mRNA_H-elongata_contig54755.12868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54755.12868.1
Unique NamemRNA_H-elongata_contig54755.12868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54755.12868.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.070e-65
Identity = 119/190 (62.63%), Postives = 142/190 (74.74%), Query Frame = 1 
Query:    1 RRGSRLWKIMRWDAG--RGGASEGE-DPKADREAMDKAIAAGGDQ-VEVSTTKLPVSVKEFYERFFADGAPFGLADFHMSRGDWEVQAGEWQETSEEE----AAAASPEDQDGGAEREGGKQSGGLTRAVRFKTPLHITFMSSPGQVRTLKQQRARFFGSAGCVVETITSVEDRIPLSDNFHVEDRWARR 546
            R+GS+LW +MRWD+G   GGA +G  DP+ADR+AM++AI+AGGD   EV+T +  VSVKEFYERF AD AP+ L DFHMSRGDWEV AGEWQ T++E      AA S +              GG+TRA+RFKTPLHITFMSSPG VRTLK+QR+R FG  GC+VET T+VEDRIPL+DNFHVEDRW  R
Sbjct:  551 RQGSKLWNMMRWDSGGRAGGAGDGGVDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWEVDAGEWQHTTKEGEGGGGAAGSTKGDXXXLRGPRPPGGGGVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRVFGGQGCIVETQTTVEDRIPLNDNFHVEDRWIIR 740
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BLAST of mRNA_H-elongata_contig54755.12868.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 7.230e-64
Identity = 120/200 (60.00%), Postives = 142/200 (71.00%), Query Frame = 1 
Query:    1 RRGSRLWKIMRWDAG--RGGASEGE-DPKADREAMDKAIAAGGDQ-VEVSTTKLPVSVKEFYERFFADGAPFGLADFHMSRGDWEVQAGEWQETSEEEAAAASPEDQDGGAEREGGKQSGG--------------LTRAVRFKTPLHITFMSSPGQVRTLKQQRARFFGSAGCVVETITSVEDRIPLSDNFHVEDRWARR 546
            R+GS+LW +MRWD+G   GGA EG  DP+ADR+AM++AI+AGGD   EV+T +  VSVKEFYERF AD AP+ L DFHMSRGDWEV A EWQ+T+EE          +GG    G  +                 +TRA+RFKTPLHITFMSSPG VRTLK+QR+RFFG  GC+VET T+VEDRIPLSDNFHVEDRW  R
Sbjct:  545 RQGSKLWNMMRWDSGGRAGGAGEGGGDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWEVDASEWQQTTEEG---------EGGGGATGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIR 735
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54755.12868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMW1_ECTSI3.070e-6562.63VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHE3_9PHAE7.230e-6460.00VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54755contigH-elongata_contig54755:760..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue2.9e-53
Seed eggNOG ortholog2880.D8LMW1
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size546
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54755.12868.1prot_H-elongata_contig54755.12868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54755 787..3144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.407382-UTR-H-elongata_contig54755:759..7861622930892.407382-UTR-H-elongata_contig54755:759..786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54755 760..786 +
1691679614.2357316-UTR-H-elongata_contig54755:759..7861691679614.2357316-UTR-H-elongata_contig54755:759..786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54755 760..786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.425409-CDS-H-elongata_contig54755:786..8851622930892.425409-CDS-H-elongata_contig54755:786..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 787..885 +
