mRNA_H-elongata_contig54763.12870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54763.12870.1
Unique NamemRNA_H-elongata_contig54763.12870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A6H5K1H6_9PHAE (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1H6_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.000e-61
Identity = 106/159 (66.67%), Postives = 128/159 (80.50%), Query Frame = 1
Query:    1 FSISSHAKVFTPGQLLAMSYEGSKLQISVDRVEIATIDP-DGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKPPGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            F ++   +VFTP Q+LAM++EGSKL+I V  VE+ATID  +GQ       ++  R+ HG+L+  T IEW KPPG ++N EG  G G QN+IFRADFDFAKLGIGGLGKEF+QIFRRAFASR+F+S VVREMGI+HVRGMLL+GPPGCGKTLIARQIGKV
Sbjct:   57 FKVNFSHQVFTPNQVLAMTFEGSKLEIVVQSVEVATIDGREGQG-----FTSTHRNTHGMLNNQTDIEWTKPPGSMVNLEGQTGPGGQNIIFRADFDFAKLGIGGLGKEFSQIFRRAFASRIFNSAVVREMGISHVRGMLLYGPPGCGKTLIARQIGKV 210          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: B8BY63_THAPS (Vesicle-fusing ATPase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY63_THAPS)

HSP 1 Score: 154 bits (390), Expect = 8.270e-41
Identity = 85/162 (52.47%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 FSISSHAKVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKPPGG----LLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            F ++   +VF  GQ LAM +EG+KL++++  V    ID DG  P     S+   +  G L A T + + +P G     L+  + VGGSG  N IF +DFDF KLGIGGL  EFNQIFRRAFASR++ + V++++GI+HVRGMLL+GPPGCGKTLIARQIGKV
Sbjct:  132 FLLNFEGQVFEVGQTLAMDFEGTKLELTITAVN--QIDLDGGKPSAELVSSDDATRVGQLLAPTVLAFSRPHGSNLVALVGNKVVGGSGGANTIFLSDFDFEKLGIGGLDAEFNQIFRRAFASRIWPAHVIKQLGISHVRGMLLYGPPGCGKTLIARQIGKV 291          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A397CNA4_9STRA (Vesicle-fusing ATPase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CNA4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.670e-39
Identity = 81/153 (52.94%), Postives = 101/153 (66.01%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKP---PGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGK 471
            +VF  GQLL +  +G+ +++SV +V++    PDG AP   Q      S  GL   G+A+ + K    P  L+N     G G  N IF+ DFDF+KLGIGGL KEFN IFRRAFASR+F   ++ +MGI HVRGMLL GPPGCGKTLIARQIGK
Sbjct:  145 QVFAAGQLLVVDVDGAPVKLSVSKVDLLA-PPDGVAPSSHQ------STMGLFVKGSALVFTKSKDAPVKLVNQGATAGGG--NRIFKPDFDFSKLGIGGLDKEFNDIFRRAFASRVFPPAIIEKMGIKHVRGMLLFGPPGCGKTLIARQIGK 288          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A3L6VT92_9STRA (Vesicle-fusing ATPase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VT92_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.360e-38
Identity = 83/154 (53.90%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKP---PGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            +VF  GQLL +  +G+ +++SV +VE+    PDG AP   Q      S  GL   G+A+ + K    P  L+N     G G  N IF+ DFDF+KLGIGGL KEFN IFRRAFASR+F   ++ +MGI HVRGMLL GPPGCGKTLIARQIGKV
