114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 2980..3114 +
1622930893.1755197-CDS-H-elongata_contig54774:3387..34821622930893.1755197-CDS-H-elongata_contig54774:3387..3482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 3388..3482 +
1691679614.58002-CDS-H-elongata_contig54774:3387..34821691679614.58002-CDS-H-elongata_contig54774:3387..3482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 3388..3482 +
1622930893.2002068-CDS-H-elongata_contig54774:3736..38541622930893.2002068-CDS-H-elongata_contig54774:3736..3854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 3737..3854 +
1691679614.595514-CDS-H-elongata_contig54774:3736..38541691679614.595514-CDS-H-elongata_contig54774:3736..3854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54774 3737..3854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54774.12873.1

>prot_H-elongata_contig54774.12873.1 ID=prot_H-elongata_contig54774.12873.1|Name=mRNA_H-elongata_contig54774.12873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
QSDAAARAAAKSKAVSLGRIKAVAADGAGARERKFVPFPDQARPPPPRVT
KRVKTWRDVEAMQAQVFSLKPQKESNVRKISVEKRAMEDFVGFLKETGFR
NHRCALLFGRINAATKAIKVEAMFEPPQGAADSSIDGDRDNSGSYFDSSA
LLEAAAAAAASAREHFMAARDVITAAAVQLMSMADKGRDEGVLVATVTVP
VNATDGEVATEAFSVSNQTVQMFSEGLLAEKQPEPASDRVTTTAVVREDG
TETRTPETLGLICNVAIVQHEGVLRTR*
back to top

mRNA from alignment at H-elongata_contig54774:923..3854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54774.12873.1 ID=mRNA_H-elongata_contig54774.12873.1|Name=mRNA_H-elongata_contig54774.12873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2932bp|location=Sequence derived from alignment at H-elongata_contig54774:923..3854+ (Himanthalia elongata Himel1 dioecious)
CAGAGCGACGCGGCAGCCCGGGCGGCCGCGAAGTCAAAGGCAGTCTCCTT
GGGAAGGATCAAGGCCGTCGCGGCAGATGGCGCCGGGGCCCGCGAGAGAA
AATTCGTGCCGTTTCCCGACCAAGCCCGGTACGTAGGTGCGCACCGAGCG
CAAGCCGTAGGTACACACCTCGAGAGCCGAATGGCCCACGGGTGGACGCC
GAAGCCGCGAGAAGCGCGTGCGCTATATTCTACCTTCATCTTTCCCATCA
TGGCTGAAGAACTTCCACCCCCGCCGCTCTGGGCCTAACCTAGCCTAGCC
TCTTTTTTTTTAATACTTTCTACATCAAAACCGGTACCCCCCGCAGTAAA
CCAGTAAAATATGTTCGAGGGCATTTGCATGAGTTCGTATTTGTTATGAG
TGATGTGTTATCGTTGATTCAACAAACATCGTGTGGATATTCCCTTCGAC
ATGTCCCTTTTTCCCTTCTCCCCTCCTCGCCTTATCTTTCCCTCCCTTTT
GGCGCGTGTGTGAAGGCCGCCCCCTCCGCGGGTGACGAAGCGCGTGAAGA