1691679614.245217-CDS-H-elongata_contig54755:786..8851691679614.245217-CDS-H-elongata_contig54755:786..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 787..885 +
1622930892.4485428-CDS-H-elongata_contig54755:1306..14231622930892.4485428-CDS-H-elongata_contig54755:1306..1423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 1307..1423 +
1691679614.2535465-CDS-H-elongata_contig54755:1306..14231691679614.2535465-CDS-H-elongata_contig54755:1306..1423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 1307..1423 +
1622930892.4706743-CDS-H-elongata_contig54755:2558..27021622930892.4706743-CDS-H-elongata_contig54755:2558..2702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 2559..2702 +
1691679614.2663167-CDS-H-elongata_contig54755:2558..27021691679614.2663167-CDS-H-elongata_contig54755:2558..2702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 2559..2702 +
1622930892.4862456-CDS-H-elongata_contig54755:2985..31441622930892.4862456-CDS-H-elongata_contig54755:2985..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 2986..3144 +
1691679614.2757077-CDS-H-elongata_contig54755:2985..31441691679614.2757077-CDS-H-elongata_contig54755:2985..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54755 2986..3144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54755.12868.1

>prot_H-elongata_contig54755.12868.1 ID=prot_H-elongata_contig54755.12868.1|Name=mRNA_H-elongata_contig54755.12868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MRWDAGRGGASEGEDPKADREAMDKAIAAGGDQVEVSTTKLPVSVKEFYE
RFFADGAPFGLADFHMSRGDWEVQAGEWQETSEEEAAAASPEDQDGGAER
EGGKQSGGLTRAVRFKTPLHITFMSSPGQVRTLKQQRARFFGSAGCVVET
ITSVEDRIPLSDNFHVEDRWARR
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mRNA from alignment at H-elongata_contig54755:760..3144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54755.12868.1 ID=mRNA_H-elongata_contig54755.12868.1|Name=mRNA_H-elongata_contig54755.12868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2385bp|location=Sequence derived from alignment at H-elongata_contig54755:760..3144+ (Himanthalia elongata Himel1 dioecious)
AGGAGGGGATCCCGGCTGTGGAAGATAATGAGATGGGATGCAGGAAGAGG
GGGCGCGAGTGAGGGAGAGGATCCGAAGGCGGATCGGGAGGCGATGGACA
AAGCGATCGCGGCCGGAGGAGATCAGGTGTGATAATATATCTTGTGTACC
GTATGTGTTATTGTTGTTGGTCTCACTTTTAGCAGAAGGATCAACCGGAT
TTGGTTCCCTGAAGAGAGAAAATAAAATGGGGGAGGGAGGGGGCGAGGCG
GTGCCCGCAAAGAGCGTTGTTTTTCCATGCGTCTCTCACAAACGTGGAGA
GTAGTTCTCTTGTTTTTTGTCTACAGTCCGCTCCGCGCAACCTACGTGAT
CTAATGGAGTACACTATTTCCAGCCATCGACTCGTGAGATAGTTCACCTC
GCTCACATGCATCAAATCATAAAAAATGACGAGAAACGCGGTAAACGAAC
TTCCCTCTGTCACTAGTTGCGTCTAAAGCATTTGTCTGCATGCCTATGTT
TCCCTCGATGTGACCGTTGAATGATTTGGCTATGGGTCAAACGCCAGGTG
GAGGTGTCAACCACGAAACTTCCGGTTTCAGTCAAGGAGTTCTACGAGAG
ATTTTTCGCCGATGGTGCGCCGTTCGGGCTCGCCGACTTCCACATGAGCA
GAGGGGACTGGGAAGTGAGTGTCACCCCCCGCGGCAAAGGACCCATCCAT
CCGGCCCCAAGGTCACTTGTTTGTCTGTCGGCCGCCATTAGGAAGATGGG
GGAAGAAGAAGGCTACTCGTTTCGTTTTTGTTCTTGGGGGTGAATCTCGA
AACGTCAAGCACAGTAGGAAGAGTTAAATATCCACAATTTGTGCTGGTAT