Sbjct:  145 QVFAAGQLLVVDVDGAPVKLSVSKVELLA-PPDGVAPSSHQ------STMGLFVKGSALVFTKSKDAPVKLVNQGATAGGG--NRIFKPDFDFSKLGIGGLDKEFNDIFRRAFASRVFPPAIIEKMGIKHVRGMLLFGPPGCGKTLIARQIGKV 289          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A835YZT3_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT3_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.750e-38
Identity = 82/150 (54.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   25 VFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKPPGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            +F PGQ LAM + G+KL++ V+  E A    DG+ P             GL    TAI W  P G  L   G   SGA   I   DFDF KLGIGGL  EFNQIFRRAFASR++ + +V +MGINHVRGMLL+GPPGCGKTL+ARQIGKV
Sbjct:  128 MFMPGQELAMDHNGAKLKVIVEAAEHAI--NDGRKPRF-----------GLFLEATAINWSSPSGASLRLSGQK-SGAMRTIIPKDFDFVKLGIGGLNNEFNQIFRRAFASRIYPTHLVEQMGINHVRGMLLYGPPGCGKTLVARQIGKV 263          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A397A2Y9_9STRA (Vesicle-fusing ATPase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A2Y9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.560e-37
Identity = 82/154 (53.25%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKP---PGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            +VF  GQLL +  +G+ +++SV +V++    PDG AP   Q      S  GL   G+A+ + K    P  L+N     G G  N IF+ DFDF+KLGIGGL KEFN IFRRAFASR+F   ++ +MGI HVRGMLL GPPGCGKTLIARQIGKV
Sbjct:  145 QVFAAGQLLVVDVDGAPVKLSVSKVDLLA-PPDGVAPSSHQ------STMGLFVKGSALVFTKSKDAPVKLVNQGATAGGG--NRIFKPDFDFSKLGIGGLDKEFNDIFRRAFASRVFPPAIIEKMGIKHVRGMLLFGPPGCGKTLIARQIGKV 289          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A7S4HXN0_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HXN0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.900e-36
Identity = 81/156 (51.92%), Postives = 102/156 (65.38%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVH-GLLDAGTAIEWMKPPGG-LLNFEG---VGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            ++F  G  LAM +EG+KL+I+V  +        G   G  +R     +   G L   TA+ + K  G  LL  EG    GG G  + IF +DFDF KLGIGGL  EFN+IFRRAFASR++ S ++++MGINHVRGMLL+GPPGCGKTLIARQIGKV
Sbjct:  158 QIFEVGGTLAMDFEGTKLEITVKELGQVDAAHIGTRGGGHERVRPDLATQMGQLLGPTALSFSKAQGSTLLRLEGQKVAGGGGGASNIFLSDFDFEKLGIGGLDGEFNEIFRRAFASRIWPSHIIKQMGINHVRGMLLYGPPGCGKTLIARQIGKV 313          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A1Z5KLG0_FISSO (Vesicle-fusing ATPase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLG0_FISSO)

HSP 1 Score: 141 bits (356), Expect = 4.230e-36
Identity = 79/159 (49.69%), Postives = 101/159 (63.52%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRR--SVHGLLDAGTAIEWMKPPG-------GLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGK 471
            +V   GQ +A+ +EG+KL+I+V +  +A IDP  +              +  G L + T I + +  G       G    EG GG G  N IF  DFDF KLGIGGL  EFNQIFRRAFASR++ + ++++MGINHVRGMLL+GPPGCGKTLIARQIGK
Sbjct:  143 QVLATGQSMAIDFEGTKLEITVHK--LAAIDPQQRRKSKENTGEIPTLDTNMGQLVSSTQIRFKRAEGTTAFVLTGEFIVEGAGGGGGANSIFVNDFDFEKLGIGGLDAEFNQIFRRAFASRIWPAHIIKQMGINHVRGMLLYGPPGCGKTLIARQIGK 299          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A1V9Z555_9STRA (Vesicle-fusing ATPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z555_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.090e-35