CGTGGCGGGACGTCGAAGCGATGCAAGCGCAGGTGTTCTCCCTCAAGCCC
CAGAAGGAATCCAACGTGAGGAAGATAAGCGTGGAGAAGCGCGCCATGGA
AGACTTTGTCGGGTGAGGGGACGCTGACATACGCGGCACGGCTTGGTGCT
AGTGTGCTGCACAAGATATAATAATACTGTTATCGTGCTCCTGGAAAGTG
TTGTTGCCGTATGGGGGCATCGTTAGCGCAAAGGATGAGTTGTCAGCTAT
CGTCAAAACCGGTGTCTGTACGACCGCCGCCGTCGGTGCCGCCGCGGCTA
CCACTGACTATTCTTGCTGGTCGAGAACCCTCTTTGTGGTACCTAAAGCG
TGGTCGGTAGTGGCGCCCGTTGAATGTACAATATGTAGTCTGGGTACCCG
GTGTGTTTAAGTAACCATGGCATGTTGGGATTGGTGTAGCAAACGCAAGG
ATGATGACCCAAAAGCTGGTATCCTCATCCTTGTGAAACATAGCCTGGCG
AATGGAAATCCTGTATCGTCTATCGTTCCGTCCCGGCATTGTTGGGATTT
GTGGGTCTATCTATGTTAGGATGCGACATGCGCTTAATATAAGACCCCCG
CCTCCTCCCCCCGCGCCCCTCCGTTAATAAAAATAAGTGATACTATGTAT
AGTAGTGGTATCAGTTCAAGTATTTGTTTTAATCAGCGCCGCTCCGTCGT
CGCTGAACCGACTCATCCATCCCAGGTTCCTCAAGGAAACCGGGTTCAGG
AACCACAGATGCGCTCTGCTGTTCGGCAGGATCAACGCGGCCACCAAGGC
CATCAAAGTGGAGGCCATGTTCGAGCCACCGCAGGGCGCCGCCGACTCTT
CCATTGACGGCGACCGTGACAACAGCGGGTCGTACTTCGACTCGTCTGCG
CTTTTGGAGGCTGCTGCTGCTGCTGCTGCTTCTGCTGTTGCTACCGTGGA
GTGCGCCGCCTCTAGCAATGGCGGTGGAGATGGAGCGGGAAAAAGCGGCG
AGGAGCCGCTGTCAGAAGTGGCGGCGGAGGTTATCCGCGCAGTACGGGTT
GCGGAACTGCTGGGCCTCCGCTTGGTCGGATGCTGCTTGAGCCACGGCAA
GGTGAGACACGTACTCTTTAAGTTGCGTCGAGCTACGCGTTGCACCATAT
GTTCTTATTTTTCTAAGCGTACTGCGTGTACGGAGAATATGGGGAGCGGG
CGAGGGGTATATATCCCACAGGAAGCGCATATCTTGTTCTGTGTTTTGTA
CCGCAGTAGTTATAGGTCCATCGATTTGATTCCTGGGGTACACGGGGAAG
GGGGGGTTGGGTTCCTTCTAACCTTGGACGAAGAACGTCTTTCAAAAGTA
AACACGCGGTAGCTTCACTACGGCTGTTCCACAAGTTGCCCCCCCCCCCA
CACAAACACCTTTAGTTGACTCGTACACCTTTTAGGTTATTTTTCCACTC
GTTCATTTGTTTTCTGATTAAAATCAAACACCGGCCCGGTAATTGTTTTG
CGTGAAGAGGGAGCATTTCATGGCAGCCAGGGACGTCATAACCGCGGCCG
CCGTTCAGCTAATGTCGATGGCGGACAAGGGTAGGGACGAAGGCGTGTTG
GTGGCGACCGTTACGGTGCCCGTCAACGCGACAGACGGTGAGGTGGGTGC
CCCATAAGAAATGACAGACGTCGCGCCCCAACCGTGGTTGATCCACCCCC
TTCCCTCTCTCCTTGATCCTCTGGATGGCGAAGGCTGCGTTGATTCTGTT
TGAATATATCGTGCTGATTCCACGGAAAACACAAGAGTCAAGACCTCGTC
AAAGGAGTACGTACATAAGAATTAAGTCTACTGTTTATTCGTTACGGACG
ACGATGTGCGATACGTCTTAAAATTATTATCTTGGGTGTTTCCGGGCACC
TAATGGTAACCGCAGGTTGCGACGGAGGCCTTCAGCGTGAGCAACCAGAC
CGTGCAGATGTTCAGCGAGGGCTTGCTTGCGGAAAAACAGCCAGAACCTG
CGTCAGACAGGTCGGTCACACTCGCGTAGTACCAATTCGTTTTAGACATT
TTGTTTAAAATAGCGAAACGAAGGGTGCCTACACAGAAACTCGCGTCGCC
AACTCGTCCATCGTGCTCTCTTTCTGGATGTGGGCTTGGCTCTGTCTTTT