TTTTTCGGAGGCGGCGCTAGTGAAGACAAGGCAGCACTCAAATAGCCGGG
AGAGCATGCAGAGCAGAGGAGATTGCATCAACAGAGAGGGGAGATGAGGG
GGGGGGGGGGGGCCGGGCCAAACAAAACTTGGGTAATTTTGGGCGAGGGG
GGTTTCTTTGGGGAGTGGGGTTTTCACGTTTTCGTCGGTNNNNNNNNNNG
AAAAGAAAGAAAACGAAGAAAAAAGAGGGGGGGGAGGGAAAAGAAAAAGA
GGAGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTC
GGGACAAACAAGACTTGGTTAATTTTCGTCGCGGCGCGCTTCATCTGGGA
TGTGTGGTCTCCAGTCTTCGTCGGTAGGGCGGGGGTGAGCACGTATATTG
AGCGCATGTCGAATCCTAACGGGTATAGACCACGTATCTCAATAATGCCG
GGACGGAACCTTAAGGATGATCCCGCGTTTTAGCCATTATTCTTCCCTTT
GGTAGCGCCAAACTGTGTGTGCCGTGTCGTGGGTTTTAATCTGGCATAAC
GGGTAACCAAGTGCTGCACATTCCGCGGGCACTACTATATACTATGACTA
TATTATTTACTATATCACTATATACTATGACTATATTATTAATAACGACG
CACGGACACGACCTACACAGTGGTATATTCGTGATACACTCAGACTTTAA
TCTGCTCATGAACTCCTTGCGGAGTACTCTCAAAAGTATTACTTTGCTCT
AGGGCTTTCCAACAATCCGTTCTTCAGCAGGCATCCTGTAGAATGGGATC
CTTTTGACCCCTTTGGGTAGAGACAAGACTGTTTGACCTAGGTCCCTGAG
GAGGCGGTATTCGGGAGGGGGATTGAAAGTAAGTAAGCGTCACACGATTT
GTCACCCAGCTGCTATAAATATTTTGAAATAAACATTTTATGTGCACAGG
TGCAAGCTGGTGAGTGGCAGGAGACGTCAGAAGAGGAGGCCGCCGCGGCA
AGCCCTGAAGACCAAGACGGTGGCGCGGAAAGAGAAGGGGGTAAACAGAG
CGGTGGGCTCACTCGCGCCGTACGCTTTAAGACGCCACTGCACGTGAGAG
TGTGGAGGCGGAGGGGACGCGTGGGGCGGGGGGAGAGTACCATGATGATT
CAGTTGTGCTGTCGGTTGTTTTGATTGTGGAAAGTCACCGCGAACACGTA
TATCCTATTTCGGCGCAGCCATGGCTGTCGTTGCTCGTGCTCCCCGCTGC
TCCTTCAGACAGCTATCATATTTTGGCGTAGATGAGGGGACGGGCAGACC
CCCCTGGCCTACCATTACGGTTACATACATACGTGACCCCTCACCTCTCC
TCCCTCCTCTCCTATGGAAACCCCAGATAACGTTCATGAGCAGCCCGGGT
CAGGTTCGGACATTGAAGCAGCAGCGCGCGAGATTCTTTGGCAGCGCGGG
CTGCGTCGTGGAAACCATTACCAGCGTCGAGGATCGCATCCCACTCAGCG
ACAACTTCCACGTCGAAGACCGGTGGGCGAGGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig54755:760..3144+

>mRNA_H-elongata_contig54755.12868.1 ID=mRNA_H-elongata_contig54755.12868.1|Name=mRNA_H-elongata_contig54755.12868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig54755:760..3144+ (Himanthalia elongata Himel1 dioecious)
ATGAGATGGGATGCAGGAAGAGGGGGCGCGAGTGAGGGAGAGGATCCGAA
GGCGGATCGGGAGGCGATGGACAAAGCGATCGCGGCCGGAGGAGATCAGA
TGAGATGGGATGCAGGAAGAGGGGGCGCGAGTGAGGGAGAGGATCCGAAG
GCGGATCGGGAGGCGATGGACAAAGCGATCGCGGCCGGAGGAGATCAGGT
GGAGGTGTCAACCACGAAACTTCCGGTTTCAGTCAAGGAGTTCTACGAGA
GATTTTTCGCCGATGGTGCGCCGTTCGGGCTCGCCGACTTCCACATGAGC
AGAGGGGACTGGGAAGTGGAGGTGTCAACCACGAAACTTCCGGTTTCAGT
CAAGGAGTTCTACGAGAGATTTTTCGCCGATGGTGCGCCGTTCGGGCTCG
CCGACTTCCACATGAGCAGAGGGGACTGGGAAGTGCAAGCTGGTGAGTGG
CAGGAGACGTCAGAAGAGGAGGCCGCCGCGGCAAGCCCTGAAGACCAAGA
CGGTGGCGCGGAAAGAGAAGGGGGTAAACAGAGCGGTGGGCTCACTCGCG
CCGTACGCTTTAAGACGCCACTGCACGTGCAAGCTGGTGAGTGGCAGGAG
ACGTCAGAAGAGGAGGCCGCCGCGGCAAGCCCTGAAGACCAAGACGGTGG
CGCGGAAAGAGAAGGGGGTAAACAGAGCGGTGGGCTCACTCGCGCCGTAC
GCTTTAAGACGCCACTGCACATAACGTTCATGAGCAGCCCGGGTCAGGTT
CGGACATTGAAGCAGCAGCGCGCGAGATTCTTTGGCAGCGCGGGCTGCGT
CGTGGAAACCATTACCAGCGTCGAGGATCGCATCCCACTCAGCGACAACT
TCCACGTCGAAGACCGGTGGGCGAGGAGAATAACGTTCATGAGCAGCCCG
GGTCAGGTTCGGACATTGAAGCAGCAGCGCGCGAGATTCTTTGGCAGCGC
GGGCTGCGTCGTGGAAACCATTACCAGCGTCGAGGATCGCATCCCACTCA
GCGACAACTTCCACGTCGAAGACCGGTGGGCGAGGAGA
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