Identity = 78/154 (50.65%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMK---PPGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            + FTPGQ + +   G  +++ V +V++ T       P  P  +N      GL  AG+++ + K    P  LLN    GG    N IF+ DFDF+KLGIGGL KEFN IFRRAFASR+F   V+ ++GI HVRGMLL GPPGCGKTLIARQIGKV
Sbjct:  140 QAFTPGQFIVIDMAGKPVKMCVTKVDLLT------PPDAPPATNTLAPTVGLYVAGSSLSFTKGRDAPFKLLNQSASGGG---NRIFKPDFDFSKLGIGGLDKEFNDIFRRAFASRVFPPSVIEKLGIKHVRGMLLFGPPGCGKTLIARQIGKV 284          
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Match: A0A024TZW1_9STRA (Vesicle-fusing ATPase n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZW1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.520e-35
Identity = 79/154 (51.30%), Postives = 100/154 (64.94%), Query Frame = 1
Query:   22 KVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRSNFRRSVHGLLDAGTAIEWMKP---PGGLLNFEGVGGSGAQNVIFRADFDFAKLGIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTLIARQIGKV 474
            +VF  GQLL +  +G+ ++++V +VE+    P+G  P  P   N      GL   G+++ + K    P  L+N     G G  N IF+ DFDF+KLGIGGL KEFN IFRRAFASR+F   ++  MGI HVRGMLL GPPGCGKTLIARQIGKV
Sbjct:  145 QVFAAGQLLVVDVDGAPVKLAVTKVELLA-PPEGVVP--PSNPNPLVPTVGLFVKGSSLVFTKSKDAPVKLVNQGATAGGG--NRIFKPDFDFSKLGIGGLDKEFNDIFRRAFASRVFPPAIIERMGIKHVRGMLLFGPPGCGKTLIARQIGKV 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54763.12870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1H6_9PHAE1.000e-6166.67Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=287... [more]
B8BY63_THAPS8.270e-4152.47Vesicle-fusing ATPase n=1 Tax=Thalassiosira pseudo... [more]
A0A397CNA4_9STRA2.670e-3952.94Vesicle-fusing ATPase n=1 Tax=Aphanomyces astaci T... [more]
A0A3L6VT92_9STRA1.360e-3853.90Vesicle-fusing ATPase n=3 Tax=Aphanomyces astaci T... [more]
A0A835YZT3_9STRA1.750e-3854.67Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
A0A397A2Y9_9STRA2.560e-3753.25Vesicle-fusing ATPase n=2 Tax=Aphanomyces astaci T... [more]
A0A7S4HXN0_9STRA1.900e-3651.92Vesicle-fusing ATPase (Fragment) n=1 Tax=Odontella... [more]
A0A1Z5KLG0_FISSO4.230e-3649.69Vesicle-fusing ATPase n=2 Tax=Fistulifera solaris ... [more]
A0A1V9Z555_9STRA1.090e-3550.65Vesicle-fusing ATPase n=1 Tax=Thraustotheca clavat... [more]
A0A024TZW1_9STRA1.520e-3551.30Vesicle-fusing ATPase n=3 Tax=Aphanomyces TaxID=10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54763contigH-elongata_contig54763:595..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue2.5e-51
Seed eggNOG ortholog2880.D8LTY3
Preferred nameNSF
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0008104,GO:0008150,GO:0009306,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030054,GO:0032940,GO:0033036,GO:0040011,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055044,GO:0071702,GO:0071705,GO:0071944,GO:0098657
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsCOG0464@1,KOG0741@2759
Ec32 ortholog descriptionCDC48 domain 2-like
Ec32 orthologEc-12_003900.1
