prot_H-elongata_contig54755.12868.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54755.12868.1
Unique Nameprot_H-elongata_contig54755.12868.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length173
Homology
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BLAST of mRNA_H-elongata_contig54755.12868.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 8.470e-61
Identity = 114/181 (62.98%), Postives = 134/181 (74.03%), Query Frame = 0 
Query:    1 MRWDAG--RGGASEGE-DPKADREAMDKAIAAGGDQ-VEVSTTKLPVSVKEFYERFFADGAPFGLADFHMSRGDWEVQAGEWQETSEEE----AAAASPEDQDGGAEREGGKQSGGLTRAVRFKTPLHITFMSSPGQVRTLKQQRARFFGSAGCVVETITSVEDRIPLSDNFHVEDRWARR 173
            MRWD+G   GGA +G  DP+ADR+AM++AI+AGGD   EV+T +  VSVKEFYERF AD AP+ L DFHMSRGDWEV AGEWQ T++E      AA S +              GG+TRA+RFKTPLHITFMSSPG VRTLK+QR+R FG  GC+VET T+VEDRIPL+DNFHVEDRW  R
Sbjct:  560 MRWDSGGRAGGAGDGGVDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWEVDAGEWQHTTKEGEGGGGAAGSTKGDXXXLRGPRPPGGGGVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRVFGGQGCIVETQTTVEDRIPLNDNFHVEDRWIIR 740
[Close]
BLAST of mRNA_H-elongata_contig54755.12868.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.810e-59
Identity = 115/191 (60.21%), Postives = 134/191 (70.16%), Query Frame = 0 
Query:    1 MRWDAG--RGGASEGE-DPKADREAMDKAIAAGGDQ-VEVSTTKLPVSVKEFYERFFADGAPFGLADFHMSRGDWEVQAGEWQETSEEEAAAASPEDQDGGAEREGGKQSGG--------------LTRAVRFKTPLHITFMSSPGQVRTLKQQRARFFGSAGCVVETITSVEDRIPLSDNFHVEDRWARR 173
            MRWD+G   GGA EG  DP+ADR+AM++AI+AGGD   EV+T +  VSVKEFYERF AD AP+ L DFHMSRGDWEV A EWQ+T+EE          +GG    G  +                 +TRA+RFKTPLHITFMSSPG VRTLK+QR+RFFG  GC+VET T+VEDRIPLSDNFHVEDRW  R
Sbjct:  554 MRWDSGGRAGGAGEGGGDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWEVDASEWQQTTEEG---------EGGGGATGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIR 735
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54755.12868.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMW1_ECTSI8.470e-6162.98VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHE3_9PHAE1.810e-5960.21VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031968VASt domainPFAMPF16016VAStcoord: 37..170
e-value: 7.3E-19
score: 68.7
IPR031968VASt domainPROSITEPS51778VASTcoord: 31..173
score: 17.669
NoneNo IPR availablePANTHERPTHR47666FAMILY NOT NAMEDcoord: 33..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54755contigH-elongata_contig54755:787..3144 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54755.12868.1mRNA_H-elongata_contig54755.12868.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54755 760..3144 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54755.12868.1 ID=prot_H-elongata_contig54755.12868.1|Name=mRNA_H-elongata_contig54755.12868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MRWDAGRGGASEGEDPKADREAMDKAIAAGGDQVEVSTTKLPVSVKEFYE
RFFADGAPFGLADFHMSRGDWEVQAGEWQETSEEEAAAASPEDQDGGAER
EGGKQSGGLTRAVRFKTPLHITFMSSPGQVRTLKQQRARFFGSAGCVVET
ITSVEDRIPLSDNFHVEDRWARR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031968VASt