TTCTGCCGTTGATTTTCTTGAGTTGCCCCCGTATTTCTCATTCTCCCCCC
CCCTCCCCTTCCCTTCCTCCCTCCCTCCCTTCCCGCGAAAAAACGCCTCC
TATATGCGTGCAAGAGTGACAACGACCGCCGTCGTAAGAGAGGACGGCAC
TGAAACGAGAACGCCGGAGACGCTCGGACTGATCTGCAATGTCGCTATCG
TTCAGCACGAAGGAGTGCTACGAACCAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54774:923..3854+

>mRNA_H-elongata_contig54774.12873.1 ID=mRNA_H-elongata_contig54774.12873.1|Name=mRNA_H-elongata_contig54774.12873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig54774:923..3854+ (Himanthalia elongata Himel1 dioecious)
CAGAGCGACGCGGCAGCCCGGGCGGCCGCGAAGTCAAAGGCAGTCTCCTT
GGGAAGGATCAAGGCCGTCGCGGCAGATGGCGCCGGGGCCCGCGAGAGAA
AATTCGTGCCGTTTCCCGACCAAGCCCGCAGAGCGACGCGGCAGCCCGGG
CGGCCGCGAAGTCAAAGGCAGTCTCCTTGGGAAGGATCAAGGCCGTCGCG
GCAGATGGCGCCGGGGCCCGCGAGAGAAAATTCGTGCCGTTTCCCGACCA
AGCCCGGCCGCCCCCTCCGCGGGTGACGAAGCGCGTGAAGACGTGGCGGG
ACGTCGAAGCGATGCAAGCGCAGGTGTTCTCCCTCAAGCCCCAGAAGGAA
TCCAACGTGAGGAAGATAAGCGTGGAGAAGCGCGCCATGGAAGACTTTGT
CGGGCCGCCCCCTCCGCGGGTGACGAAGCGCGTGAAGACGTGGCGGGACG
TCGAAGCGATGCAAGCGCAGGTGTTCTCCCTCAAGCCCCAGAAGGAATCC
AACGTGAGGAAGATAAGCGTGGAGAAGCGCGCCATGGAAGACTTTGTCGG
GTTCCTCAAGGAAACCGGGTTCAGGAACCACAGATGCGCTCTGCTGTTCG
GCAGGATCAACGCGGCCACCAAGGCCATCAAAGTGGAGGCCATGTTCGAG
CCACCGCAGGGCGCCGCCGACTCTTCCATTGACGGCGACCGTGACAACAG
CGGGTCGTACTTCGACTCGTCTGCGCTTTTGGAGGCTGCTGCTGCTGCTG
CTGCTTCTGCTGTTCCTCAAGGAAACCGGGTTCAGGAACCACAGATGCGC
TCTGCTGTTCGGCAGGATCAACGCGGCCACCAAGGCCATCAAAGTGGAGG
CCATGTTCGAGCCACCGCAGGGCGCCGCCGACTCTTCCATTGACGGCGAC
CGTGACAACAGCGGGTCGTACTTCGACTCGTCTGCGCTTTTGGAGGCTGC
TGCTGCTGCTGCTGCTTCTGCTAGGGAGCATTTCATGGCAGCCAGGGACG
TCATAACCGCGGCCGCCGTTCAGCTAATGTCGATGGCGGACAAGGGTAGG
GACGAAGGCGTGTTGGTGGCGACCGTTACGGTGCCCGTCAACGCGACAGA
CGGTGAGAGGGAGCATTTCATGGCAGCCAGGGACGTCATAACCGCGGCCG
CCGTTCAGCTAATGTCGATGGCGGACAAGGGTAGGGACGAAGGCGTGTTG
GTGGCGACCGTTACGGTGCCCGTCAACGCGACAGACGGTGAGGTTGCGAC
GGAGGCCTTCAGCGTGAGCAACCAGACCGTGCAGATGTTCAGCGAGGGCT
TGCTTGCGGAAAAACAGCCAGAACCTGCGTCAGACAGGTTGCGACGGAGG
CCTTCAGCGTGAGCAACCAGACCGTGCAGATGTTCAGCGAGGGCTTGCTT
GCGGAAAAACAGCCAGAACCTGCGTCAGACAGAGTGACAACGACCGCCGT
CGTAAGAGAGGACGGCACTGAAACGAGAACGCCGGAGACGCTCGGACTGA
TCTGCAATGTCGCTATCGTTCAGCACGAAGGAGTGCTACGAACCAGGTGA
AGTGACAACGACCGCCGTCGTAAGAGAGGACGGCACTGAAACGAGAACGC
CGGAGACGCTCGGACTGATCTGCAATGTCGCTATCGTTCAGCACGAAGGA
GTGCTACGAACCAGGTGA
back to top