EC3.6.4.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.6420789-CDS-H-elongata_contig54763:594..10681622930892.6420789-CDS-H-elongata_contig54763:594..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54763 595..1068 -
1691679614.3254247-CDS-H-elongata_contig54763:594..10681691679614.3254247-CDS-H-elongata_contig54763:594..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54763 595..1068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54763.12870.1prot_H-elongata_contig54763.12870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54763 595..1068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54763.12870.1

>prot_H-elongata_contig54763.12870.1 ID=prot_H-elongata_contig54763.12870.1|Name=mRNA_H-elongata_contig54763.12870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
FSISSHAKVFTPGQLLAMSYEGSKLQISVDRVEIATIDPDGQAPGMPQRS
NFRRSVHGLLDAGTAIEWMKPPGGLLNFEGVGGSGAQNVIFRADFDFAKL
GIGGLGKEFNQIFRRAFASRLFDSVVVREMGINHVRGMLLHGPPGCGKTL
IARQIGKV
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mRNA from alignment at H-elongata_contig54763:595..1068-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54763.12870.1 ID=mRNA_H-elongata_contig54763.12870.1|Name=mRNA_H-elongata_contig54763.12870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig54763:595..1068- (Himanthalia elongata Himel1 dioecious)
TTTTCTATCTCTTCGCATGCAAAGGTATTCACTCCTGGACAGCTCCTGGC GATGTCCTACGAGGGCTCGAAGCTCCAAATTTCCGTAGACCGCGTGGAAA TTGCCACCATCGACCCCGACGGCCAGGCGCCAGGTATGCCACAGCGCTCC AACTTCCGTCGTAGCGTGCACGGGCTCCTGGATGCTGGGACCGCCATCGA GTGGATGAAGCCGCCCGGGGGCCTGCTGAATTTCGAGGGGGTCGGAGGGT CCGGGGCGCAGAACGTGATCTTCCGCGCAGATTTCGACTTCGCCAAATTG GGCATCGGCGGGCTCGGGAAGGAGTTCAACCAGATATTCCGGCGGGCTTT CGCGAGTCGGTTGTTCGACTCAGTGGTGGTGAGAGAGATGGGGATCAACC ACGTCAGGGGGATGCTCCTTCACGGGCCCCCCGGCTGCGGGAAGACGCTT ATCGCACGACAGATCGGAAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig54763:595..1068-

>mRNA_H-elongata_contig54763.12870.1 ID=mRNA_H-elongata_contig54763.12870.1|Name=mRNA_H-elongata_contig54763.12870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig54763:595..1068- (Himanthalia elongata Himel1 dioecious)
TTTTCTATCTCTTCGCATGCAAAGGTATTCACTCCTGGACAGCTCCTGGC
GATGTCCTACGAGGGCTCGAAGCTCCAAATTTCCGTAGACCGCGTGGAAA
TTGCCACCATCGACCCCGACGGCCAGGCGCCAGGTATGCCACAGCGCTCC
AACTTCCGTCGTAGCGTGCACGGGCTCCTGGATGCTGGGACCGCCATCGA
GTGGATGAAGCCGCCCGGGGGCCTGCTGAATTTCGAGGGGGTCGGAGGGT
CCGGGGCGCAGAACGTGATCTTCCGCGCAGATTTCGACTTCGCCAAATTG
GGCATCGGCGGGCTCGGGAAGGAGTTCAACCAGATATTCCGGCGGGCTTT
CGCGAGTCGGTTGTTCGACTCAGTGGTGGTGAGAGAGATGGGGATCAACC
ACGTCAGGGGGATGCTCCTTCACGGGCCCCCCGGCTGCGGGAAGACGCTT
ATCGCACGACAGATCGGAAAGGTATTTTCTATCTCTTCGCATGCAAAGGT
ATTCACTCCTGGACAGCTCCTGGCGATGTCCTACGAGGGCTCGAAGCTCC
AAATTTCCGTAGACCGCGTGGAAATTGCCACCATCGACCCCGACGGCCAG
GCGCCAGGTATGCCACAGCGCTCCAACTTCCGTCGTAGCGTGCACGGGCT
CCTGGATGCTGGGACCGCCATCGAGTGGATGAAGCCGCCCGGGGGCCTGC
TGAATTTCGAGGGGGTCGGAGGGTCCGGGGCGCAGAACGTGATCTTCCGC
GCAGATTTCGACTTCGCCAAATTGGGCATCGGCGGGCTCGGGAAGGAGTT
CAACCAGATATTCCGGCGGGCTTTCGCGAGTCGGTTGTTCGACTCAGTGG
TGGTGAGAGAGATGGGGATCAACCACGTCAGGGGGATGCTCCTTCACGGG
CCCCCCGGCTGCGGGAAGACGCTTATCGCACGACAGATCGGAAAGGTA
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